Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0658900 | OGI:11074910 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:26434011-26438037 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGGTGGCATCGGCGGCGGCGGCGGCCACGGCGGTGCTAGTGTACGTCGCGCTCTCCTCCTCCGGCGGCGGCGGGGAGGCGGCGAGGCTGCGGAGGCCGGAGGAGGAAGATGAAGAGGAATCCAAGAAGCGGTGGCCGGAGAGGGCGCCGGCGAGCTGGAGGGAGGCGGCGGCGGTGGCGGCGAGGACGGTGGGGTTCACGTACCGGGAGACGCTGGGGAGGTGGCCGCTCGGGGACATCGCGTTCGGGATCAGGCACTACATGCGAATCCAGGTGCGCATTTTGATTTTTTCTGCAAATGCAGTTGCAGACTCTGCAGTTGCATTTGCTCTTACCTGCTTGATTATCATTAAGTCTGGTTCGATTTGAGATTATGTTTATGTTTCAATCATGCATGAAGTCCTTGTTTTTCATGGTGATGAACTGATGATTGATGTGGGGGCTGCCTGTTAGTCTTGAGGAATCCATTGTGGTTGAAAGTAATAAAGATGAAAAGGTGGCTGATTGGGGTTTTGGGAAGTTGTGTGTTCCTGATTTCTGGGATCAATTCATGCATGATGGATTAATGCAAATTGCTTAACTGGTCATAAAGCTGATGTATGTTTGATTAAGGAGTAACTGTTCCTGAATGGCCATCTCCCTTATGTCCAAATTGATGGCTATTTACTCGATGGCAACCCAGAACTAGATAAATTGCTGTTGCATAAATAGCTCTGTTGAACTTCAGGTGAAGTAACTGCAGTTAGTTCAGGTTGTGATGATGCCTCTTATGGACATATCAATTCTGTTGAACATCTCAATCTCTGTCCCTATGTTCTCATGCAGAACTAGATAATGCTGCTGCATCAGCAACTCTGTTATGTTTAAGCTGCAGTAACTGTAGTAGAATTATGAAATATCCCATTTTGTTGTCTGAATGTCCATTTAAACTTTTAGTGGATTATTTATGAAAGGTGTTTAGCTCACATGTCATATACTTATATATATCCTGAAATTTGAAAAACTGCAATCGGTTCATTACTTTTTTGATTGACATATTTCTCTTGTGAACAATTCTTTTCAGGGCAATCTGCAGCACGAGTACACTGGTCGCAGTTGTGTGCCCCTAGAAGGCCCTGTAACAAGGCAGGAGCTGATTGCAATTCTTAGATATCTGAGACTCTGCATGTTTTTCGCGAAGAAGCCATACGAAGTGTTCCTGGAATTTGGTGGATATGGCCAGAGTGATATCCTCATAAGGAAATCAAAGGCAAGGGTATGTATCAATCTGATTCAAATTGTTGTTTTTCTTTTCTAGCTCAGGTTATGAATGGAGACATGCATTTTAGTGGAAACTCAGTGTTGTCATGCAGGTTATGAAGCCCTCATTCACAATTGTCCGCGATAAAAGTACTAAATCCTTCATCCTTTTCATTCGGGGCGCTACAAGTGTTAAGGATCGCCTGACGGCAGCGACTGCTGCAGAGGTTCCATTTCATCATGTGGTGTTAAAAGAAGGCCGTGTTTCTAATGTAGTTGTTGGCCATGTACATTGCGGAATGGTTGCAGCAGCTAGGTGGATTGCAGATCAGGCCATTCCCTGTCTCAGCAGAGCAGTTGAGCAATTTCCAGACTACAGAATTAAGGTGATTAATCAACCTTTTCTGAACCTCCATGGATGTGTTTTCCGTTTCCTGCAACAGGATGAATGATTTAGTTTGCGCAACTTAATATTGAATTGGCAAAGATGCAACACTGACAAGTACTGCAGATTACATGAACTATCCTTTTCTTGATCTTTGTAACAGTTACAGTTCACTGAATCATCCAAAGTTTCCTCTCTAACTCAAATTTTATCATTTCAGATCATTGGGCATTCAATGGGTGCCGGTATTGCAGCAATCTTAACATATATGCTACGTGAGAACAAGAAATTGTCATCATCCTCATGTATTGCCTTTGGACCAGGTACTAGTAGTAGTCTAGTGCTACATTTTTTTTTTTGGGGAATAGGAGTCTAGTACTACATTTGACTGTCTAACATACTGATACCAAGAAAAAAAATCATTGACGTCAATTTCCAATAATAATAGAATTGACTTTCTTGTATTGTTGGCAAAGTCCTTACACTGACATAAAGTCTCTAGTATTGCTGTATAGGAAGACAAAAATAGAAACAATTCTCTGTTAGAAGATTGTATTTGATCATATTCGTTTTCGGAAAGGCTTGCATGTAATGTTCTATTGTTCAGAGAAGAAATTGAGAATAAGTATATATGTTCAAAAACAACATTGGCAAAGTGATCCCAAGCAATAGAAATGCCAGACTGCTATATAATTGGCACGCAAAAGAATCATTAGTCTGACATTAAGGAACTAATATATATGTGAACAATTTCACTATCCCCTTGTTTGTTTCAACATTTTACTTTTTGATTGCCTTGTTTGCTACTTTATAGTACTACTAATAATAGATTAACATTTGGAACTGCTACTGTCCAGCTGCTTGCATGACCTGGGATTTGGCTGAGTCAGGCAAAGAGTTTGTGACCACTGTTGTCAACAGAAATGACCTGGTTCCATCATTTGGTAAAGTGTCAGCTGCCAACCTTCACACCGAGGTACCACACGCCTCAAAGCCACTTATCCTCGTGTAGTCATGTCTATCAGTAAGAACAATTAAATGTGTTTTTGCATTCTGTGGCTAACATGCATTTGGTTACCCATGTTAACTTTGAACAAATAGCAAATACTGGTTTTCAGATGTAATGTATTTTGTTATCGCAAGCAATATTTTTGAACAAGTAGCATAAGACATTTTCTCCCCTGATCAAATATTTTCAGGTAATAGGGTCATCTTGGGCACATGATCTCCTGGAGCAAATTCAACAGACAAGGATCTTGGGTTTTGTTAACCGTTCTGTGACCTTCATGCAATCCCAGTTCCCTTTCATATCCAATCCAAGGTCTAAAGTTGCAGATGTTGATCTGATGCTATCTGGCACATCCGAGGTACAAACAACTCATGAAAAGATCATGTACCATGCACAAAAATGTGTTGTTACTGACAGCTACAATCAGATCTTCATTTTTTTTCAGTCATCATGCACTGACTTGATTCATCTTGTGAGTTTCAGGCTGAGACGATACTTTCAGTAGATGCGCGCGCCGCAATCAAGAAACATTCTACATTATCCTTCTGGCCAAGTGCTCCTTCAAACAGGAAAACTCTCGAGTCATCTTTGATGAACCCAACACAGAGCATTGCAGCACTGATGTCCACCTATGTTGGAACTGACAAAGACACTGAAGAACACAAGAATCAGAATTCAGACACCAAAGAACTCTACAGGCAAGACAAAGAAGCAGATGCAGAGAAGAATTTGGAGCGGTTTTTAGAAGCGTTGCGATCATCGCCAAGCGCCTCGCAGGAGCCTCTCCAGTTCTACCCTCCTGGAAGAATCATGCACATGGTTGTGCTGCCATCTCCAAAAGAGCCTAGCAGCATTGATCAATGCAGTCAGGATGAGTGTGTTGCCCTCTATGAGACTCCTCGCAGCATGTATAGTAAGATTCGGCTTGCGAGATCTATGATAAGAGATCATTACATGCCTAGGTACATTGAGACAATGGAGATGCTGATCGATAAGTTTGAAGAAGAAGACAGTCATACATGACTAATTTCGCATTTGCACTTCACTGAAAAGAATGATTATAGGATAAAACTGTAATTCTACAGGACACAACACCGTATACAGAATAAGAGAAGCATAATTTAGATATTTGGAACCCCATGCTTGGTGGGTTCATGAACTTAGAGACTTGAGTTGGCGGCGCGGCAGCCAACATCATAGGAATTCAGGAAGAGGTGAAACTCTGCATCAATTGTCGCTTAGAATTTTGGGCAATGGTTGATATTGTTTTTGTCTGTAACTAGGTCTAAGCCTATGGTAATCTTGTACAATAACTAGGTATATAAAGGATGTATTAACTCTTGTAACAAAAAGGTTCTTCAGGGAACATAATATGAGGGGAAGCCATAACAAGG
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| CDS seq | GGGGTGGCATCGGCGGCGGCGGCGGCCACGGCGGTGCTAGTGTACGTCGCGCTCTCCTCCTCCGGCGGCGGCGGGGAGGCGGCGAGGCTGCGGAGGCCGGAGGAGGAAGATGAAGAGGAATCCAAGAAGCGGTGGCCGGAGAGGGCGCCGGCGAGCTGGAGGGAGGCGGCGGCGGTGGCGGCGAGGACGGTGGGGTTCACGTACCGGGAGACGCTGGGGAGGTGGCCGCTCGGGGACATCGCGTTCGGGATCAGGCACTACATGCGAATCCAGGGCAATCTGCAGCACGAGTACACTGGTCGCAGTTGTGTGCCCCTAGAAGGCCCTGTAACAAGGCAGGAGCTGATTGCAATTCTTAGATATCTGAGACTCTGCATGTTTTTCGCGAAGAAGCCATACGAAGTGTTCCTGGAATTTGGTGGATATGGCCAGAGTGATATCCTCATAAGGAAATCAAAGGCAAGGTTGTTGGCCATGTACATTGCGGAATGGTTGCAGCAGCTAGGTGGATTGCAGATCAGGCCATTCCCTGTCTCAGCAGAGCAGTTGAGCAATTTCCAGACTACAGAATTAAGATCATTGGGCATTCAATGGGTGCCGGTATTGCAGCAATCTTAA
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| Protein seq | GVASAAAAATAVLVYVALSSSGGGGEAARLRRPEEEDEEESKKRWPERAPASWREAAAVAARTVGFTYRETLGRWPLGDIAFGIRHYMRIQGNLQHEYTGRSCVPLEGPVTRQELIAILRYLRLCMFFAKKPYEVFLEFGGYGQSDILIRKSKARLLAMYIAEWLQQLGGLQIRPFPVSAEQLSNFQTTELRSLGIQWVPVLQQS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0658900 | Os11t0658900-01 | Chr11 | 26434011 | 26438037 | + | irgsp1_rep | ||
| CDS seq | GGGGTGGCATCGGCGGCGGCGGCGGCCACGGCGGTGCTAGTGTACGTCGCGCTCTCCTCCTCCGGCGGCGGCGGGGAGGCGGCGAGGCTGCGGAGGCCGGAGGAGGAAGATGAAGAGGAATCCAAGAAGCGGTGGCCGGAGAGGGCGCCGGCGAGCTGGAGGGAGGCGGCGGCGGTGGCGGCGAGGACGGTGGGGTTCACGTACCGGGAGACGCTGGGGAGGTGGCCGCTCGGGGACATCGCGTTCGGGATCAGGCACTACATGCGAATCCAGGGCAATCTGCAGCACGAGTACACTGGTCGCAGTTGTGTGCCCCTAGAAGGCCCTGTAACAAGGCAGGAGCTGATTGCAATTCTTAGATATCTGAGACTCTGCATGTTTTTCGCGAAGAAGCCATACGAAGTGTTCCTGGAATTTGGTGGATATGGCCAGAGTGATATCCTCATAAGGAAATCAAAGGCAAGGTTGTTGGCCATGTACATTGCGGAATGGTTGCAGCAGCTAGGTGGATTGCAGATCAGGCCATTCCCTGTCTCAGCAGAGCAGTTGAGCAATTTCCAGACTACAGAATTAAGATCATTGGGCATTCAATGGGTGCCGGTATTGCAGCAATCTTAA
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| Protein seq | GVASAAAAATAVLVYVALSSSGGGGEAARLRRPEEEDEEESKKRWPERAPASWREAAAVAARTVGFTYRETLGRWPLGDIAFGIRHYMRIQGNLQHEYTGRSCVPLEGPVTRQELIAILRYLRLCMFFAKKPYEVFLEFGGYGQSDILIRKSKARLLAMYIAEWLQQLGGLQIRPFPVSAEQLSNFQTTELRSLGIQWVPVLQQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0658900 | RBH | 0.0 | 0.0 | 0.318080 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43760 | RBH | 0.0 | 0.0 | 0.041987 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022670 | RBH | 0.0 | 0.0 | 0.773800 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022710 | RBH | 0.0 | 0.0 | 0.306772 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022440 | RBH | 0.0 | 0.000000 | 1.036025 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022330 | RBH | 0.0 | 0.0 | 1.650093 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0392700 | RBH | 0 | 0.004831 | 0.551573 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023290 | RBH | 0.0 | 0.0 | 0.178939 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0415600 | RBH | 0.0605295 | 0 | 0.5273805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022110 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022500 | RBH | 0.0 | 0.0 | 0.173179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022930 | RBH | 0.0 | 0.0 | 0.766144 |
