Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0133200 | OGI:11005340 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:1534948-1535784 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACATATATCCAAGAGCATCCTTCACCCTTCCTAGCTTGCAGTACCCATTAATCAAAACATTAACCATCACCTTCGTCAGCGAGCACCCCATTTCCAACATCCTGGCTTTCACCCTCAGTGCAGCCTCGATGCTCCCCTCCTCAACAAATCCTTGCATCAGGGTGGTAAACGTCGTCTCGTCAGGCGCCACGCCTCTGCTAGACATTTCCTCGAGCATGAGAACTGCAGTCCTGACCTGATGTGCTCGGCATAACGCTTTCATCAGTGTGTTGAATGTGACAACATCAGGCTTGATCCCCCTAGCACCCATCTCCGAGTACACCAACTCAAGCAATTTCATCTCGCTCCCCTCCACAAGAACATTGAGAAGGTGGTTGTACACCACCGTGTCTGCCTGAATGCCAAACAGTGGGTCAAGCTGATTCAGGACCAGATCGACGGCATCGTCGAACAGCTGCTGTCGCGCGTAGCAATCCAGGAAGGAGTGGACTACGCCCAATTTCACCTGGTGCCCCTCCCGCCGCATCTCCGCGACAAGCACCTTCATGAGGTCGAGGGCGCCTGCGGCGCCGAGCTTGCGGATGATCTCCTCGTAGACCTCGGGGCCGGGCGCGAAGTCGTTCCACGCCAGCACCGCGTTGAGCATCCGGAGCACCGTGTCGGGGTCCGGCTGCTCTCGCAGGGCGGTGAGAAGCTGCTCTTGGTCGGCTGCCCGGAGAGGGCCGTGCCGGGCCTCGGCGCGGCGCCACCGAACCCGTAGCGGCAAAGGAGGCCCTACTCTGACATGGCACGGGCACGGCGGCTCCGCCCGAGGTGCTGAGCAAACGCGGTGCAT
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| CDS seq | ATGCACCGCGTTTGCTCAGCACCTCGGGCGGAGCCGCCGTGCCCGTGCCATGTCAGAGTAGGGCCTCCTTTGCCGCTACGGGTTCGGTGGCGCCGCGCCGAGGCCCGGCACGGCCCTCTCCGGGCAGCCGACCAAGAGCAGCTTCTCACCGCCCTGCGAGAGCAGCCGGACCCCGACACGGTGCTCCGGATGCTCAACGCGGTGCTGGCGTGGAACGACTTCGCGCCCGGCCCCGAGGTCTACGAGGAGATCATCCGCAAGCTCGGCGCCGCAGGCGCCCTCGACCTCATGAAGGTGCTTGTCGCGGAGATGCGGCGGGAGGGGCACCAGGTGAAATTGGGCGTAGTCCACTCCTTCCTGGATTGCTACGCGCGACAGCAGCTGTTCGACGATGCCGTCGATCTGGTCCTGAATCAGCTTGACCCACTGTTTGGCATTCAGGCAGACACGGTGGTGTACAACCACCTTCTCAATGTTCTTGTGGAGGGGAGCGAGATGAAATTGCTTGAGTTGGTGTACTCGGAGATGGGTGCTAGGGGGATCAAGCCTGATGTTGTCACATTCAACACACTGATGAAAGCGTTATGCCGAGCACATCAGGTCAGGACTGCAGTTCTCATGCTCGAGGAAATGTCTAGCAGAGGCGTGGCGCCTGACGAGACGACGTTTACCACCCTGATGCAAGGATTTGTTGAGGAGGGGAGCATCGAGGCTGCACTGAGGGTGAAAGCCAGGATGTTGGAAATGGGGTGCTCGCTGACGAAGGTGATGGTTAATGTTTTGATTAATGGGTACTGCAAGCTAGGAAGGGTGAAGGATGCTCTTGGATATATGTAG
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| Protein seq | MHRVCSAPRAEPPCPCHVRVGPPLPLRVRWRRAEARHGPLRAADQEQLLTALREQPDPDTVLRMLNAVLAWNDFAPGPEVYEEIIRKLGAAGALDLMKVLVAEMRREGHQVKLGVVHSFLDCYARQQLFDDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSEMKLLELVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSLTKVMVNVLINGYCKLGRVKDALGYM |
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| Function | Pentatricopeptide repeat-containing protein At3g53700, chloroplastic [UniProtKB/Swiss-Prot:Q9LFF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0133200 | Os11t0133200-00 | Chr11 | 1534948 | 1535784 | - | irgsp1_rep | ||
| CDS seq | ATGCACCGCGTTTGCTCAGCACCTCGGGCGGAGCCGCCGTGCCCGTGCCATGTCAGAGTAGGGCCTCCTTTGCCGCTACGGGTTCGGTGGCGCCGCGCCGAGGCCCGGCACGGCCCTCTCCGGGCAGCCGACCAAGAGCAGCTTCTCACCGCCCTGCGAGAGCAGCCGGACCCCGACACGGTGCTCCGGATGCTCAACGCGGTGCTGGCGTGGAACGACTTCGCGCCCGGCCCCGAGGTCTACGAGGAGATCATCCGCAAGCTCGGCGCCGCAGGCGCCCTCGACCTCATGAAGGTGCTTGTCGCGGAGATGCGGCGGGAGGGGCACCAGGTGAAATTGGGCGTAGTCCACTCCTTCCTGGATTGCTACGCGCGACAGCAGCTGTTCGACGATGCCGTCGATCTGGTCCTGAATCAGCTTGACCCACTGTTTGGCATTCAGGCAGACACGGTGGTGTACAACCACCTTCTCAATGTTCTTGTGGAGGGGAGCGAGATGAAATTGCTTGAGTTGGTGTACTCGGAGATGGGTGCTAGGGGGATCAAGCCTGATGTTGTCACATTCAACACACTGATGAAAGCGTTATGCCGAGCACATCAGGTCAGGACTGCAGTTCTCATGCTCGAGGAAATGTCTAGCAGAGGCGTGGCGCCTGACGAGACGACGTTTACCACCCTGATGCAAGGATTTGTTGAGGAGGGGAGCATCGAGGCTGCACTGAGGGTGAAAGCCAGGATGTTGGAAATGGGGTGCTCGCTGACGAAGGTGATGGTTAATGTTTTGATTAATGGGTACTGCAAGCTAGGAAGGGTGAAGGATGCTCTTGGATATATGTAG
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| Protein seq | MHRVCSAPRAEPPCPCHVRVGPPLPLRVRWRRAEARHGPLRAADQEQLLTALREQPDPDTVLRMLNAVLAWNDFAPGPEVYEEIIRKLGAAGALDLMKVLVAEMRREGHQVKLGVVHSFLDCYARQQLFDDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSEMKLLELVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSLTKVMVNVLINGYCKLGRVKDALGYM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0133200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03850 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0152600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002220 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021990 | SBH | 0.176679 | 0.205330 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0031100 | RBH | 0.0094235 | 0.01148 | 0.3025295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0029900 | RBH | 0 | 0 | 0.736412 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002160 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002140 | RBH | 0.0 | 0.0 | 0.0 |
