Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0590900 | OGI:11065320 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:22444128-22445393 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTCCTAGACCTCATCCGCATTTTGACAAATGTAGAAAACTTTGTAAAAGTATTGGACAAACCATATGATGAGCACAACTTGTCTTTGCAGATCAGTATAGTCCGCAGGATAGCATTGCACAAGAGTAGCAACCTAGAAAAAAGCCATAACCTGGCTGCTAGCATGCCACAACTGAGATCATTCAATGCCATTAAGTGTTCCATTAGTTTGATGCCCCTACTTACAAGCTTCCAGGTCCTACGTGTGCTAGTACTGGAACATTGCGATATCACGGGAAGTTGTCACCTGAAGCATCTAGGGAAGCTACATCAGTTGAGGTACCTAGGACTAAGATACACATGTGTTGATTACCTACCAACAGAAATTGGTGCCCTTGTGCAACTTCAGGCACTCGACGTAAGGAACACAGGCTTGGCAGCACTACCTGCAAGTGTTGGCAAGCTAAACAAGCTAATGCGCCTATGCGTCGACAGAGAGACGAGAGTTCTTGCCAGTGTTGGGAATCTAACGTCCCTGCAAGAGCTATCTTTGGGCCTTGTATCGATCGATATCTGCTCAAACTTCGCTGTGGAGGTGCGCAAACTGTCAGACTTAAGGATCCTCAAGATTAGTTGGCTTGGTGAAACAGACAAGGGCTTGCTAAAAGCCTTGGTGGAGTCTCTATGTAGCTTGCAGAGAATCCAGCATCTGGAGATTTTGTTTGGCTCGTGGGTCCTTGTAAGCCACTGGGAAGGCTGGGAGCCCCCACGGCAACTCCACAAGTTTTGTATGGATGGCCTCCACGTCTTCTTGCCTCGGTTGCCATCATGGGTGAACTCCATGTGCATCCCACACCTCTCCTATCTCGAACTCCAAGTGCTGGCCATGGAGCCGCAGGACCTAGACGTCCTAGCGAGGATGCAAAAGCTCCGGTTCCTCCACGTGTACCTCAACACAAAATTTTCATGGACCGTCGCCGGTGGCGGGTTGTTTCCTAACCTGAGATACTGTTGCACAAACATAATGCTCACATTTCTACAGGGTGCCATGCCAATGGTCAAGCATGTTGAATTATGCGTACCAGCGTCCAGGGATAGTGTGACCAATGAGGTTGGCTTGGGAAACCTCCCTCTGCTCGATGTAGTCTCGGTATTGCTCGACTGCGAGAGTGCCACAGGCAGGGTGGTGGTGGAAGTGGAGGCGGCATTGAGGAGAGAGGTTAACGCGCACCCTAACAATCCCACCATTCAAGTTAACTGGTTTACGCACCTAAGGTTTGTTTAG
More
|
||||||||||
| CDS seq | ATGGTCCTAGACCTCATCCGCATTTTGACAAATGTAGAAAACTTTGTAAAAGTATTGGACAAACCATATGATGAGCACAACTTGTCTTTGCAGATCAGTATAGTCCGCAGGATAGCATTGCACAAGAGTAGCAACCTAGAAAAAAGCCATAACCTGGCTGCTAGCATGCCACAACTGAGATCATTCAATGCCATTAAGTGTTCCATTAGTTTGATGCCCCTACTTACAAGCTTCCAGGTCCTACGTGTGCTAGTACTGGAACATTGCGATATCACGGGAAGTTGTCACCTGAAGCATCTAGGGAAGCTACATCAGTTGAGGTACCTAGGACTAAGATACACATGTGTTGATTACCTACCAACAGAAATTGGTGCCCTTGTGCAACTTCAGGCACTCGACGTAAGGAACACAGGCTTGGCAGCACTACCTGCAAGTGTTGGCAAGCTAAACAAGCTAATGCGCCTATGCGTCGACAGAGAGACGAGAGTTCTTGCCAGTGTTGGGAATCTAACGTCCCTGCAAGAGCTATCTTTGGGCCTTGTATCGATCGATATCTGCTCAAACTTCGCTGTGGAGGTGCGCAAACTGTCAGACTTAAGGATCCTCAAGATTAGTTGGCTTGGTGAAACAGACAAGGGCTTGCTAAAAGCCTTGGTGGAGTCTCTATGTAGCTTGCAGAGAATCCAGCATCTGGAGATTTTGTTTGGCTCGTGGGTCCTTGTAAGCCACTGGGAAGGCTGGGAGCCCCCACGGCAACTCCACAAGTTTTGTATGGATGGCCTCCACGTCTTCTTGCCTCGGTTGCCATCATGGGTGAACTCCATGTGCATCCCACACCTCTCCTATCTCGAACTCCAAGTGCTGGCCATGGAGCCGCAGGACCTAGACGTCCTAGCGAGGATGCAAAAGCTCCGGTTCCTCCACGTGTACCTCAACACAAAATTTTCATGGACCGTCGCCGGTGGCGGGTTGTTTCCTAACCTGAGATACTGTTGCACAAACATAATGCTCACATTTCTACAGGGTGCCATGCCAATGGTCAAGCATGTTGAATTATGCGTACCAGCGTCCAGGGATAGTGTGACCAATGAGGTTGGCTTGGGAAACCTCCCTCTGCTCGATGTAGTCTCGGTATTGCTCGACTGCGAGAGTGCCACAGGCAGGGTGGTGGTGGAAGTGGAGGCGGCATTGAGGAGAGAGGTTAACGCGCACCCTAACAATCCCACCATTCAAGTTAACTGGTTTACGCACCTAAGGTTTGTTTAG
More
|
||||||||||
| Protein seq | MVLDLIRILTNVENFVKVLDKPYDEHNLSLQISIVRRIALHKSSNLEKSHNLAASMPQLRSFNAIKCSISLMPLLTSFQVLRVLVLEHCDITGSCHLKHLGKLHQLRYLGLRYTCVDYLPTEIGALVQLQALDVRNTGLAALPASVGKLNKLMRLCVDRETRVLASVGNLTSLQELSLGLVSIDICSNFAVEVRKLSDLRILKISWLGETDKGLLKALVESLCSLQRIQHLEILFGSWVLVSHWEGWEPPRQLHKFCMDGLHVFLPRLPSWVNSMCIPHLSYLELQVLAMEPQDLDVLARMQKLRFLHVYLNTKFSWTVAGGGLFPNLRYCCTNIMLTFLQGAMPMVKHVELCVPASRDSVTNEVGLGNLPLLDVVSVLLDCESATGRVVVEVEAALRREVNAHPNNPTIQVNWFTHLRFV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0590900 | Os11t0590900-00 | Chr11 | 22444128 | 22445393 | + | irgsp1_rep | ||
| CDS seq | ATGGTCCTAGACCTCATCCGCATTTTGACAAATGTAGAAAACTTTGTAAAAGTATTGGACAAACCATATGATGAGCACAACTTGTCTTTGCAGATCAGTATAGTCCGCAGGATAGCATTGCACAAGAGTAGCAACCTAGAAAAAAGCCATAACCTGGCTGCTAGCATGCCACAACTGAGATCATTCAATGCCATTAAGTGTTCCATTAGTTTGATGCCCCTACTTACAAGCTTCCAGGTCCTACGTGTGCTAGTACTGGAACATTGCGATATCACGGGAAGTTGTCACCTGAAGCATCTAGGGAAGCTACATCAGTTGAGGTACCTAGGACTAAGATACACATGTGTTGATTACCTACCAACAGAAATTGGTGCCCTTGTGCAACTTCAGGCACTCGACGTAAGGAACACAGGCTTGGCAGCACTACCTGCAAGTGTTGGCAAGCTAAACAAGCTAATGCGCCTATGCGTCGACAGAGAGACGAGAGTTCTTGCCAGTGTTGGGAATCTAACGTCCCTGCAAGAGCTATCTTTGGGCCTTGTATCGATCGATATCTGCTCAAACTTCGCTGTGGAGGTGCGCAAACTGTCAGACTTAAGGATCCTCAAGATTAGTTGGCTTGGTGAAACAGACAAGGGCTTGCTAAAAGCCTTGGTGGAGTCTCTATGTAGCTTGCAGAGAATCCAGCATCTGGAGATTTTGTTTGGCTCGTGGGTCCTTGTAAGCCACTGGGAAGGCTGGGAGCCCCCACGGCAACTCCACAAGTTTTGTATGGATGGCCTCCACGTCTTCTTGCCTCGGTTGCCATCATGGGTGAACTCCATGTGCATCCCACACCTCTCCTATCTCGAACTCCAAGTGCTGGCCATGGAGCCGCAGGACCTAGACGTCCTAGCGAGGATGCAAAAGCTCCGGTTCCTCCACGTGTACCTCAACACAAAATTTTCATGGACCGTCGCCGGTGGCGGGTTGTTTCCTAACCTGAGATACTGTTGCACAAACATAATGCTCACATTTCTACAGGGTGCCATGCCAATGGTCAAGCATGTTGAATTATGCGTACCAGCGTCCAGGGATAGTGTGACCAATGAGGTTGGCTTGGGAAACCTCCCTCTGCTCGATGTAGTCTCGGTATTGCTCGACTGCGAGAGTGCCACAGGCAGGGTGGTGGTGGAAGTGGAGGCGGCATTGAGGAGAGAGGTTAACGCGCACCCTAACAATCCCACCATTCAAGTTAACTGGTTTACGCACCTAAGGTTTGTTTAG
More
|
|||||||
| Protein seq | MVLDLIRILTNVENFVKVLDKPYDEHNLSLQISIVRRIALHKSSNLEKSHNLAASMPQLRSFNAIKCSISLMPLLTSFQVLRVLVLEHCDITGSCHLKHLGKLHQLRYLGLRYTCVDYLPTEIGALVQLQALDVRNTGLAALPASVGKLNKLMRLCVDRETRVLASVGNLTSLQELSLGLVSIDICSNFAVEVRKLSDLRILKISWLGETDKGLLKALVESLCSLQRIQHLEILFGSWVLVSHWEGWEPPRQLHKFCMDGLHVFLPRLPSWVNSMCIPHLSYLELQVLAMEPQDLDVLARMQKLRFLHVYLNTKFSWTVAGGGLFPNLRYCCTNIMLTFLQGAMPMVKHVELCVPASRDSVTNEVGLGNLPLLDVVSVLLDCESATGRVVVEVEAALRREVNAHPNNPTIQVNWFTHLRFV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0590900 | RBH | 0.192847 | 0.0 | 0.471341 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37870 | RBH | 0.186851 | 0.0 | 0.195428 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018860 | RBH | 0.033359 | 2.025336 | 0.335204 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018950 | RBH | 0.000000 | 0.810689 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018740 | RBH | 0.0 | 6.808437 | 0.239879 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018490 | RBH | 0.0 | 0.021229 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018780 | RBH | 1.520858 | 2.421318 | 1.408740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344600 | SBH | 0.028829 | 0.8824205 | 0.0846545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019350 | RBH | 0.0 | 0.000000 | 0.134400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | RBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019140 | RBH | 0.137511 | 0.276715 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019290 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018760 | RBH | 0.556514 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018630 | RBH | 0.000000 | 2.546901 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018800 | RBH | 0.006649 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019020 | RBH | 0.0 | 0.908115 | 0.320162 |
