Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0109600 | OGI:11001620 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:445528-447931 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTCACAATAATTACCACTGTTGAGAAGTCGAAAACATATATATAGCAGTAGAACAAAGAGAATGAATGAAAATAAGTACAACATCCAAAAGAAGCATCAGAAGGATCAGACAATTACTGGTGCAGATTGTCTGACGGGGAAGAAATAGCTTATTCTACATGTGTGTGTCTTGGTTGGAAGTGAACCAATCACTTGAAGAGATATATATATATATATATTCCTTTCTGTTTAAATAATTGCACAAATCATGAAGCACTTGAAGGGATATTTAACTGCAACTGCAATCCATCCTTTATTTGTGCTTTAAAAGTTGTGCATTTCACAAGAAGTGAAGCATAGAAGCGCCTCCAAACACAATATCATCTGGTTTATACTCTTCCATCATCATCTGCTTTATACTCTTCTATCCACCAATCACAGCTCTCAACAAATTGTTGTCTACTTTCTAGTTCTACGGTTCTACCAATAGTCATTGCAGGAGCAAGAACCATCTCTAAAACAATGAAATCGATTGTTATCTCGGACAATGATCTCCCGATGAGTTATCCTCGATACGAGTTTAATTGCAGTGTGACAGTCACTGCAAACTCTGAGGTTCTTGGTGACCCTAATGGTCTCCCCTGGTCCAGTGATGAGAAGGTTAAATGCAATTGCTAGTTTCTCACTATGATGCACTAGTGTGTGCTCCTTCTCTTCATCTTCAACATCAAACATCACCACTTCTGTTGTTGGTTCATAACCCATGGTTTTCATTTCCAATCCTAATTCGTCGAGCTTTTTGTAAATCTGATCTGAAAGAGGATGCGACTTGTCTCCGACACGGAATTCATGGACCTTACCTTCAAACTCAACCCAGCTGCATGCAGGAACCTTCTCGACCCCTTTTGCTTTCATGTCCAATCTAAGCTTCGCTGCATCCTCCCATCTGCCTCTGTTAGAGTATATGTTGGAGAGCATTACATAGTTCCCAGAATTCCAGGGCTCCAGTAGAATGAGCTGCTTCAAAACATGTTCAGCAAGCTCCGTGTTTCGGTGAATCTTGCAGCCACCAAGAAGTGCACCCAATATAACAGCATTTGCTGGCATTGGCATGTCATCAACAAGTTGATGAGCCTCCTGCAACAACCCAGCGCGACTGAGCAGATCGACCATACAACCGTAATGCTCAATCCTAGGGCTGATGTGGTATAACTTAGTCATGTTATGGAAATACCGTCGCCCATCTTGAATGAGGCCAGTGTGTGTACAGCTGCAGAGCAAGCCAATGAAAGTATTGTCATTCAATTTCACGCCAGACTTCTCCATCTGACCAACAAGGGCAAATGCAATCTTTTCATGGCCAGTCATGCCAAGCCCCAAGATCATGGCATTCCAAACAATAATGTCCTTCTTCCTCATTTGCTGGAACACCACCCATGCCTCGACCGTGCTCCCACACTTGGCGTACATATCAATCAATGCAGTCCCTAGGACTGGATTGTCAAGAAACTCATCCCAGTCCACCATCCTGATTGCCTGCCGTCCCAGATCCAATGCACCCAACCTTGTGCAGGCTGATAGCGCCCCAGCTACTGCATAGCAATCTGGCTTCATTCCCTCTGCCTGCATTGCAAGGAAAAGGTCCAGAGCCTCTCGTGGGTGGCCGTTGGAAGCATATCCCCCAACCATGGCGCCCCAGGCCACTGCATCCTTGTGCCGCATCTTGTCAAACACCTCCCTTGCCTTTGCCATCTCCCCACACTTGACATACAAATCTACCGCCGCAGTGGCCACGAACACGCTCTGTGCAACGCCCTCCTGCTCGGCAGCCCTCCAAACAGTCTCCCCAGTTGCCAAATCCGCAATCCGAGCACACGCAGTCAGGACACGCACGGCCGTGAAGCTGTCCGGTCGCATACCATTCGCAAAAGCATTCCTTGCGACATGGACGGCTTCCCTGAGGTCCCCAGCATCCATGTAGGCAGTGATGAGAGCGGTCCAGGGGACGGTGCTGGGGTGTGGCATTTCGTCGAACACCCTCTGGGCTCGATGTAGGAGGCCGCATTTTGCGTATAGGCTGAGGAGGGAGGTGAGGACGTGGGGGTTGGTGTGGGAGGGAAGCTTGAGGGAGCGCGCGTGGAGCTGCTCGCCCGCGCGGAGAGGGTGCGGAAGGCGGGAGGCCGACTTGAGGGCGATGGGGATGGTGAGGTGGGAGGGGTTGGGGAGGAGGCAGTGGACGCGGAGCGCGTGGAGGTGAAGGGCGGAGGAGGTGAGGGCGCGGAGGAGGAGCGAGGAGAGGCCAGCGAGGAGGTCGAGGCGGAGGAGGCGGGCGTGGAGGAGCTTGACGGTGAGCGGCGGGAGGCGGTTGCTAGGGGCGACGCCGGCGAGGAGTAGCCGCCTGATGGCATCGCCAGACATAAATAA
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| CDS seq | ATGTCTGGCGATGCCATCAGGCGGCTACTCCTCGCCGGCGTCGCCCCTAGCAACCGCCTCCCGCCGCTCACCGTCAAGCTCCTCCACGCCCGCCTCCTCCGCCTCGACCTCCTCGCTGGCCTCTCCTCGCTCCTCCTCCGCGCCCTCACCTCCTCCGCCCTTCACCTCCACGCGCTCCGCGTCCACTGCCTCCTCCCCAACCCCTCCCACCTCACCATCCCCATCGCCCTCAAGTCGGCCTCCCGCCTTCCGCACCCTCTCCGCGCGGGCGAGCAGCTCCACGCGCGCTCCCTCAAGCTTCCCTCCCACACCAACCCCCACGTCCTCACCTCCCTCCTCAGCCTATACGCAAAATGCGGCCTCCTACATCGAGCCCAGAGGGTGTTCGACGAAATGCCACACCCCAGCACCGTCCCCTGGACCGCTCTCATCACTGCCTACATGGATGCTGGGGACCTCAGGGAAGCCGTCCATGTCGCAAGGAATGCTTTTGCGAATGGTATGCGACCGGACAGCTTCACGGCCGTGCGTGTCCTGACTGCGTGTGCTCGGATTGCGGATTTGGCAACTGGGGAGACTGTTTGGAGGGCTGCCGAGCAGGAGGGCGTTGCACAGAGCGTGTTCGTGGCCACTGCGGCGGTAGATTTGTATGTCAAGTGTGGGGAGATGGCAAAGGCAAGGGAGGTGTTTGACAAGATGCGGCACAAGGATGCAGTGGCCTGGGGCGCCATGGTTGGGGGATATGCTTCCAACGGCCACCCACGAGAGGCTCTGGACCTTTTCCTTGCAATGCAGGCAGAGGGAATGAAGCCAGATTGCTATGCAGTAGCTGGGGCGCTATCAGCCTGCACAAGGTTGGGTGCATTGGATCTGGGACGGCAGGCAATCAGGATGGTGGACTGGGATGAGTTTCTTGACAATCCAGTCCTAGGGACTGCATTGATTGATATGTACGCCAAGTGTGGGAGCACGGTCGAGGCATGGGTGGTGTTCCAGCAAATGAGGAAGAAGGACATTATTGTTTGGAATGCCATGATCTTGGGGCTTGGCATGACTGGCCATGAAAAGATTGCATTTGCCCTTGTTGGTCAGATGGAGAAGTCTGGCGTGAAATTGAATGACAATACTTTCATTGGCTTGCTCTGCAGCTGTACACACACTGGCCTCATTCAAGATGGGCGACGGTATTTCCATAACATGACTAAGTTATACCACATCAGCCCTAGGATTGAGCATTACGGTTGTATGGTCGATCTGCTCAGTCGCGCTGGGTTGTTGCAGGAGGCTCATCAACTTGTTGATGACATGCCAATGCCAGCAAATGCTGTTATATTGGGTGCACTTCTTGGTGGCTGCAAGATTCACCGAAACACGGAGCTTGCTGAACATGTTTTGAAGCAGCTCATTCTACTGGAGCCCTGGAATTCTGGGAACTATGTAATGCTCTCCAACATATACTCTAACAGAGGCAGATGGGAGGATGCAGCGAAGCTTAGATTGGACATGAAAGCAAAAGGGGTCGAGAAGGTTCCTGCATGCAGCTGGGTTGAGTTTGAAGGTAAGGTCCATGAATTCCGTGTCGGAGACAAGTCGCATCCTCTTTCAGATCAGATTTACAAAAAGCTCGACGAATTAGGATTGGAAATGAAAACCATGGGTTATGAACCAACAACAGAAGTGGTGATGTTTGATGTTGAAGATGAAGAGAAGGAGCACACACTAGTGCATCATAGTGAGAAACTAGCAATTGCATTTAACCTTCTCATCACTGGACCAGGGGAGACCATTAGGGTCACCAAGAACCTCAGAGTTTGCAGTGACTGTCACACTGCAATTAAACTCGTATCGAGGATAACTCATCGGGAGATCATTGTCCGAGATAACAATCGATTTCATTGTTTTAGAGATGGTTCTTGCTCCTGCAATGACTATTGGTAG
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| Protein seq | MSGDAIRRLLLAGVAPSNRLPPLTVKLLHARLLRLDLLAGLSSLLLRALTSSALHLHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW |
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| Function | Putative pentatricopeptide repeat-containing protein At3g08820 [UniProtKB/Swiss-Prot:Q9SR82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0109600 | Os11t0109600-00 | Chr11 | 445528 | 447931 | - | irgsp1_rep | ||
| CDS seq | ATGTCTGGCGATGCCATCAGGCGGCTACTCCTCGCCGGCGTCGCCCCTAGCAACCGCCTCCCGCCGCTCACCGTCAAGCTCCTCCACGCCCGCCTCCTCCGCCTCGACCTCCTCGCTGGCCTCTCCTCGCTCCTCCTCCGCGCCCTCACCTCCTCCGCCCTTCACCTCCACGCGCTCCGCGTCCACTGCCTCCTCCCCAACCCCTCCCACCTCACCATCCCCATCGCCCTCAAGTCGGCCTCCCGCCTTCCGCACCCTCTCCGCGCGGGCGAGCAGCTCCACGCGCGCTCCCTCAAGCTTCCCTCCCACACCAACCCCCACGTCCTCACCTCCCTCCTCAGCCTATACGCAAAATGCGGCCTCCTACATCGAGCCCAGAGGGTGTTCGACGAAATGCCACACCCCAGCACCGTCCCCTGGACCGCTCTCATCACTGCCTACATGGATGCTGGGGACCTCAGGGAAGCCGTCCATGTCGCAAGGAATGCTTTTGCGAATGGTATGCGACCGGACAGCTTCACGGCCGTGCGTGTCCTGACTGCGTGTGCTCGGATTGCGGATTTGGCAACTGGGGAGACTGTTTGGAGGGCTGCCGAGCAGGAGGGCGTTGCACAGAGCGTGTTCGTGGCCACTGCGGCGGTAGATTTGTATGTCAAGTGTGGGGAGATGGCAAAGGCAAGGGAGGTGTTTGACAAGATGCGGCACAAGGATGCAGTGGCCTGGGGCGCCATGGTTGGGGGATATGCTTCCAACGGCCACCCACGAGAGGCTCTGGACCTTTTCCTTGCAATGCAGGCAGAGGGAATGAAGCCAGATTGCTATGCAGTAGCTGGGGCGCTATCAGCCTGCACAAGGTTGGGTGCATTGGATCTGGGACGGCAGGCAATCAGGATGGTGGACTGGGATGAGTTTCTTGACAATCCAGTCCTAGGGACTGCATTGATTGATATGTACGCCAAGTGTGGGAGCACGGTCGAGGCATGGGTGGTGTTCCAGCAAATGAGGAAGAAGGACATTATTGTTTGGAATGCCATGATCTTGGGGCTTGGCATGACTGGCCATGAAAAGATTGCATTTGCCCTTGTTGGTCAGATGGAGAAGTCTGGCGTGAAATTGAATGACAATACTTTCATTGGCTTGCTCTGCAGCTGTACACACACTGGCCTCATTCAAGATGGGCGACGGTATTTCCATAACATGACTAAGTTATACCACATCAGCCCTAGGATTGAGCATTACGGTTGTATGGTCGATCTGCTCAGTCGCGCTGGGTTGTTGCAGGAGGCTCATCAACTTGTTGATGACATGCCAATGCCAGCAAATGCTGTTATATTGGGTGCACTTCTTGGTGGCTGCAAGATTCACCGAAACACGGAGCTTGCTGAACATGTTTTGAAGCAGCTCATTCTACTGGAGCCCTGGAATTCTGGGAACTATGTAATGCTCTCCAACATATACTCTAACAGAGGCAGATGGGAGGATGCAGCGAAGCTTAGATTGGACATGAAAGCAAAAGGGGTCGAGAAGGTTCCTGCATGCAGCTGGGTTGAGTTTGAAGGTAAGGTCCATGAATTCCGTGTCGGAGACAAGTCGCATCCTCTTTCAGATCAGATTTACAAAAAGCTCGACGAATTAGGATTGGAAATGAAAACCATGGGTTATGAACCAACAACAGAAGTGGTGATGTTTGATGTTGAAGATGAAGAGAAGGAGCACACACTAGTGCATCATAGTGAGAAACTAGCAATTGCATTTAACCTTCTCATCACTGGACCAGGGGAGACCATTAGGGTCACCAAGAACCTCAGAGTTTGCAGTGACTGTCACACTGCAATTAAACTCGTATCGAGGATAACTCATCGGGAGATCATTGTCCGAGATAACAATCGATTTCATTGTTTTAGAGATGGTTCTTGCTCCTGCAATGACTATTGGTAG
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| Protein seq | MSGDAIRRLLLAGVAPSNRLPPLTVKLLHARLLRLDLLAGLSSLLLRALTSSALHLHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0109600 | RBH | 0.800143 | 0.143449 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01836 | RBH | 0.487897 | 0.087490 | 0.029608 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000670 | SBH | 0.0 | 0.000000 | 0.184960 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000700 | SBH | 0.0 | 0.213842 | 0.158680 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000680 | SBH | 0.000000 | 1.286606 | 0.526188 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000690 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000690 | SBH | 0.000000 | 0.000000 | 1.284173 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0008400 | RBH | 0.65029 | 1.4106965 | 0.677918 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000680 | SBH | 0.019240 | 0.061294 | 0.022284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0009700 | RBH | 0.7845195 | 0.945891 | 3.566698 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000560 | SBH | 0.016473 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000690 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000690 | SBH | 0.0 | 1.255573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000700 | SBH | 0.000000 | 0.0 | 0.042941 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000710 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000690 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000750 | SBH | 0.0 | 0.0 | 0.654096 |
