Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0567800 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:21156776-21159062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTTGCTTCCACAGTTCCACTTGCATCTTGGAGCCATTCACACGCTCCCACCATGCATCCCAAGTCATCACTGCTGTTCTTCCTCATGATCGGAGCATTGCTCACCAATGCCATGGCAAACCATGCACCGGCTCCAGCCGCCGTCAACTGCGTGCCACGAGAGAGGGAAGCCCTGCTGGCCTTCAAGCGAGGCATCACTGGCGACCCCGCAGGGCGCCTCGCCTCGTGGAAGGAAGACGACCATGACTGCTGCCGGTGGAGGGGCGTTAGGTGCAGCGACAACCTCATCGGTCATGTCCTCGAGCTCCACCTCCAGAGTAACCTCACCGGTGTTGTTTATGTAGATTATAGCCCTTTGGAGTTCAACGCGGTAGCTTTGGTCGGCCGGATAACGTCTTCTTTGCTTTCTCTGGAGCATCTAGAGCACCTTGACCTCAGCAACAACAACCTCACGGGGCCGGATGGCCGTTTCCCGGTGTTTGTGGCCTCCCTTCGCAACCTACAATATCTTGATCTCTCTGGTTTGGGATTCACTGGTATGGTGCCATATCAGCTTGGTAACCTTTCAAAGCTGGAATTTCTTGACCTTTCGGGAACAGGTATGCAATCAGCAGATATATCATGGCTAACACGTCTACAATGGTTGAAGTACCTTTACTTGTCATCAGTAAATCTTAGCGCGATATCTGATTGGGCTCATGTAGTAAACAAGATCCCATCACTAACGGTGCTTTCTCTCTCTGGTTGCTCACTTACACGTGTAGACCACTCGCTCAAACACGTAAACCTCACTAGACTTGAGAAGCTCCATCTCTCTGGCAACGATTTTAGCCACCCTTTGTCATCTTGCTGGTTTTGGATCTTGAAAACCCTCATCTACCTCGACCTTGAATCAACCGGTTTATATGGTCGATTTCCAAATGCAATAACCAACATGACGTCCCTCCAGGTCTTGGATTTTTCAAGAAACAATAATGCGGGTATTTTGGAACCAATTCTGCTAAGGAACCTTTGCAACTTAGAAAGTCTGAACCTTCAATTGGGCCTCTTGTCTGGTAACATGACAGAGCTGCTAGAGAGTTTGAGTCATTGCTCACCAAACAAATTGCGGAAATTATATTTGTCCAACAACAATATTACGGGAACTCTACCAGCTCAGAGTATGGGCCAATTTACCAGCTTAGCCAATATTGGTTTCTCTTTCAACCAGCTCACAGGGCACGTGCCTCCTGAGATTGGTAAACTAGCTAGTTTGACTCACCTTGACCTAAGTGAAAATAAATTAACAGGAACCATCACAGATGAACACTTCGGTGGTCTAGTGAGCTTAACATACATTGATTTATCTTACAACAAACTCAAGATTGTTATAGACCCTGAATGGTTACCACCATTTAGGCTTGAAACTGCGTATTTTGCATCTTGTCAAATGGGTCCTCTGTTTCCTGCCTGGCTCCGGTGGTCATCCGACATTGATATGATTGATATTTCAAGCGCTAATATAATAGACGAGTTTCCAGATTGGGTCTCTACAGCATTTTCAAAGGCCATATATTTGGACATGTCTAATAACAAAATCAGCGGTAACCTGCCAAAAAATATGAAAATCATGTCTCTGGAAGAACTCTATCTAAATTCAAACAGAATAATCGGTGAAGTACCAACGTTGCCGACAAACCTCACCTATTTGGACATCTCAAATAACATACTATCAGGGCTTGTCGCATCAAACTTCGGAGCGCCAAGACTAGATACTATGAATCTATCCTCAAACAGCATCCAAGGCCAGATTCCAAGTTCGATTTGCAGGTTGAAATATTTGAGCACCTTGGATTTATCCAACAATCTTTTGAACGGGAAACTTCCTCGATGCATTGGGATGAGAAATCTTCAGAAGCTTCTACTAAGTAATAATAACTTATCTGGCACATTCCCATCTTTACTGCAAGGCTGCACACTGCTACGTTATATAGACCTATCATGGAATAGGTTTTATGGAAGATTACCGAGTTGGATTGGAGACTTCCAAGAATTAGTTTCTCTACAACTGAGGAACAATACTTTTTCTTGGTAATGTTCTTTCACTGAACATAGCAAGAATTACTCTATGTATATGTTAGGTGCCTCAAGGAAAGTAGTCGTATTCAGAGGTACAGCAGCGTTGATGAGAATGCCGTGCCATGTTCAATGATGAGGATCAAACTGCTTATCTGGTTTGGGCCTCCTGAAAATACTTGCATCAAAGCAACTATATAATAAAGTTAGAGGTCTGTCAGTAACCTTCTGC
More
|
||||||||||
| CDS seq | ATGCATCCCAAGTCATCACTGCTGTTCTTCCTCATGATCGGAGCATTGCTCACCAATGCCATGGCAAACCATGCACCGGCTCCAGCCGCCGTCAACTGCGTGCCACGAGAGAGGGAAGCCCTGCTGGCCTTCAAGCGAGGCATCACTGGCGACCCCGCAGGGCGCCTCGCCTCGTGGAAGGAAGACGACCATGACTGCTGCCGGTGGAGGGGCGTTAGATTATAG |
||||||||||
| Protein seq | MHPKSSLLFFLMIGALLTNAMANHAPAPAAVNCVPREREALLAFKRGITGDPAGRLASWKEDDHDCCRWRGVRL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0567800 | Os11t0567800-01 | Chr11 | 21156776 | 21159062 | + | irgsp1_rep | ||
| CDS seq | ATGCATCCCAAGTCATCACTGCTGTTCTTCCTCATGATCGGAGCATTGCTCACCAATGCCATGGCAAACCATGCACCGGCTCCAGCCGCCGTCAACTGCGTGCCACGAGAGAGGGAAGCCCTGCTGGCCTTCAAGCGAGGCATCACTGGCGACCCCGCAGGGCGCCTCGCCTCGTGGAAGGAAGACGACCATGACTGCTGCCGGTGGAGGGGCGTTAGATTATAG
More
|
|||||||
| Protein seq | MHPKSSLLFFLMIGALLTNAMANHAPAPAAVNCVPREREALLAFKRGITGDPAGRLASWKEDDHDCCRWRGVRL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0567800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017880 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017660 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017660 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0330900 | RBH | 0.196764 | 0.2316295 | 0.0445685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018160 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0343000 | RBH | 0.122468 | 0.338799 | 0.0122495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017440 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017560 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017610 | SBH | 0.0 | 0.0 | 0.121813 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017930 | RBH | 0.0 | 0.0 | 0.0 |
