Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0172133 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:3535566-3536200 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCCCCGCATGGGGCTATGGGCGTAGCGGCGGCTGGGACGCCGCTGAAGGCGGAGGAGATGGCCGGCGGGTGTACTGGATGGATCTCCGTCGGCCCGTCGGCGACAGGATGGAACGGCGAGGTGAGGTCCAACCGCCCAAATTTTCTCTTCTTTTTTTACTTTGTCTTCAAATCTATATTGAGAGCACTTACTGTTTCTGCGATTTGCATTCAGTGTCCATCTTGGAGCTACCCTTAGAAATTTTGGGATAAGTTGCTTGATTCATGAGGTTATGCGATTTACAAGAGCATATAATGCAGTTGTTTTCTGTTGTGCATCTGCATCCTAGTCTAAATTAATATAATTGACATGGTTTGCCTTTTTCTTTTTTGAAAGAAAAAGAAGGATAATAGAATTCAGAATAGACATTTGTGTGCACTGTGCAGAATTTGGCAGCAAATTGTTCAGCTGGAATCAATTATTGCAAATGGGGGTCATTCAGCCGCAAAGCCGACTTGTTTGAATGGCCAGATGCAGCGAAAGTCTCTGACAGAGACAAAGAACATGCAAGCAATGAAGTCCACCGAGAACCAAGGACTGTAGTAGAAGTAGCAAAGTCTCTGAAGAAGAAAATGTTAGAACTTAGTCCATGA
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| CDS seq | ATGTCCCCGCATGGGGCTATGGGCGTAGCGGCGGCTGGGACGCCGCTGAAGGCGGAGGAGATGGCCGGCGGGTGTACTGGATGGATCTCCGTCGGCCCGTCGGCGACAGGATGGAACGGCGAGAATTTGGCAGCAAATTGTTCAGCTGGAATCAATTATTGCAAATGGGGGTCATTCAGCCGCAAAGCCGACTTGTTTGAATGGCCAGATGCAGCGAAAGTCTCTGACAGAGACAAAGAACATGCAAGCAATGAAGTCCACCGAGAACCAAGGACTGTAGTAGAAGTAGCAAAGTCTCTGAAGAAGAAAATGTTAGAACTTAGTCCATGA |
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| Protein seq | MSPHGAMGVAAAGTPLKAEEMAGGCTGWISVGPSATGWNGENLAANCSAGINYCKWGSFSRKADLFEWPDAAKVSDRDKEHASNEVHREPRTVVEVAKSLKKKMLELSP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0172133 | Os11t0172133-00 | Chr11 | 3535566 | 3536200 | + | irgsp1_rep | ||
| CDS seq | ATGTCCCCGCATGGGGCTATGGGCGTAGCGGCGGCTGGGACGCCGCTGAAGGCGGAGGAGATGGCCGGCGGGTGTACTGGATGGATCTCCGTCGGCCCGTCGGCGACAGGATGGAACGGCGAGAATTTGGCAGCAAATTGTTCAGCTGGAATCAATTATTGCAAATGGGGGTCATTCAGCCGCAAAGCCGACTTGTTTGAATGGCCAGATGCAGCGAAAGTCTCTGACAGAGACAAAGAACATGCAAGCAATGAAGTCCACCGAGAACCAAGGACTGTAGTAGAAGTAGCAAAGTCTCTGAAGAAGAAAATGTTAGAACTTAGTCCATGA
More
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| Protein seq | MSPHGAMGVAAAGTPLKAEEMAGGCTGWISVGPSATGWNGENLAANCSAGINYCKWGSFSRKADLFEWPDAAKVSDRDKEHASNEVHREPRTVVEVAKSLKKKMLELSP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0172133 | RBH | 0.362566 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07100 | RBH | 0.204818 | 0.114834 | 0.303369 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004870 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004890 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0060500 | SBH | 1.0585345 | 6.957708 | 3.945736 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0061100 | SBH | 1.5741045 | 11.4858855 | 8.5262935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004830 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004750 | RBH | 0.713184 | 0.0 | 0.000000 |
