Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os11g0202450 | OGI:11015510 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:5174961-5176147 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TGAAGAATGAGATTCCCCAGAACCGGTGCATGTTGAAGAATGCAACTTAGTGCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATGTTGGGCACCATTTCAAATCCCTTTTCAAAATAAACTGCGCGGAGTGCAAAAAAGAAGATAAACAAAAACCTCAGAGTTCAAGTGGATATAAGCACATTAATATAAATAATGAGATAATACAAACAACACAAAGATGGAAGTGCAAGCATACCGATCCATGTTCACTTATCAGCCCCAACGTCTTAGCTTCAGATAAACCTTCCAAAAGCACACAATTGTTGTCCTTGATACCATAACAAGATTCACAGTTCTCATGACCACAATCCCCAGAGTCAGACCAAATGCAATAGTCTTTAGTCCAGTACAGGACTCTAACAAATGCATCAAGTAGTGATGGCATCGTCTCAAGTACTGGAGTCCTGCCATGGAAGTAATCCAGCTGCAGAGAAACAAGACTCGGGATAGCGATACGTACCCGAGACGTCTCACTGAAATAGGAATCGGCTATGCTCAAACGTTTTGCAGAGCTAGATGAGATCTTGGCACAGTCAAATTTACATGACTCAAACACTAGATGCTCCAATGCTGGACAGCTCGAGAAGTTAAGGAAGCTGTTGTTTAGGCCTATGTTCTTAAGCTGTAGCCTCGTCAAGTGTCGGGAGACAAGTGGCATCTCATCCATCAGAAACGGGCTGTGATAGCATATATCGACGTCGAGCAAGAGGAACCGAACCTTGTGGAGCAAAGCATGCCTGAACCAGTGGTTCACCCGTACTGTGTCATCGAGGCCCTCGTCTCTAAACCAAACGAGCCAACGGAACCTTAGCACGCACGTGTCGAGAGGTGCGCCATCACGGAGTAGCAGCAGACGGTTGAGAAACTCCTTCTGGTCCTTCACGCAGCGCAGATAGATATCGTCTTCGCCAATGCGCAGCCCGGTGGCAGACTTCCAGAGGTGGAGCCATCGCCGGGCTAGCAGGCACGTCTGGACAGCCTCCTGCGCCGGTAGGAAGGAGAGCACGTGGTGGAGCACCTCGTCCGGGAGGGCCCCTATACGGTCGCCGCCAGTCGAGCCAGGCAATTCCTTGGCCTTCTTCCGCTGAGACATTCCGTCGAACAGGTTGCGGGCGTC
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CDS seq | ATGCAACTTAGTGCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATGTTGGGCACCATTTCAAATCCCTTTTCAAAATAAACTGCGCGGAGTGCAAAAAAGAAGATAAACAAAAACCTCAGAGTTCAAGTGGATATAAGCACATTAATATAAATAATGAGATAATACAAACAACACAAAGATGGAAGTGCAAGCATACCGATCCATGTTCACTTATCAGCCCCAACGTCTTAGCTTCAGATAAACCTTCCAAAAGCACACAATTGACTCTAACAAATGCATCAAGTAGTGATGGCATCGTCTCAAGTACTGGAGTCCTGCCATGGAAGTAA |
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Protein seq | MQLSALKSSGTHQYSLSNKVFSLVNVGHHFKSLFKINCAECKKEDKQKPQSSSGYKHININNEIIQTTQRWKCKHTDPCSLISPNVLASDKPSKSTQLTLTNASSSDGIVSSTGVLPWK |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os11g0202450 | Os11t0202450-00 | Chr11 | 5174961 | 5176147 | + | irgsp1_rep | ||
CDS seq | ATGCAACTTAGTGCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATGTTGGGCACCATTTCAAATCCCTTTTCAAAATAAACTGCGCGGAGTGCAAAAAAGAAGATAAACAAAAACCTCAGAGTTCAAGTGGATATAAGCACATTAATATAAATAATGAGATAATACAAACAACACAAAGATGGAAGTGCAAGCATACCGATCCATGTTCACTTATCAGCCCCAACGTCTTAGCTTCAGATAAACCTTCCAAAAGCACACAATTGACTCTAACAAATGCATCAAGTAGTGATGGCATCGTCTCAAGTACTGGAGTCCTGCCATGGAAGTAA
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Protein seq | MQLSALKSSGTHQYSLSNKVFSLVNVGHHFKSLFKINCAECKKEDKQKPQSSSGYKHININNEIIQTTQRWKCKHTDPCSLISPNVLASDKPSKSTQLTLTNASSSDGIVSSTGVLPWK |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0202450 | RBH | 0.222556 | 0.0 | 0.000000 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006820 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006740 | SBH | 0.0 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006710 | SBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006680 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006770 | SBH | 0.0 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006830 | SBH | 0.0 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006800 | SBH | 0.000000 | 0.000000 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006630 | SBH | 0.000000 | 0.000000 | 0.000000 |