Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0109800 | OGI:11001680 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:454476-456860 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGATCGAGCAGCGACGGCGGCATGTTTCCTTGGACTCACCGCCGCCACCTCCTCCAATCGCATTCTCCTCTCCACCTGCTGCATTACTGCACCTCCTCCACCTCCATCTCCAGGGATCCCTTCGCCATCGCCTCCATGGCCTCCTCCTCCTCCTCCTCTTCACACCTCCACGCGCACTCCCTTAAGCTGGGCACGCTCGCTCACACCTTCAACATGAATCACCTCCTCATCTACTACGCTAGGCGGGGCCTTCTCGACTCAGCACTCAAGGTGTTCGACGAAATGCCGCAAAGGAACCTCGTCTCCTGGACAGCCATGGTCTCTGCCTCAACGGGCAATGGCGCGCCCCACCTGGGCTTTCGTTTCTTCGTTTCCATGATCAGGAGCGGCTTCTGCCCCAACGAGTTCTCGCTCGCAACCATGCTCACTGCCTGCCACTCCATGGTGGCCCATTCCTCCAATAAGCTCCTCATCGCCCTTTCGCTCCACGGTGTTGCCGTCAGAGCTGGCCTGGATAGCAATCCTTTTGTGGGGAGCTCTCTGCTGCTCATGTACGCAAAGCATGGCCGCATTGCTGCTGCACAGCGTGCATTCGCACATATCAGGAACAAAGATTTGACGTGCTGGAATGCCATGCTCGAAGGATATGTTTTGAATGGTTTTGGGCATCATGCCATTCGTACGGTGCTCCTGATGCATCATTCTGGGCTTGCACCTGACCGGTACACCTATATTTCTGCTGTTAAGGCTTGTTCAATCAGTGCGCAGTGGGATCTTGGGCGACAGCTTCACTGTCTTGTCATCCACAGCATGCTCGAGTCCAATACCTCGGTCATGAATTCCCTTGTTGATATGTATTTCAGAGCCAGACAGAAGGAAACTGCTGCTTCTGTCTTTCGCAAGATTAGACAAAAAGACACCGTGTCTTGGAATACCATGATTTCAGGTTTTGCGCATGATGAAGACGACAAGGCAGTTTTTGGCTGCTTGATTGACATGTCACGAATCGGATGTAAACCTAATGAGGTTACTTTCTCTGTCTTGTTGAGGCTGAGTGGTGCTAAAGAGAATGAATCATTGGGCCTTCAGATCGTTGCCCTTGCCTACCGTCATGGCTATACTGACAATGTTCTTGTAGCAAATGCAGTAATCAACATGCTATCCAGATGTGGATTGCTCAACCGTGCATATGGCTTCTTCTGTAGTCTCACATCCACAAACATTGTGACATGGAACGAGATGATTGCAGGTTATGGTCTCTTCAGTCACTCTGAAGAAACAATGAAGCTCTTCCGCAGTTTGGTTTGCTTTGGAGAAAGACCTGATGAGTTCACCTACTCAGCTGTTCTGTCTGCCTTCCAGGAAGCTCAAGGTGCAAGGGATCATGAGCAAATCCACGCAACTATTCTGAAACAAGGTTTTGCCTCCTGTCAGTTCGTGTCCACTTCACTGATCAAGGCAAATGTAGCAGCGTTTGGGTCAGTTCAGATTTCACTAAAAATCATCGAGGACGCTGGCAAGATGGAGCTGGTGTCATGGGGAGTCGTTATCTCAGCATTCCTGAAGCATGGCCTGAACGATGAGGTCATTTTCCTTTTCAACTTGTTTAGAGGTGACTCCACCAACAAGCCTGATGAGTTCATCCTGGCAACCGTCCTAAATGCCTGTGCAAATGCTGCATTGATCAGGCACTGCAGATGCATCCATTCGCTTGTTCTCAAGACAGGTCATTCCAAGCACTTCTGCGTAGCTAGCGCTGTTGTTGATGCCTACGCGAAATGTGGTGAGATTACCTCTGCAGAGAGCGCTTTCACCGTTGTTTCATCAGGAACCGACGATGCCATCCTGTACAACACCATGCTGACAGCTTATGCCAACCATGGTTTGATCCACGAAGCTCTCAACCTCTACGAAGAGATGACAAAGGCTAAATTGAGTCCAACACCAGCCACATTCGTTGCCATTCTGTCAGCCTGCAGCCATTTGGGGCTAGTCGAGCAGGGGAAGCTTGTGTTCAGCACCATGCTGTCTGCGTATGGCATGCATCCAGCAAGAGCCAACTACGCCTGCCTGGTTGATCTCCTGGCAAGAAAGGGGCTACTCGACGAGGCGAAGGGTGTGATCGATGCAATGCCGTTCCAACCATGGCCTGCAGTTTGGAGGTCGCTGGTGATCGGTTGCCGGATACATGGGAACAAGCAACTTGGCGTGCTTGCGGCAGAGCAGATCCTGAGAATGGCGCCGAGCAGCGATGGCGCTTATATTTCGCTGTCAAACGTGTATGCTGACGATGGAGAGTGGCAGTCTGCAGAGGAGACCAGGAGGAGGATGGTTCAGAATCACGTTCAGAAGTTGCAAGGGTACAGCAGGATTGAGATGTAG
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| CDS seq | ATGAGATCGAGCAGCGACGGCGGCATGTTTCCTTGGACTCACCGCCGCCACCTCCTCCAATCGCATTCTCCTCTCCACCTGCTGCATTACTGCACCTCCTCCACCTCCATCTCCAGGGATCCCTTCGCCATCGCCTCCATGGCCTCCTCCTCCTCCTCCTCTTCACACCTCCACGCGCACTCCCTTAAGCTGGGCACGCTCGCTCACACCTTCAACATGAATCACCTCCTCATCTACTACGCTAGGCGGGGCCTTCTCGACTCAGCACTCAAGGTGTTCGACGAAATGCCGCAAAGGAACCTCGTCTCCTGGACAGCCATGGTCTCTGCCTCAACGGGCAATGGCGCGCCCCACCTGGGCTTTCGTTTCTTCGTTTCCATGATCAGGAGCGGCTTCTGCCCCAACGAGTTCTCGCTCGCAACCATGCTCACTGCCTGCCACTCCATGGTGGCCCATTCCTCCAATAAGCTCCTCATCGCCCTTTCGCTCCACGGTGTTGCCGTCAGAGCTGGCCTGGATAGCAATCCTTTTGTGGGGAGCTCTCTGCTGCTCATGTACGCAAAGCATGGCCGCATTGCTGCTGCACAGCGTGCATTCGCACATATCAGGAACAAAGATTTGACGTGCTGGAATGCCATGCTCGAAGGATATGTTTTGAATGGTTTTGGGCATCATGCCATTCGTACGGTGCTCCTGATGCATCATTCTGGGCTTGCACCTGACCGGTACACCTATATTTCTGCTGTTAAGGCTTGTTCAATCAGTGCGCAGTGGGATCTTGGGCGACAGCTTCACTGTCTTGTCATCCACAGCATGCTCGAGTCCAATACCTCGGTCATGAATTCCCTTGTTGATATGTATTTCAGAGCCAGACAGAAGGAAACTGCTGCTTCTGTCTTTCGCAAGATTAGACAAAAAGACACCGTGTCTTGGAATACCATGATTTCAGGTTTTGCGCATGATGAAGACGACAAGGCAGTTTTTGGCTGCTTGATTGACATGTCACGAATCGGATGTAAACCTAATGAGGTTACTTTCTCTGTCTTGTTGAGGCTGAGTGGTGCTAAAGAGAATGAATCATTGGGCCTTCAGATCGTTGCCCTTGCCTACCGTCATGGCTATACTGACAATGTTCTTGTAGCAAATGCAGTAATCAACATGCTATCCAGATGTGGATTGCTCAACCGTGCATATGGCTTCTTCTGTAGTCTCACATCCACAAACATTGTGACATGGAACGAGATGATTGCAGGTTATGGTCTCTTCAGTCACTCTGAAGAAACAATGAAGCTCTTCCGCAGTTTGGTTTGCTTTGGAGAAAGACCTGATGAGTTCACCTACTCAGCTGTTCTGTCTGCCTTCCAGGAAGCTCAAGGTGCAAGGGATCATGAGCAAATCCACGCAACTATTCTGAAACAAGGTTTTGCCTCCTGTCAGTTCGTGTCCACTTCACTGATCAAGGCAAATGTAGCAGCGTTTGGGTCAGTTCAGATTTCACTAAAAATCATCGAGGACGCTGGCAAGATGGAGCTGGTGTCATGGGGAGTCGTTATCTCAGCATTCCTGAAGCATGGCCTGAACGATGAGGTCATTTTCCTTTTCAACTTGTTTAGAGGTGACTCCACCAACAAGCCTGATGAGTTCATCCTGGCAACCGTCCTAAATGCCTGTGCAAATGCTGCATTGATCAGGCACTGCAGATGCATCCATTCGCTTGTTCTCAAGACAGGTCATTCCAAGCACTTCTGCGTAGCTAGCGCTGTTGTTGATGCCTACGCGAAATGTGGTGAGATTACCTCTGCAGAGAGCGCTTTCACCGTTGTTTCATCAGGAACCGACGATGCCATCCTGTACAACACCATGCTGACAGCTTATGCCAACCATGGTTTGATCCACGAAGCTCTCAACCTCTACGAAGAGATGACAAAGGCTAAATTGAGTCCAACACCAGCCACATTCGTTGCCATTCTGTCAGCCTGCAGCCATTTGGGGCTAGTCGAGCAGGGGAAGCTTGTGTTCAGCACCATGCTGTCTGCGTATGGCATGCATCCAGCAAGAGCCAACTACGCCTGCCTGGTTGATCTCCTGGCAAGAAAGGGGCTACTCGACGAGGCGAAGGGTGTGATCGATGCAATGCCGTTCCAACCATGGCCTGCAGTTTGGAGGTCGCTGGTGATCGGTTGCCGGATACATGGGAACAAGCAACTTGGCGTGCTTGCGGCAGAGCAGATCCTGAGAATGGCGCCGAGCAGCGATGGCGCTTATATTTCGCTGTCAAACGTGTATGCTGACGATGGAGAGTGGCAGTCTGCAGAGGAGACCAGGAGGAGGATGGTTCAGAATCACGTTCAGAAGTTGCAAGGGTACAGCAGGATTGAGATGTAG
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| Protein seq | MRSSSDGGMFPWTHRRHLLQSHSPLHLLHYCTSSTSISRDPFAIASMASSSSSSSHLHAHSLKLGTLAHTFNMNHLLIYYARRGLLDSALKVFDEMPQRNLVSWTAMVSASTGNGAPHLGFRFFVSMIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVLNGFGHHAIRTVLLMHHSGLAPDRYTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMISGFAHDEDDKAVFGCLIDMSRIGCKPNEVTFSVLLRLSGAKENESLGLQIVALAYRHGYTDNVLVANAVINMLSRCGLLNRAYGFFCSLTSTNIVTWNEMIAGYGLFSHSEETMKLFRSLVCFGERPDEFTYSAVLSAFQEAQGARDHEQIHATILKQGFASCQFVSTSLIKANVAAFGSVQISLKIIEDAGKMELVSWGVVISAFLKHGLNDEVIFLFNLFRGDSTNKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSKHFCVASAVVDAYAKCGEITSAESAFTVVSSGTDDAILYNTMLTAYANHGLIHEALNLYEEMTKAKLSPTPATFVAILSACSHLGLVEQGKLVFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWRSLVIGCRIHGNKQLGVLAAEQILRMAPSSDGAYISLSNVYADDGEWQSAEETRRRMVQNHVQKLQGYSRIEM |
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| Function | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial [UniProtKB/Swiss-Prot:Q9SS83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0109800 | Os11t0109800-00 | Chr11 | 454476 | 456860 | + | irgsp1_rep | ||
| CDS seq | ATGAGATCGAGCAGCGACGGCGGCATGTTTCCTTGGACTCACCGCCGCCACCTCCTCCAATCGCATTCTCCTCTCCACCTGCTGCATTACTGCACCTCCTCCACCTCCATCTCCAGGGATCCCTTCGCCATCGCCTCCATGGCCTCCTCCTCCTCCTCCTCTTCACACCTCCACGCGCACTCCCTTAAGCTGGGCACGCTCGCTCACACCTTCAACATGAATCACCTCCTCATCTACTACGCTAGGCGGGGCCTTCTCGACTCAGCACTCAAGGTGTTCGACGAAATGCCGCAAAGGAACCTCGTCTCCTGGACAGCCATGGTCTCTGCCTCAACGGGCAATGGCGCGCCCCACCTGGGCTTTCGTTTCTTCGTTTCCATGATCAGGAGCGGCTTCTGCCCCAACGAGTTCTCGCTCGCAACCATGCTCACTGCCTGCCACTCCATGGTGGCCCATTCCTCCAATAAGCTCCTCATCGCCCTTTCGCTCCACGGTGTTGCCGTCAGAGCTGGCCTGGATAGCAATCCTTTTGTGGGGAGCTCTCTGCTGCTCATGTACGCAAAGCATGGCCGCATTGCTGCTGCACAGCGTGCATTCGCACATATCAGGAACAAAGATTTGACGTGCTGGAATGCCATGCTCGAAGGATATGTTTTGAATGGTTTTGGGCATCATGCCATTCGTACGGTGCTCCTGATGCATCATTCTGGGCTTGCACCTGACCGGTACACCTATATTTCTGCTGTTAAGGCTTGTTCAATCAGTGCGCAGTGGGATCTTGGGCGACAGCTTCACTGTCTTGTCATCCACAGCATGCTCGAGTCCAATACCTCGGTCATGAATTCCCTTGTTGATATGTATTTCAGAGCCAGACAGAAGGAAACTGCTGCTTCTGTCTTTCGCAAGATTAGACAAAAAGACACCGTGTCTTGGAATACCATGATTTCAGGTTTTGCGCATGATGAAGACGACAAGGCAGTTTTTGGCTGCTTGATTGACATGTCACGAATCGGATGTAAACCTAATGAGGTTACTTTCTCTGTCTTGTTGAGGCTGAGTGGTGCTAAAGAGAATGAATCATTGGGCCTTCAGATCGTTGCCCTTGCCTACCGTCATGGCTATACTGACAATGTTCTTGTAGCAAATGCAGTAATCAACATGCTATCCAGATGTGGATTGCTCAACCGTGCATATGGCTTCTTCTGTAGTCTCACATCCACAAACATTGTGACATGGAACGAGATGATTGCAGGTTATGGTCTCTTCAGTCACTCTGAAGAAACAATGAAGCTCTTCCGCAGTTTGGTTTGCTTTGGAGAAAGACCTGATGAGTTCACCTACTCAGCTGTTCTGTCTGCCTTCCAGGAAGCTCAAGGTGCAAGGGATCATGAGCAAATCCACGCAACTATTCTGAAACAAGGTTTTGCCTCCTGTCAGTTCGTGTCCACTTCACTGATCAAGGCAAATGTAGCAGCGTTTGGGTCAGTTCAGATTTCACTAAAAATCATCGAGGACGCTGGCAAGATGGAGCTGGTGTCATGGGGAGTCGTTATCTCAGCATTCCTGAAGCATGGCCTGAACGATGAGGTCATTTTCCTTTTCAACTTGTTTAGAGGTGACTCCACCAACAAGCCTGATGAGTTCATCCTGGCAACCGTCCTAAATGCCTGTGCAAATGCTGCATTGATCAGGCACTGCAGATGCATCCATTCGCTTGTTCTCAAGACAGGTCATTCCAAGCACTTCTGCGTAGCTAGCGCTGTTGTTGATGCCTACGCGAAATGTGGTGAGATTACCTCTGCAGAGAGCGCTTTCACCGTTGTTTCATCAGGAACCGACGATGCCATCCTGTACAACACCATGCTGACAGCTTATGCCAACCATGGTTTGATCCACGAAGCTCTCAACCTCTACGAAGAGATGACAAAGGCTAAATTGAGTCCAACACCAGCCACATTCGTTGCCATTCTGTCAGCCTGCAGCCATTTGGGGCTAGTCGAGCAGGGGAAGCTTGTGTTCAGCACCATGCTGTCTGCGTATGGCATGCATCCAGCAAGAGCCAACTACGCCTGCCTGGTTGATCTCCTGGCAAGAAAGGGGCTACTCGACGAGGCGAAGGGTGTGATCGATGCAATGCCGTTCCAACCATGGCCTGCAGTTTGGAGGTCGCTGGTGATCGGTTGCCGGATACATGGGAACAAGCAACTTGGCGTGCTTGCGGCAGAGCAGATCCTGAGAATGGCGCCGAGCAGCGATGGCGCTTATATTTCGCTGTCAAACGTGTATGCTGACGATGGAGAGTGGCAGTCTGCAGAGGAGACCAGGAGGAGGATGGTTCAGAATCACGTTCAGAAGTTGCAAGGGTACAGCAGGATTGAGATGTAG
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| Protein seq | MRSSSDGGMFPWTHRRHLLQSHSPLHLLHYCTSSTSISRDPFAIASMASSSSSSSHLHAHSLKLGTLAHTFNMNHLLIYYARRGLLDSALKVFDEMPQRNLVSWTAMVSASTGNGAPHLGFRFFVSMIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVLNGFGHHAIRTVLLMHHSGLAPDRYTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMISGFAHDEDDKAVFGCLIDMSRIGCKPNEVTFSVLLRLSGAKENESLGLQIVALAYRHGYTDNVLVANAVINMLSRCGLLNRAYGFFCSLTSTNIVTWNEMIAGYGLFSHSEETMKLFRSLVCFGERPDEFTYSAVLSAFQEAQGARDHEQIHATILKQGFASCQFVSTSLIKANVAAFGSVQISLKIIEDAGKMELVSWGVVISAFLKHGLNDEVIFLFNLFRGDSTNKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSKHFCVASAVVDAYAKCGEITSAESAFTVVSSGTDDAILYNTMLTAYANHGLIHEALNLYEEMTKAKLSPTPATFVAILSACSHLGLVEQGKLVFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWRSLVIGCRIHGNKQLGVLAAEQILRMAPSSDGAYISLSNVYADDGEWQSAEETRRRMVQNHVQKLQGYSRIEM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0109800 | RBH | 0.028473 | 0.169288 | 0.500390 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01860 | RBH | 0.041036 | 0.069072 | 0.126010 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000680 | RBH | 0.0 | 0.0 | 0.246198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000710 | RBH | 0.0 | 0.0 | 0.299376 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000700 | RBH | 0.0 | 0.0 | 0.256175 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000700 | RBH | 0.0 | 1.340487 | 0.284887 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0008700 | RBH | 0.8472145 | 1.246643 | 3.825055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000690 | RBH | 0.0 | 0.062266 | 0.143531 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0010000 | RBH | 1.061211 | 1.073694 | 4.1475675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000570 | RBH | 0.019168 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000700 | RBH | 0.454219 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000710 | RBH | 0.071639 | 0.0 | 0.138651 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000720 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000710 | RBH | 0.060863 | 0.0 | 0.137750 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000680 | RBH | 0.0 | 0.0 | 0.0 |
