Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0492200 | OGI:11051570 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:17426180-17428252 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCTTGGATCAAGGGTGTAAAACTCCCGGCCGATGCGTTCGACACTCTCCATTTGGCGGATATCAAGGTATTTGAGGGAAGGTAGCTCACCGAGCGACATAGGCGTAGCACTAATCGTATTAGCTTGGAAAATGATGTACTGCCCAACCAACTGGGATATATCTTGCAGTTAAAGTTTTGTAGTGTCAATTCTCTAAGGCTTCGATGATGAGGCCGTAGACTCTCAAGTAGCAAGTCAACAGATACTGCAATAATAGCTTGATTAGAACCAGCATTCTGTGTGTGTGCATCATTTATGCTCGCCGTAAAGTTCAATTCTAGTTCCTGGAGATCCTTTTTGCAATGTAACAGGGCTTCGTTTGCATCTATGATACTAGATACATTACAAAGTCCATCTATGCGCAACTTTCTTATCTTGTGCATATTCCTTAGCTCCCTTATGTTAAAGAAGCAACCACAATTGCAAAGATGTATTACAGGCAAAGCCTGCAAGTTAACTAGGCGCCCAATTCCATGTAGACTACAAGCTATAAAATTCAGCGTTTGCAAATTGAATAGCTTGGACACAGAGTTGGAAATTACTAATTCTACAGCATTGCTATGTCCTAGAAATTCCAAGTGGCGTAGCAGTTTCATTTCACCTATGCAGTCAAGCAACACCTTTGCAAAACCGTCCTCGGTGACTTGAATGACCCGAAACTTCTTACAGTTCAAAAACAATGCTTCTGGATTTTCAATGTCAATATTCCCTAGTGTCACAACGGCTCTGAGAGACTCTGAGGAATTTGATATTTTGATACTCTTGGTATGAGGCACTATGGACATATACCGAGTACCCAATGGAATTTCAGTTGATTTATCTCCCTCGGGCCTAAAAAACTCATCCCCAGCAAGAAAACATGCAAGATCATGGACAAGATCATGCATGACAAATGTGTGTCCATGCATATAGTTTTGAAGCAATGATCGCTGAACTAATTCAGTGAAATATAAACTTCCAATTTCTTCCCAGTTGCCAATTCCATCACAGTGAAGTAAATCAAGTGATTTCCACAACCGAGATACCATAAATACATTAAAGGGAGAGTCTTTTGGATATAGAGAAAGGGAAACAAAGCAATGTTTCAAGTATATTGGCATGTGCTTGTAGCTCAACTCTAGAGCTGGCAAAACCTCCTTATGTGACTGCTCCAAGTTCCATAGCTCACTGTCTAAGACATCTCTCCATTTCTTTTCATTGGTTTCGAAGCGCAATATGCTCCCTAGAGTCTTGATTGCCAATGGTAACCCTTTGCACTTCTCGGCAATCCTCCTGCCGATCTCTACCAGGTTAGAAGGGATGCCACTCCCTTGGTTAGCATAAGCTTCTTGCTTGAACAATGTCCAGCTGTCATCAGGACTCAGGCAATTTAGGTTGTAGAAATCAGGCATAGTCTGCACTAACCTTGCAACTCTCTCACTGCGGGTGGTTACTACAATGTTGCAAATTTCTGTGGTGTTCATCGGCAAGCACAACAGTTCCCAACAATCCCTTCGCTCACTCCATACATCATCCAACACAAGTAAAACCTTCTTACCCTTAATTTCAGCTACCAGAATCTGTTGAAGAATATCAAGACTATGTTCAGGTAAACCACACTCCTCCTTCTTTAGTGACTGAATGATGCCCTTTGTTATGTTAATAACATCAAATTGTTCTGAGACACAAACCCATGCATGCTTATCAAAAGATCCGCGCATCCTTGAGTCATTATATACAAGTTGTGCTAGAGCTGTCTTTCCTACACCACCCATGCCGACAATAGCTAGAACAGAAATTGGATTAGCTACACTGTCACCATCTCTGGGAAGCAGTTTTTCCATTATGGTGTTCTTATCTCCCTCTCTTCCTAGAATACTCTTCGCAAATACAAGAGAGCTAGTCTTCCGTAACATACTAATATGAGGAATAATCCTTCTCTCTCCATCATTATCCGACAAAGTAAAGTTGTCAGAATAATATTTGATCTCATGAAATCTCTCAATAAGCTTTCTTGTTTTGACAGCCAATTCATCTGGAACTGCTACCAT
More
|
||||||||||
| CDS seq | ATGGTAGCAGTTCCAGATGAATTGGCTGTCAAAACAAGAAAGCTTATTGAGAGATTTCATGAGATCAAATATTATTCTGACAACTTTACTTTGTCGGATAATGATGGAGAGAGAAGGATTATTCCTCATATTAGTATGTTACGGAAGACTAGCTCTCTTGTATTTGCGAAGAGTATTCTAGGAAGAGAGGGAGATAAGAACACCATAATGGAAAAACTGCTTCCCAGAGATGGTGACAGTGTAGCTAATCCAATTTCTGTTCTAGCTATTGTCGGCATGGGTGGTGTAGGAAAGACAGCTCTAGCACAACTTGTATATAATGACTCAAGGATGCGCGGATCTTTTGATAAGCATGCATGGGTTTGTGTCTCAGAACAATTTGATGTTATTAACATAACAAAGGGCATCATTCAGTCACTAAAGAAGGAGGAGTGTGGTTTACCTGAACATAGTCTTGATATTCTTCAACAGATTCTGGTAGCTGAAATTAAGGGTAAGAAGGTTTTACTTGTGTTGGATGATGTATGGAGTGAGCGAAGGGATTGTTGGGAACTGTTGTGCTTGCCGATGAACACCACAGAAATTTGCAACATTGTAGTAACCACCCGCAGTGAGAGAGTTGCAAGGTTAGTGCAGACTATGCCTGATTTCTACAACCTAAATTGCCTGAGTCCTGATGACAGCTGGACATTGTTCAAGCAAGAAGCTTATGCTAACCAAGGGAGTGGCATCCCTTCTAACCTGGTAGAGATCGGCAGGAGGATTGCCGAGAAGTGCAAAGGGTTACCATTGGCAATCAAGACTCTAGGGAGCATATTGCGCTTCGAAACCAATGAAAAGAAATGGAGAGATGTCTTAGACAGTGAGCTATGGAACTTGGAGCAGTCACATAAGGAGGTTTTGCCAGCTCTAGAGTTGAGCTACAAGCACATGCCAATATACTTGAAACATTGCTTTGTTTCCCTTTCTCTATATCCAAAAGACTCTCCCTTTAATGTATTTATGGTATCTCGGTTGTGGAAATCACTTGATTTACTTCACTGTGATGGAATTGGCAACTGGGAAGAAATTGGAAGTTTATATTTCACTGAATTAGTTCAGCGATCATTGCTTCAAAACTATATGCATGGACACACATTTGTCATGCATGATCTTGTCCATGATCTTGCATGTTTTCTTGCTGGGGATGAGTTTTTTAGGCCCGAGGGAGATAAATCAACTGAAATTCCATTGGGTACTCGGTATATGTCCATAGTGCCTCATACCAAGAGTATCAAAATATCAAATTCCTCAGAGTCTCTCAGAGCCGTTGTGACACTAGGGAATATTGACATTGAAAATCCAGAAGCATTGTTTTTGAACTGTAAGAAGTTTCGGGTCATTCAAGTCACCGAGGACGGTTTTGCAAAGGTGTTGCTTGACTGCATAGGTGAAATGAAACTGCTACGCCACTTGGAATTTCTAGGACATAGCAATGCTGTAGAATTAGTAATTTCCAACTCTGTGTCCAAGCTATTCAATTTGCAAACGCTGAATTTTATAGCTTGTAGTCTACATGGAATTGGGCGCCTAGTTAACTTGCAGGCTTTGCCTGTAATACATCTTTGCAATTGTGGTTGCTTCTTTAACATAAGGGAGCTAAGGAATATGCACAAGATAAGAAAGTTGCGCATAGATGGACTTTGTAATGTATCTAGTATCATAGATGCAAACGAAGCCCTGTTACATTGCAAAAAGGATCTCCAGGAACTAGAATTGAACTTTACGGCGAGCATAAATGATGCACACACACAGAATGCTGGTTCTAATCAAGCTATTATTGCAGTATCTGTTGACTTGCTACTTGAGAGTCTACGGCCTCATCATCGAAGCCTTAGAGAATTGACACTACAAAACTTTAACTGCAAGATATATCCCAGTTGGTTGGGCAGTACATCATTTTCCAAGCTAATACGATTAGTGCTACGCCTATGTCGCTCGGTGAGCTACCTTCCCTCAAATACCTTGATATCCGCCAAATGGAGAGTGTCGAACGCATCGGCCGGGAGTTTTACACCCTTGATCCAAGAGTGA
More
|
||||||||||
| Protein seq | MVAVPDELAVKTRKLIERFHEIKYYSDNFTLSDNDGERRIIPHISMLRKTSSLVFAKSILGREGDKNTIMEKLLPRDGDSVANPISVLAIVGMGGVGKTALAQLVYNDSRMRGSFDKHAWVCVSEQFDVINITKGIIQSLKKEECGLPEHSLDILQQILVAEIKGKKVLLVLDDVWSERRDCWELLCLPMNTTEICNIVVTTRSERVARLVQTMPDFYNLNCLSPDDSWTLFKQEAYANQGSGIPSNLVEIGRRIAEKCKGLPLAIKTLGSILRFETNEKKWRDVLDSELWNLEQSHKEVLPALELSYKHMPIYLKHCFVSLSLYPKDSPFNVFMVSRLWKSLDLLHCDGIGNWEEIGSLYFTELVQRSLLQNYMHGHTFVMHDLVHDLACFLAGDEFFRPEGDKSTEIPLGTRYMSIVPHTKSIKISNSSESLRAVVTLGNIDIENPEALFLNCKKFRVIQVTEDGFAKVLLDCIGEMKLLRHLEFLGHSNAVELVISNSVSKLFNLQTLNFIACSLHGIGRLVNLQALPVIHLCNCGCFFNIRELRNMHKIRKLRIDGLCNVSSIIDANEALLHCKKDLQELELNFTASINDAHTQNAGSNQAIIAVSVDLLLESLRPHHRSLRELTLQNFNCKIYPSWLGSTSFSKLIRLVLRLCRSVSYLPSNTLISAKWRVSNASAGSFTPLIQE |
||||||||||
| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0492200 | Os11t0492200-00 | Chr11 | 17426180 | 17428252 | - | irgsp1_rep | ||
| CDS seq | ATGGTAGCAGTTCCAGATGAATTGGCTGTCAAAACAAGAAAGCTTATTGAGAGATTTCATGAGATCAAATATTATTCTGACAACTTTACTTTGTCGGATAATGATGGAGAGAGAAGGATTATTCCTCATATTAGTATGTTACGGAAGACTAGCTCTCTTGTATTTGCGAAGAGTATTCTAGGAAGAGAGGGAGATAAGAACACCATAATGGAAAAACTGCTTCCCAGAGATGGTGACAGTGTAGCTAATCCAATTTCTGTTCTAGCTATTGTCGGCATGGGTGGTGTAGGAAAGACAGCTCTAGCACAACTTGTATATAATGACTCAAGGATGCGCGGATCTTTTGATAAGCATGCATGGGTTTGTGTCTCAGAACAATTTGATGTTATTAACATAACAAAGGGCATCATTCAGTCACTAAAGAAGGAGGAGTGTGGTTTACCTGAACATAGTCTTGATATTCTTCAACAGATTCTGGTAGCTGAAATTAAGGGTAAGAAGGTTTTACTTGTGTTGGATGATGTATGGAGTGAGCGAAGGGATTGTTGGGAACTGTTGTGCTTGCCGATGAACACCACAGAAATTTGCAACATTGTAGTAACCACCCGCAGTGAGAGAGTTGCAAGGTTAGTGCAGACTATGCCTGATTTCTACAACCTAAATTGCCTGAGTCCTGATGACAGCTGGACATTGTTCAAGCAAGAAGCTTATGCTAACCAAGGGAGTGGCATCCCTTCTAACCTGGTAGAGATCGGCAGGAGGATTGCCGAGAAGTGCAAAGGGTTACCATTGGCAATCAAGACTCTAGGGAGCATATTGCGCTTCGAAACCAATGAAAAGAAATGGAGAGATGTCTTAGACAGTGAGCTATGGAACTTGGAGCAGTCACATAAGGAGGTTTTGCCAGCTCTAGAGTTGAGCTACAAGCACATGCCAATATACTTGAAACATTGCTTTGTTTCCCTTTCTCTATATCCAAAAGACTCTCCCTTTAATGTATTTATGGTATCTCGGTTGTGGAAATCACTTGATTTACTTCACTGTGATGGAATTGGCAACTGGGAAGAAATTGGAAGTTTATATTTCACTGAATTAGTTCAGCGATCATTGCTTCAAAACTATATGCATGGACACACATTTGTCATGCATGATCTTGTCCATGATCTTGCATGTTTTCTTGCTGGGGATGAGTTTTTTAGGCCCGAGGGAGATAAATCAACTGAAATTCCATTGGGTACTCGGTATATGTCCATAGTGCCTCATACCAAGAGTATCAAAATATCAAATTCCTCAGAGTCTCTCAGAGCCGTTGTGACACTAGGGAATATTGACATTGAAAATCCAGAAGCATTGTTTTTGAACTGTAAGAAGTTTCGGGTCATTCAAGTCACCGAGGACGGTTTTGCAAAGGTGTTGCTTGACTGCATAGGTGAAATGAAACTGCTACGCCACTTGGAATTTCTAGGACATAGCAATGCTGTAGAATTAGTAATTTCCAACTCTGTGTCCAAGCTATTCAATTTGCAAACGCTGAATTTTATAGCTTGTAGTCTACATGGAATTGGGCGCCTAGTTAACTTGCAGGCTTTGCCTGTAATACATCTTTGCAATTGTGGTTGCTTCTTTAACATAAGGGAGCTAAGGAATATGCACAAGATAAGAAAGTTGCGCATAGATGGACTTTGTAATGTATCTAGTATCATAGATGCAAACGAAGCCCTGTTACATTGCAAAAAGGATCTCCAGGAACTAGAATTGAACTTTACGGCGAGCATAAATGATGCACACACACAGAATGCTGGTTCTAATCAAGCTATTATTGCAGTATCTGTTGACTTGCTACTTGAGAGTCTACGGCCTCATCATCGAAGCCTTAGAGAATTGACACTACAAAACTTTAACTGCAAGATATATCCCAGTTGGTTGGGCAGTACATCATTTTCCAAGCTAATACGATTAGTGCTACGCCTATGTCGCTCGGTGAGCTACCTTCCCTCAAATACCTTGATATCCGCCAAATGGAGAGTGTCGAACGCATCGGCCGGGAGTTTTACACCCTTGATCCAAGAGTGA
More
|
|||||||
| Protein seq | MVAVPDELAVKTRKLIERFHEIKYYSDNFTLSDNDGERRIIPHISMLRKTSSLVFAKSILGREGDKNTIMEKLLPRDGDSVANPISVLAIVGMGGVGKTALAQLVYNDSRMRGSFDKHAWVCVSEQFDVINITKGIIQSLKKEECGLPEHSLDILQQILVAEIKGKKVLLVLDDVWSERRDCWELLCLPMNTTEICNIVVTTRSERVARLVQTMPDFYNLNCLSPDDSWTLFKQEAYANQGSGIPSNLVEIGRRIAEKCKGLPLAIKTLGSILRFETNEKKWRDVLDSELWNLEQSHKEVLPALELSYKHMPIYLKHCFVSLSLYPKDSPFNVFMVSRLWKSLDLLHCDGIGNWEEIGSLYFTELVQRSLLQNYMHGHTFVMHDLVHDLACFLAGDEFFRPEGDKSTEIPLGTRYMSIVPHTKSIKISNSSESLRAVVTLGNIDIENPEALFLNCKKFRVIQVTEDGFAKVLLDCIGEMKLLRHLEFLGHSNAVELVISNSVSKLFNLQTLNFIACSLHGIGRLVNLQALPVIHLCNCGCFFNIRELRNMHKIRKLRIDGLCNVSSIIDANEALLHCKKDLQELELNFTASINDAHTQNAGSNQAIIAVSVDLLLESLRPHHRSLRELTLQNFNCKIYPSWLGSTSFSKLIRLVLRLCRSVSYLPSNTLISAKWRVSNASAGSFTPLIQE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29980 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014460 | SBH | 0.083653 | 0.000000 | 0.225693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014400 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014190 | SBH | 0.060028 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014470 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0271300 | RBH | 0 | 0.0175305 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014730 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0284100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014660 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014640 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014280 | SBH | 0.000000 | 1.340481 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014140 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014370 | RBH | 0.000000 | 0.0 | 0.0 |
