Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0483950 | OGI:11049930 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:17031951-17034202 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACCAACATTTTGAAACGAATTTGTCCTTGCTTTGTTCCCCCAGAGGATGAGTGGGCATTTGATCTCCTCTACTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGTAATTTTCCTGTCAATGTACATGCCATATTTTCTCCGTAACTCATCAGATTGCATTGTTTTGACCGATCTTGCGATTCTGTTGTGATTCAGGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGAATCCTCATTTCCTTACTTAACTTGTCAAACTTTTCCGATATGATGTCAGCCTTGTCAACAATCCTCTGTTCATGAACAGAAAATCAGCTACTATGAAATTGCCAAATGCTGATCAGTTCTGACATGCTATGAAATTGTCGTTTATTCTTCCAATGCCGACGTCAGCTGTCGTCGCCGGCCACCGTGCTGGAGCCGGGGATCTTGGAAAGCCGCGCCCGCTTCATCACCTTCCTCAGCCTGTCCACGTCCTGCCACCTCCCGGCCTCGGCGTACATGTTGGAGAGCACCACGTAGACGCCATGGTTGCCGGGATCCAGCTTGAGCATCTCCTGCACCGCCCTCTCGGCGACGTCGATGTCGCCGTGGTTCTTGCAGGCGTTCAGCAGGGCTCCCCAGATCACCGTGTCGGCGTCGCAGGTCGTCATGCCACGGATCATCTCCTCGGCTTCCGTGAGGAGGCCGCTCCGGCCGAGGAGGTCGACCATGCAGCCGTAGTGCTGGATGGTCGGCGCCACCGCGAAGTCCTTCTCCATGGACGCGAACACGCGGCGGGCCTCGTCGAGACGCCCCGTGCAGCCGTAGGCCGACAGGACGCCGACGAGCGTGGCACCGTTCGGCGGCACGCCGTCCCGCCTCATCCGGTGGAACGTAGCAAGGGCGACCTCGCCGTGGCCGTGGTGCGCCAGCCCGGTGATCAGGGCGTTCCACGTCGCCGTTTGCCGCTCGGGCATCCGGTCAAACACCGCCGTCGCCTCCTCCATGGCGCCGGTCTTGGCGTACATGTCGACCAGCGCCGTCCCGAGGATGGCCCCCACCACGGGCGCCGTCACCCGCCTCGACTCCATGAGCTCGTGCACGCGCCGCCCCATCTCGAGCCCGCGCGACCCCGACCGCGCGCACGACGACAGCACGGACGCCAGCGCTGCGCCGTGGGGCTCGATCCCGTCGCCGACCATCTCCTCGAACGACCGCATGGCGTCCTCGTGCATCCCGTTTTGCGCGTACCCGGACACCATGGTGGTGCACACCACCGCGCTCCGCTCGGGCAATCCGTCGAACACCCTGCGCGCGAGGGGGACGAGGCCCGCGAGCGAGTACGCCCGGACGAGGCCGTTGGCGACGTAGGCGTCGCGCTCCAGCCCGTGCCTGACGGCGAGCGCGTGGAGCTGCTCGGAGGCGCGGAGGGGGAGGCGGGCGGATGCCTTGAGGAGGAAAGTGAAGGTGTGCCTGCCGGGAGAGTACGAGCCGCCGCCGCCGCCGCTGCCGCGGCGGAGGAGGGAGAAGAAGCGGAGGGCGGAGGCCGGGTCGGGGGAGGAGGCGAGGGCGCGGAGCGTGATGTTGAGCATGAAGGAGTTTGGGGCGCAGGGGAGGGAGGCGAGGAGGCGGAGCACGGCTCCCGGAGGGGAGAGCGCGGCGTGGGCGGCGAGGAGGCGGGACGCCGCGAAGGCGTCGTCGGCGAGGCGGCCGGAGACGAGCATGGCCGCGTGGACGGCGGCGAGCGCGCGCGGGGTCGCGCAGCGGTCGGCCAGGAGGGACAGGTTCGGCCGGCGCCGGATGCCGCCGCGGGCGCCCACGGCGGCGGCGGCGGCGGCGGCCATTGGCGTCGCGTGC
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| CDS seq | ATGGCCGCCGCCGCCGCCGCCGCCGTGGGCGCCCGCGGCGGCATCCGGCGCCGGCCGAACCTGTCCCTCCTGGCCGACCGCTGCGCGACCCCGCGCGCGCTCGCCGCCGTCCACGCGGCCATGCTCGTCTCCGGCCGCCTCGCCGACGACGCCTTCGCGGCGTCCCGCCTCCTCGCCGCCCACGCCGCGCTCTCCCCTCCGGGAGCCGTGCTCCGCCTCCTCGCCTCCCTCCCCTGCGCCCCAAACTCCTTCATGCTCAACATCACGCTCCGCGCCCTCGCCTCCTCCCCCGACCCGGCCTCCGCCCTCCGCTTCTTCTCCCTCCTCCGCCGCGGCAGCGGCGGCGGCGGCGGCTCGTACTCTCCCGGCAGGCACACCTTCACTTTCCTCCTCAAGGCATCCGCCCGCCTCCCCCTCCGCGCCTCCGAGCAGCTCCACGCGCTCGCCGTCAGGCACGGGCTGGAGCGCGACGCCTACGTCGCCAACGGCCTCGTCCGGGCGTACTCGCTCGCGGGCCTCGTCCCCCTCGCGCGCAGGGTGTTCGACGGATTGCCCGAGCGGAGCGCGGTGGTGTGCACCACCATGGTGTCCGGGTACGCGCAAAACGGGATGCACGAGGACGCCATGCGGTCGTTCGAGGAGATGGTCGGCGACGGGATCGAGCCCCACGGCGCAGCGCTGGCGTCCGTGCTGTCGTCGTGCGCGCGGTCGGGGTCGCGCGGGCTCGAGATGGGGCGGCGCGTGCACGAGCTCATGGAGTCGAGGCGGGTGACGGCGCCCGTGGTGGGGGCCATCCTCGGGACGGCGCTGGTCGACATGTACGCCAAGACCGGCGCCATGGAGGAGGCGACGGCGGTGTTTGACCGGATGCCCGAGCGGCAAACGGCGACGTGGAACGCCCTGATCACCGGGCTGGCGCACCACGGCCACGGCGAGGTCGCCCTTGCTACGTTCCACCGGATGAGGCGGGACGGCGTGCCGCCGAACGGTGCCACGCTCGTCGGCGTCCTGTCGGCCTACGGCTGCACGGGGCGTCTCGACGAGGCCCGCCGCGTGTTCGCGTCCATGGAGAAGGACTTCGCGGTGGCGCCGACCATCCAGCACTACGGCTGCATGGTCGACCTCCTCGGCCGGAGCGGCCTCCTCACGGAAGCCGAGGAGATGATCCGTGGCATGACGACCTGCGACGCCGACACGGTGATCTGGGGAGCCCTGCTGAACGCCTGCAAGAACCACGGCGACATCGACGTCGCCGAGAGGGCGGTGCAGGAGATGCTCAAGCTGGATCCCGGCAACCATGGCGTCTACGTGGTGCTCTCCAACATGTACGCCGAGGCCGGGAGGTGGCAGGACGTGGACAGGCTGAGGAAGGTGATGAAGCGGGCGCGGCTTTCCAAGATCCCCGGCTCCAGCACGGTGGCCGGCGACGACAGCTGA
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| Protein seq | MAAAAAAAVGARGGIRRRPNLSLLADRCATPRALAAVHAAMLVSGRLADDAFAASRLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRGSGGGGGSYSPGRHTFTFLLKASARLPLRASEQLHALAVRHGLERDAYVANGLVRAYSLAGLVPLARRVFDGLPERSAVVCTTMVSGYAQNGMHEDAMRSFEEMVGDGIEPHGAALASVLSSCARSGSRGLEMGRRVHELMESRRVTAPVVGAILGTALVDMYAKTGAMEEATAVFDRMPERQTATWNALITGLAHHGHGEVALATFHRMRRDGVPPNGATLVGVLSAYGCTGRLDEARRVFASMEKDFAVAPTIQHYGCMVDLLGRSGLLTEAEEMIRGMTTCDADTVIWGALLNACKNHGDIDVAERAVQEMLKLDPGNHGVYVVLSNMYAEAGRWQDVDRLRKVMKRARLSKIPGSSTVAGDDS |
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| Function | Pentatricopeptide repeat-containing protein At5g66520 [UniProtKB/Swiss-Prot:Q9FJY7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0483950 | Os11t0483950-00 | Chr11 | 17031951 | 17034202 | - | irgsp1_rep | ||
| CDS seq | ATGGCCGCCGCCGCCGCCGCCGCCGTGGGCGCCCGCGGCGGCATCCGGCGCCGGCCGAACCTGTCCCTCCTGGCCGACCGCTGCGCGACCCCGCGCGCGCTCGCCGCCGTCCACGCGGCCATGCTCGTCTCCGGCCGCCTCGCCGACGACGCCTTCGCGGCGTCCCGCCTCCTCGCCGCCCACGCCGCGCTCTCCCCTCCGGGAGCCGTGCTCCGCCTCCTCGCCTCCCTCCCCTGCGCCCCAAACTCCTTCATGCTCAACATCACGCTCCGCGCCCTCGCCTCCTCCCCCGACCCGGCCTCCGCCCTCCGCTTCTTCTCCCTCCTCCGCCGCGGCAGCGGCGGCGGCGGCGGCTCGTACTCTCCCGGCAGGCACACCTTCACTTTCCTCCTCAAGGCATCCGCCCGCCTCCCCCTCCGCGCCTCCGAGCAGCTCCACGCGCTCGCCGTCAGGCACGGGCTGGAGCGCGACGCCTACGTCGCCAACGGCCTCGTCCGGGCGTACTCGCTCGCGGGCCTCGTCCCCCTCGCGCGCAGGGTGTTCGACGGATTGCCCGAGCGGAGCGCGGTGGTGTGCACCACCATGGTGTCCGGGTACGCGCAAAACGGGATGCACGAGGACGCCATGCGGTCGTTCGAGGAGATGGTCGGCGACGGGATCGAGCCCCACGGCGCAGCGCTGGCGTCCGTGCTGTCGTCGTGCGCGCGGTCGGGGTCGCGCGGGCTCGAGATGGGGCGGCGCGTGCACGAGCTCATGGAGTCGAGGCGGGTGACGGCGCCCGTGGTGGGGGCCATCCTCGGGACGGCGCTGGTCGACATGTACGCCAAGACCGGCGCCATGGAGGAGGCGACGGCGGTGTTTGACCGGATGCCCGAGCGGCAAACGGCGACGTGGAACGCCCTGATCACCGGGCTGGCGCACCACGGCCACGGCGAGGTCGCCCTTGCTACGTTCCACCGGATGAGGCGGGACGGCGTGCCGCCGAACGGTGCCACGCTCGTCGGCGTCCTGTCGGCCTACGGCTGCACGGGGCGTCTCGACGAGGCCCGCCGCGTGTTCGCGTCCATGGAGAAGGACTTCGCGGTGGCGCCGACCATCCAGCACTACGGCTGCATGGTCGACCTCCTCGGCCGGAGCGGCCTCCTCACGGAAGCCGAGGAGATGATCCGTGGCATGACGACCTGCGACGCCGACACGGTGATCTGGGGAGCCCTGCTGAACGCCTGCAAGAACCACGGCGACATCGACGTCGCCGAGAGGGCGGTGCAGGAGATGCTCAAGCTGGATCCCGGCAACCATGGCGTCTACGTGGTGCTCTCCAACATGTACGCCGAGGCCGGGAGGTGGCAGGACGTGGACAGGCTGAGGAAGGTGATGAAGCGGGCGCGGCTTTCCAAGATCCCCGGCTCCAGCACGGTGGCCGGCGACGACAGCTGA
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| Protein seq | MAAAAAAAVGARGGIRRRPNLSLLADRCATPRALAAVHAAMLVSGRLADDAFAASRLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRGSGGGGGSYSPGRHTFTFLLKASARLPLRASEQLHALAVRHGLERDAYVANGLVRAYSLAGLVPLARRVFDGLPERSAVVCTTMVSGYAQNGMHEDAMRSFEEMVGDGIEPHGAALASVLSSCARSGSRGLEMGRRVHELMESRRVTAPVVGAILGTALVDMYAKTGAMEEATAVFDRMPERQTATWNALITGLAHHGHGEVALATFHRMRRDGVPPNGATLVGVLSAYGCTGRLDEARRVFASMEKDFAVAPTIQHYGCMVDLLGRSGLLTEAEEMIRGMTTCDADTVIWGALLNACKNHGDIDVAERAVQEMLKLDPGNHGVYVVLSNMYAEAGRWQDVDRLRKVMKRARLSKIPGSSTVAGDDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0483950 | RBH | 0.113608 | 0.084469 | 0.273956 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29360 | RBH | 0.111255 | 0.0 | 0.052097 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014080 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014040 | RBH | 0.0 | 0.731073 | 0.025854 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014000 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013810 | RBH | 0.0 | 0.018997 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014090 | RBH | 1.345534 | 0.0 | 1.481400 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0262200 | RBH | 0.7715405 | 2.4975015 | 0.7071865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002020 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0274400 | RBH | 0.566938 | 1.1747145 | 2.47925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014170 | RBH | 0.0 | 0.090809 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013860 | RBH | 0.0 | 4.292496 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013710 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014000 | RBH | 0.011694 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014040 | RBH | 0.649923 | 2.570059 | 0.265712 |
