Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0642100 | OGI:11012980 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:25461246-25462998 | ||||||||
| Gene Symbol | OsFbox580, Os_F0096, OsFbox630, Os_F0318, OsFbox631, Os_F0064, OsFbox632, Os_F0391, OsFbox633, Os_F0413, OsFbox634, Os_F0372 | ||||||||||
| DNA seq | AAATCCAACTATCTTGATAGTTCTTCTTTCAAGATGAGACTACAAATCCAGATAGATGTACTAATACTCCTACTACAAAACCAGGTGAACTTTTCAGAAATTCCAGACAAACTCTGTGCAGAATTCCTAGTACTCTTGGATGATTAATTTGGGCATCATCCATCCTTCAACGTTCAGATTGTTCTACTCTCTCAGGTTTCAGTTTCCACTGTCAATACGCGCAATTCTTCGAGAACCATTGCGTTTTCAGCGAAGAATTTTACCAGACGAACTCCAAAATTCTCAGAATTCTCATCCAACCTGAATTGCAGGCTAACTCTTCTCAGATTGTACTGCAAGCAGGTGAAGGAGCAGGCAGTCAATCCAGGGATGAATCCAGAAACCTCATCGCCGTTATGGCGATGATCACCACGCTTTGATATGCTGTTTCGCATGAAATCATCGATCGACCTGTCGAAATCAAGCTGGGATTTTCTTTGAAAGAAATGCTGAACTTGCTTCGAGTTCTTGAAATAGTCAGGTGACACCGTGCTGATGAGATTCAGGTTGAGGTCGCAGAGCACTGGGCAGCAATGGAGCATGCTCGCGATCGCGGCGGCCTTCGCCGTCTTGCTCCAACGGTTGAAACCTCCGTCGAGCTCGAGGCGAGCAATGTTGGGGAAGAATACGCCATGGACAGCCATGCTCCGCCTTTAGCTTGAGCACCTTGACCTTGGTGAAGTTATGGATGAAACGAAGGTAATCACGTTGATGGAAGTAGTGGTTGAAGTGGAGGTGCACCATCTTCATGTCCGGCGCCGGCGAGGTTAGCTCGAACTGCGACCTCGCCGCCCCCTTGTATGTCAAGGATCGTAGCCTCGGCGCGTCGATAACGCTGCCGCTCATGCCGCCGTTGGTGAGGCAGTTGATCAGCGTGAGCGCGGTGGCAGCCGGGAAGCGGAGGCGGGTGGTGGAGGACATTGCCAGCTGCACCAGGAAGTGGACATCGCGGATGTTGGATATGAGATGGACGAACTCGAGGCGCACGGCGGCGAGCTCCGGCGCGGCGTCGATGATGCGGTGGAGATCGTCGATGTTCGTCGTGCAGTGTCGCAGCCGCAGCGTCTCCAGCCGCGGGAACGCGGCGGCGGCGGCGGCGGCCGCCGACGGCGCGAGGCTGCGGCAGTTGGTGAGGTCCAGAACGCGGAGGGTGTTCGACGGAAGGTTGGCGGGATTGATGCTGTAGATCCCGACGCCGTGGCTGCTCACGATGTTGCCCTTGTCGCCCCAGTGAGGGTGGACGGCGGCGACGCTGAGCTCCTCGACGCGGCGCGCCGCCGGGTGGGAGAGGACGGCGTCGAACACGTCGCGGTGGCCGCGGCGCTCGTCGTTCTCGCTGCTGAGGAGGAAGCTGGCGATCGAGCCTTTGTCCTCCTTGTCGCACTCGATGTGGACGGTGAGCCTCGTGACGCGGTGGTCGGCGGCGGCGGCGGCGGAGAGCGCCGCCTCGGCCGCACGGACGAAGGCGTCGCGGCGGGCGATCAGAGCCGCTCTTCCGATGTATCTGCTGCCGCAGGGGACGCGCGCGGCGAGGTTGACGGCGCCGGAGGAGCGCCAGAGCGCGCCGAACGGCCGCGAGAGCAAGCTGGTGGACGCGGCCTCCTTGGCGTTCGCGAAGTGGAGGATGCGGAGGACGAGTTCGTCGGGGAGGTCAGACAGGCGGTCATCGCCGGTGGCCATCGGTCGTCGACGTCGGCGGCGGCGGCGATCGGTT
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| CDS seq | ATGGCCACCGGCGATGACCGCCTGTCTGACCTCCCCGACGAACTCGTCCTCCGCATCCTCCACTTCGCGAACGCCAAGGAGGCCGCGTCCACCAGCTTGCTCTCGCGGCCGTTCGGCGCGCTCTGGCGCTCCTCCGGCGCCGTCAACCTCGCCGCGCGCGTCCCCTGCGGCAGCAGATACATCGGAAGAGCGGCTCTGATCGCCCGCCGCGACGCCTTCGTCCGTGCGGCCGAGGCGGCGCTCTCCGCCGCCGCCGCCGCCGACCACCGCGTCACGAGGCTCACCGTCCACATCGAGTGCGACAAGGAGGACAAAGGCTCGATCGCCAGCTTCCTCCTCAGCAGCGAGAACGACGAGCGCCGCGGCCACCGCGACGTGTTCGACGCCGTCCTCTCCCACCCGGCGGCGCGCCGCGTCGAGGAGCTCAGCGTCGCCGCCGTCCACCCTCACTGGGGCGACAAGGGCAACATCGTGAGCAGCCACGGCGTCGGGATCTACAGCATCAATCCCGCCAACCTTCCGTCGAACACCCTCCGCGTTCTGGACCTCACCAACTGCCGCAGCCTCGCGCCGTCGGCGGCCGCCGCCGCCGCCGCCGCGTTCCCGCGGCTGGAGACGCTGCGGCTGCGACACTGCACGACGAACATCGACGATCTCCACCGCATCATCGACGCCGCGCCGGAGCTCGCCGCCGTGCGCCTCGAGTTCGTCCATCTCATATCCAACATCCGCGATGTCCACTTCCTGGTGCAGCTGGCAATGTCCTCCACCACCCGCCTCCGCTTCCCGGCTGCCACCGCGCTCACGCTGATCAACTGCCTCACCAACGGCGGCATGAGCGGCAGCGTTATCGACGCGCCGAGGCTACGATCCTTGACATACAAGGGGGCGGCGAGGTCGCAGTTCGAGCTAACCTCGCCGGCGCCGGACATGAAGATGGTGCACCTCCACTTCAACCACTACTTCCATCAACGTGATTACCTTCGTTTCATCCATAACTTCACCAAGGTCAAGGTGCTCAAGCTAAAGGCGGAGCATGGCTGTCCATGGCGTATTCTTCCCCAACATTGCTCGCCTCGAGCTCGACGGAGGTTTCAACCGTTGGAGCAAGACGGCGAAGGCCGCCGCGATCGCGAGCATGCTCCATTGCTGCCCAGTGCTCTGCGACCTCAACCTGAATCTCATCAGCACGGTGTCACCTGA
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| Protein seq | MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRYIGRAALIARRDAFVRAAEAALSAAAAADHRVTRLTVHIECDKEDKGSIASFLLSSENDERRGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIYSINPANLPSNTLRVLDLTNCRSLAPSAAAAAAAAFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAEHGCPWRILPQHCSPRARRRFQPLEQDGEGRRDREHAPLLPSALRPQPESHQHGVT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0642100 | Os11t0642100-01 | Chr11 | 25461246 | 25462998 | - | irgsp1_rep | ||
| CDS seq | ATGGCCACCGGCGATGACCGCCTGTCTGACCTCCCCGACGAACTCGTCCTCCGCATCCTCCACTTCGCGAACGCCAAGGAGGCCGCGTCCACCAGCTTGCTCTCGCGGCCGTTCGGCGCGCTCTGGCGCTCCTCCGGCGCCGTCAACCTCGCCGCGCGCGTCCCCTGCGGCAGCAGATACATCGGAAGAGCGGCTCTGATCGCCCGCCGCGACGCCTTCGTCCGTGCGGCCGAGGCGGCGCTCTCCGCCGCCGCCGCCGCCGACCACCGCGTCACGAGGCTCACCGTCCACATCGAGTGCGACAAGGAGGACAAAGGCTCGATCGCCAGCTTCCTCCTCAGCAGCGAGAACGACGAGCGCCGCGGCCACCGCGACGTGTTCGACGCCGTCCTCTCCCACCCGGCGGCGCGCCGCGTCGAGGAGCTCAGCGTCGCCGCCGTCCACCCTCACTGGGGCGACAAGGGCAACATCGTGAGCAGCCACGGCGTCGGGATCTACAGCATCAATCCCGCCAACCTTCCGTCGAACACCCTCCGCGTTCTGGACCTCACCAACTGCCGCAGCCTCGCGCCGTCGGCGGCCGCCGCCGCCGCCGCCGCGTTCCCGCGGCTGGAGACGCTGCGGCTGCGACACTGCACGACGAACATCGACGATCTCCACCGCATCATCGACGCCGCGCCGGAGCTCGCCGCCGTGCGCCTCGAGTTCGTCCATCTCATATCCAACATCCGCGATGTCCACTTCCTGGTGCAGCTGGCAATGTCCTCCACCACCCGCCTCCGCTTCCCGGCTGCCACCGCGCTCACGCTGATCAACTGCCTCACCAACGGCGGCATGAGCGGCAGCGTTATCGACGCGCCGAGGCTACGATCCTTGACATACAAGGGGGCGGCGAGGTCGCAGTTCGAGCTAACCTCGCCGGCGCCGGACATGAAGATGGTGCACCTCCACTTCAACCACTACTTCCATCAACGTGATTACCTTCGTTTCATCCATAACTTCACCAAGGTCAAGGTGCTCAAGCTAAAGGCGGAGCATGGCTGTCCATGGCGTATTCTTCCCCAACATTGCTCGCCTCGAGCTCGACGGAGGTTTCAACCGTTGGAGCAAGACGGCGAAGGCCGCCGCGATCGCGAGCATGCTCCATTGCTGCCCAGTGCTCTGCGACCTCAACCTGAATCTCATCAGCACGGTGTCACCTGA
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| Protein seq | MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRYIGRAALIARRDAFVRAAEAALSAAAAADHRVTRLTVHIECDKEDKGSIASFLLSSENDERRGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIYSINPANLPSNTLRVLDLTNCRSLAPSAAAAAAAAFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAEHGCPWRILPQHCSPRARRRFQPLEQDGEGRRDREHAPLLPSALRPQPESHQHGVT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0642100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42270 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021620 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021000 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021500 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0382600 | RBH | 0.0218755 | 0.000517 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022060 | RBH | 0.0 | 0.0 | 0.070848 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0402900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005250 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021590 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021350 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021880 | RBH | 0.0 | 0.0 | 0.0 |
