Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0644100 | OGI:11072810 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:25552080-25553309 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCTCCTCCTCCTTCTCGATCTTCTCGATGCGCATGGTGGCCGCGCGGCGCCCGCGGGCGCTAATGCTGCTCGCCGCCGTCCTCCTCGTGGCGGTGCCCGTGGCGGCGGCGACGCTGCACCCGGTGGACTACCTGGCGCTGCAGGCGGTGCGGCGCGCGCTGTCGGACATGCCGGGGTCGAGGTTCTTCGCGTCGTGGGACTTCACCGGCGACCCCTGCGGGTTCGCGGGCGTGTCGTGCTCGGGCGACGGCCGCGTCGTCACCCTGGCGCTCGGCGACCCGCGCGCGGGGGCGCCGGGGCTGTCCGGCGCGCTCCCCGCCGCCGCGCTGGCGCGGCTCTCCGAGCTCGCGTCGCTGTCGCTCGTCCCCGGGCGCGTGTCCGGGGAGCTCCCCCCCGCCGTCGCCGCGCTCCCGTCGCTCCGGTTCCTGGCGCTCGCCGGGAACCTCCTCTCCGGCGACCTCCCCGCCACGTTCTCCCCCATGCTCCGCACCGTCGACCTCAGCAAGAACTCATTCTCCGGCAGGATACCGCCGTCGCTGCCCCTCATCCGGAGCCTCCGGACGCTCGTCCTCTCCCACAACTCCCTCTCCGGCGAGATTCCCAAGCTGGTGAGCTCCCCGTTGGTCCATCTCGACCTCAGGAACAACCGCCTCACCGGCGGCGTCCCGCCGCTGCCGGCGACGCTCGTGTACCTGTCCCTCGCCGGGAACAGGTTCTCCGGCCGCGTCGGCGGCGTGCTCCGGAGGCTCCCGAGGCTCTCGTTCCTTGACCTCGGCGGCAACTGGTTCTCCGGCGAGGTCCCCGGCGAGGTGTTCTCCTTCCGGATCAGCTACCTGCAGCTCCGCAAGAACGCGTTCTCGGGCGAGCTCCGGCCATCGGGGCGGGTGCCAGCCGGCGCCACGGTGGACCTCAGCCACAACGCGCTGTCCGGGCGCGTCCCCGCCGAGCTGGCGCCGGCGGCGGCGGTGTACCTGAACGGGAACAAGTTCGCCGGCCAGGTGCCGCGGGAGATCGCCGCGGCGGCGGAGGGCGGCCGGATGCGGGTGCTCTTCTTGCAGGACAACTTCCTGACCGGCATCGGCGTGGGCGGCGTCCCGGCGAGCGCCGCCGTGTGCGCGCACATGAACTGCGTGGCGCCGCCGCCGCCGGTGGTGGCGGCGTGCCCGGCGAAGGGCGGCAGGGGTCGCCGCCGGCCGCCGTCGCAGTGCGGCGGCCGGAGGCGGTGAGGTG
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| CDS seq | ATGCGCATGGTGGCCGCGCGGCGCCCGCGGGCGCTAATGCTGCTCGCCGCCGTCCTCCTCGTGGCGGTGCCCGTGGCGGCGGCGACGCTGCACCCGGTGGACTACCTGGCGCTGCAGGCGGTGCGGCGCGCGCTGTCGGACATGCCGGGGTCGAGGTTCTTCGCGTCGTGGGACTTCACCGGCGACCCCTGCGGGTTCGCGGGCGTGTCGTGCTCGGGCGACGGCCGCGTCGTCACCCTGGCGCTCGGCGACCCGCGCGCGGGGGCGCCGGGGCTGTCCGGCGCGCTCCCCGCCGCCGCGCTGGCGCGGCTCTCCGAGCTCGCGTCGCTGTCGCTCGTCCCCGGGCGCGTGTCCGGGGAGCTCCCCCCCGCCGTCGCCGCGCTCCCGTCGCTCCGGTTCCTGGCGCTCGCCGGGAACCTCCTCTCCGGCGACCTCCCCGCCACGTTCTCCCCCATGCTCCGCACCGTCGACCTCAGCAAGAACTCATTCTCCGGCAGGATACCGCCGTCGCTGCCCCTCATCCGGAGCCTCCGGACGCTCGTCCTCTCCCACAACTCCCTCTCCGGCGAGATTCCCAAGCTGGTGAGCTCCCCGTTGGTCCATCTCGACCTCAGGAACAACCGCCTCACCGGCGGCGTCCCGCCGCTGCCGGCGACGCTCGTGTACCTGTCCCTCGCCGGGAACAGGTTCTCCGGCCGCGTCGGCGGCGTGCTCCGGAGGCTCCCGAGGCTCTCGTTCCTTGACCTCGGCGGCAACTGGTTCTCCGGCGAGGTCCCCGGCGAGGTGTTCTCCTTCCGGATCAGCTACCTGCAGCTCCGCAAGAACGCGTTCTCGGGCGAGCTCCGGCCATCGGGGCGGGTGCCAGCCGGCGCCACGGTGGACCTCAGCCACAACGCGCTGTCCGGGCGCGTCCCCGCCGAGCTGGCGCCGGCGGCGGCGGTGTACCTGAACGGGAACAAGTTCGCCGGCCAGGTGCCGCGGGAGATCGCCGCGGCGGCGGAGGGCGGCCGGATGCGGGTGCTCTTCTTGCAGGACAACTTCCTGACCGGCATCGGCGTGGGCGGCGTCCCGGCGAGCGCCGCCGTGTGCGCGCACATGAACTGCGTGGCGCCGCCGCCGCCGGTGGTGGCGGCGTGCCCGGCGAAGGGCGGCAGGGGTCGCCGCCGGCCGCCGTCGCAGTGCGGCGGCCGGAGGCGGTGA
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| Protein seq | MRMVAARRPRALMLLAAVLLVAVPVAAATLHPVDYLALQAVRRALSDMPGSRFFASWDFTGDPCGFAGVSCSGDGRVVTLALGDPRAGAPGLSGALPAAALARLSELASLSLVPGRVSGELPPAVAALPSLRFLALAGNLLSGDLPATFSPMLRTVDLSKNSFSGRIPPSLPLIRSLRTLVLSHNSLSGEIPKLVSSPLVHLDLRNNRLTGGVPPLPATLVYLSLAGNRFSGRVGGVLRRLPRLSFLDLGGNWFSGEVPGEVFSFRISYLQLRKNAFSGELRPSGRVPAGATVDLSHNALSGRVPAELAPAAAVYLNGNKFAGQVPREIAAAAEGGRMRVLFLQDNFLTGIGVGGVPASAAVCAHMNCVAPPPPVVAACPAKGGRGRRRPPSQCGGRRR |
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| Function | LRR receptor-like serine/threonine-protein kinase SIK1 [UniProtKB/Swiss-Prot:Q658G7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0644100 | Os11t0644100-00 | Chr11 | 25552080 | 25553309 | + | irgsp1_rep | ||
| CDS seq | ATGCGCATGGTGGCCGCGCGGCGCCCGCGGGCGCTAATGCTGCTCGCCGCCGTCCTCCTCGTGGCGGTGCCCGTGGCGGCGGCGACGCTGCACCCGGTGGACTACCTGGCGCTGCAGGCGGTGCGGCGCGCGCTGTCGGACATGCCGGGGTCGAGGTTCTTCGCGTCGTGGGACTTCACCGGCGACCCCTGCGGGTTCGCGGGCGTGTCGTGCTCGGGCGACGGCCGCGTCGTCACCCTGGCGCTCGGCGACCCGCGCGCGGGGGCGCCGGGGCTGTCCGGCGCGCTCCCCGCCGCCGCGCTGGCGCGGCTCTCCGAGCTCGCGTCGCTGTCGCTCGTCCCCGGGCGCGTGTCCGGGGAGCTCCCCCCCGCCGTCGCCGCGCTCCCGTCGCTCCGGTTCCTGGCGCTCGCCGGGAACCTCCTCTCCGGCGACCTCCCCGCCACGTTCTCCCCCATGCTCCGCACCGTCGACCTCAGCAAGAACTCATTCTCCGGCAGGATACCGCCGTCGCTGCCCCTCATCCGGAGCCTCCGGACGCTCGTCCTCTCCCACAACTCCCTCTCCGGCGAGATTCCCAAGCTGGTGAGCTCCCCGTTGGTCCATCTCGACCTCAGGAACAACCGCCTCACCGGCGGCGTCCCGCCGCTGCCGGCGACGCTCGTGTACCTGTCCCTCGCCGGGAACAGGTTCTCCGGCCGCGTCGGCGGCGTGCTCCGGAGGCTCCCGAGGCTCTCGTTCCTTGACCTCGGCGGCAACTGGTTCTCCGGCGAGGTCCCCGGCGAGGTGTTCTCCTTCCGGATCAGCTACCTGCAGCTCCGCAAGAACGCGTTCTCGGGCGAGCTCCGGCCATCGGGGCGGGTGCCAGCCGGCGCCACGGTGGACCTCAGCCACAACGCGCTGTCCGGGCGCGTCCCCGCCGAGCTGGCGCCGGCGGCGGCGGTGTACCTGAACGGGAACAAGTTCGCCGGCCAGGTGCCGCGGGAGATCGCCGCGGCGGCGGAGGGCGGCCGGATGCGGGTGCTCTTCTTGCAGGACAACTTCCTGACCGGCATCGGCGTGGGCGGCGTCCCGGCGAGCGCCGCCGTGTGCGCGCACATGAACTGCGTGGCGCCGCCGCCGCCGGTGGTGGCGGCGTGCCCGGCGAAGGGCGGCAGGGGTCGCCGCCGGCCGCCGTCGCAGTGCGGCGGCCGGAGGCGGTGA
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| Protein seq | MRMVAARRPRALMLLAAVLLVAVPVAAATLHPVDYLALQAVRRALSDMPGSRFFASWDFTGDPCGFAGVSCSGDGRVVTLALGDPRAGAPGLSGALPAAALARLSELASLSLVPGRVSGELPPAVAALPSLRFLALAGNLLSGDLPATFSPMLRTVDLSKNSFSGRIPPSLPLIRSLRTLVLSHNSLSGEIPKLVSSPLVHLDLRNNRLTGGVPPLPATLVYLSLAGNRFSGRVGGVLRRLPRLSFLDLGGNWFSGEVPGEVFSFRISYLQLRKNAFSGELRPSGRVPAGATVDLSHNALSGRVPAELAPAAAVYLNGNKFAGQVPREIAAAAEGGRMRVLFLQDNFLTGIGVGGVPASAAVCAHMNCVAPPPPVVAACPAKGGRGRRRPPSQCGGRRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0644100 | RBH | 0.0 | 0.0 | 1.450587 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42450 | RBH | 0.0 | 0.0 | 0.405425 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021830 | RBH | 0.0 | 0.0 | 0.654628 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021790 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021630 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0384300 | RBH | 0.021715 | 0.020706 | 0.009399 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022220 | RBH | 0.0 | 0.0 | 0.065858 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0404500 | RBH | 1.545664 | 0.0602515 | 3.7448075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021470 | RBH | 0.0 | 0.0 | 0.434514 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022040 | RBH | 0.0 | 0.0 | 0.0 |
