Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0179000 | OGI:11012230 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:3920115-3920826 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGTAGCAAGTCGGAGCTGCTTATCTTATTGTAAGCTTGATAAACAATCGATAAATCAAGCATGTTACAACAACAAACGATGTTTAACAAACATAAATGTGCTTATGTATGTCGCTCATCATCTTCTAGCTACGCCTTGACGAAGAGGGTGTACTCGACGATGGTCTCGCCGGACTTGAAGCCGGAGTCGACGGTGCGGGCCTCGGCGTACCCCCTCGCCATGCGGAACTTGCCGGAGCCGCCGACGACGCTCATCTCCCTCACCGGCGACATCACCTCGTTCCGCCCCATGATCGCCAGGCTGCTGCCGTTGTGGTCGCCGGCGGTGAACACGAAGTTCATGTCCATCAGGAGGCCGATCACCCTCTGGTCGGCGAACGTGTACGTCCCCTGCGCGCGCCCCACCACCTCCCCCGCCGCCGCCGCCGCCGGCGAGCTCGTCAGCGGGTCGTCGATGGCCACCACCGCGCCGAAGTAGGTCGACGACGCGTTCGTCGACGCCGCCTGCGCCACCCGGATCGCCGTCGGGTTCGGCCCCGCCACCACGTCGTGCCAGTACACCTTGATCTTTGTCATCCCGGCGCCGCCGCCGCCGCCGTCGTCCATCGCCCACGCCACCGCCGCCACGCACAGTAACAGAAGCAGCTGGAGAGCCGCCTTCGCCATGGCTGCAGCTGGAGCTTGAGCTGATCGAGCAAGCTGAAGGAGGAGCT
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| CDS seq | ATGGCGAAGGCGGCTCTCCAGCTGCTTCTGTTACTGTGCGTGGCGGCGGTGGCGTGGGCGATGGACGACGGCGGCGGCGGCGGCGCCGGGATGACAAAGATCAAGGTGTACTGGCACGACGTGGTGGCGGGGCCGAACCCGACGGCGATCCGGGTGGCGCAGGCGGCGTCGACGAACGCGTCGTCGACCTACTTCGGCGCGGTGGTGGCCATCGACGACCCGCTGACGAGCTCGCCGGCGGCGGCGGCGGCGGGGGAGGTGGTGGGGCGCGCGCAGGGGACGTACACGTTCGCCGACCAGAGGGTGATCGGCCTCCTGATGGACATGAACTTCGTGTTCACCGCCGGCGACCACAACGGCAGCAGCCTGGCGATCATGGGGCGGAACGAGGTGATGTCGCCGGTGAGGGAGATGAGCGTCGTCGGCGGCTCCGGCAAGTTCCGCATGGCGAGGGGGTACGCCGAGGCCCGCACCGTCGACTCCGGCTTCAAGTCCGGCGAGACCATCGTCGAGTACACCCTCTTCGTCAAGGCGTAG
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| Protein seq | MAKAALQLLLLLCVAAVAWAMDDGGGGGAGMTKIKVYWHDVVAGPNPTAIRVAQAASTNASSTYFGAVVAIDDPLTSSPAAAAAGEVVGRAQGTYTFADQRVIGLLMDMNFVFTAGDHNGSSLAIMGRNEVMSPVREMSVVGGSGKFRMARGYAEARTVDSGFKSGETIVEYTLFVKA |
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| Function | Dirigent protein 3 [UniProtKB/Swiss-Prot:Q9FI66] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0179000 | Os11t0179000-01 | Chr11 | 3920115 | 3920826 | - | irgsp1_rep | ||
| CDS seq | ATGGCGAAGGCGGCTCTCCAGCTGCTTCTGTTACTGTGCGTGGCGGCGGTGGCGTGGGCGATGGACGACGGCGGCGGCGGCGGCGCCGGGATGACAAAGATCAAGGTGTACTGGCACGACGTGGTGGCGGGGCCGAACCCGACGGCGATCCGGGTGGCGCAGGCGGCGTCGACGAACGCGTCGTCGACCTACTTCGGCGCGGTGGTGGCCATCGACGACCCGCTGACGAGCTCGCCGGCGGCGGCGGCGGCGGGGGAGGTGGTGGGGCGCGCGCAGGGGACGTACACGTTCGCCGACCAGAGGGTGATCGGCCTCCTGATGGACATGAACTTCGTGTTCACCGCCGGCGACCACAACGGCAGCAGCCTGGCGATCATGGGGCGGAACGAGGTGATGTCGCCGGTGAGGGAGATGAGCGTCGTCGGCGGCTCCGGCAAGTTCCGCATGGCGAGGGGGTACGCCGAGGCCCGCACCGTCGACTCCGGCTTCAAGTCCGGCGAGACCATCGTCGAGTACACCCTCTTCGTCAAGGCGTAG
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| Protein seq | MAKAALQLLLLLCVAAVAWAMDDGGGGGAGMTKIKVYWHDVVAGPNPTAIRVAQAASTNASSTYFGAVVAIDDPLTSSPAAAAAGEVVGRAQGTYTFADQRVIGLLMDMNFVFTAGDHNGSSLAIMGRNEVMSPVREMSVVGGSGKFRMARGYAEARTVDSGFKSGETIVEYTLFVKA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0179000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0174700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005280 | SBH | 0.0 | 52.037365 | 10.403159 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005250 | SBH | 0.021582 | 36.779835 | 0.981911 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005280 | SBH | 0.0 | 96.427231 | 6.738664 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005140 | RBH | 0.000000 | 1.078321 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005060 | SBH | 0.0 | 23.638411 | 3.313388 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0066000 | SBH | 0 | 3.3029605 | 0.013106 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005140 | SBH | 0.113164 | 4.926851 | 1.033366 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0065500 | RBH | 1.7457955 | 0.3632745 | 0.1839045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005090 | RBH | 0.026785 | 0.891118 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005160 | RBH | 0.467697 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005180 | RBH | 0.0 | 89.813347 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005170 | SBH | 0.0 | 0.0 | 0.522610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005160 | SBH | 0.138738 | 36.180645 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005220 | SBH | 0.0 | 5.558372 | 2.946915 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005110 | SBH | 0.0 | 44.844837 | 8.549788 |
