Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0571900 | OGI:01011440 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:22677765-22679745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTCCCTGAACTGATTGAACCCAACAAATACACCAAAAAGCCTACTTTCCTTGTTTGTTCCAAAAGTAGTATCAAAACTAACAACATCACCAAAATATGCATAGTCAGTGAGCATTTTAGCATCAACCCAAAATATGTTTGCTATTTGTTCCTCCTGATCCATCTGCAATGCATATTGGAACGACGGGTTCTCTGCAATTTTATCTTGAAAATACATGAGCATGCTTCCTGCTTGACCATATGCCATCTCTCGTTGGCGCTTGCCCCGTAAATAATTCTTGTGCTCACGAAGAGTGTATCTGAGATTAAGTGAGCCACCAACTTGGATACTAGCCAACTCATGTGCTGCTTTGGGCCCAATTCCCGCATCGTCGGCTGTCTCAATTTCAAAACCTTGTAACTCTGAAATTTTTCTTTGAGACACCATCAAGTGCGAGGTTTCTGGCAACTGAAGGATGTGATTGTGTTCCAAAACAAGATCAGCCACTTTATAATTCCCCTTCTCTAGATCTAGTACAACACCCATGCGAACTTGACAATCGGTTCTAGTTTCAGCTGTAGGACACTTTGTTAGATGATCCCTTTTATCTTCCTTTCTATGGCCTTCATTTGCACAAACATATCTGCAGGACCTAACCTTCCCATCTGATTTTCTTTTGTTTGTGTACCGTTTTCTCACCTCAAACCCTTTCTGACCTCCATAGCTATTCCAAAACATCCAAGCCTCATCTGTACTGCTGAATTCCATGCCAACTTGAGGTAACAAACTAGGGGAAAACCCATCCCTACAGCAAACAAAATATTTAATTTGATGGTGGTATGATAAGCAACTAAAATATATCTGTACGCATTGGGAGTAGGGATGAAAACGGTCGGAAACGATCGGAAAACAGCCTCAACCATTTCCGTAACCATATTTTTCTCGGAAACGAAATCGGAAACGGTAAAGTCGGAAACGAAAACGATATCGGAAATATCGGAAAATCGGAAACGGAACAATATGGACGGAAACATGTCGGTACAGATCGGAAACCGGTAACAAATACGGAAACATTAAACTATAAAAACATATATTTAACTTTACATAAGTATGTTATATATATATACATAAATTCAAGCTTATACTATATAAATTATAAATTAACTTCATTTTAGCCATGTACAAAAGTTAGAGATTTTATTGAAGAGTCATTCAATCTATAAGCTGTGGGTCAAGTATAGACATGTCCTATAATATCGACATATTTAGAATACGGTAATTACCATATTATAAGAAACGGTAATTTCCGCGAGAATACGGTAAATACGGAAACGATCGGTATAACAGCAAAACCATTTCCGTTTTCATTTCCATATTTTTTACCATTTCCATTTTTGTTTCGGTCGATTACCATTTCCATATGGCTCGGCCGGTAGAAAGTCAAAAACGAACGCCGGTCGGCCGGTAATTACCGTTACCGTTTTCACCCCTAATTGGGAGAAAGAAACAAGCATGGGTTACACACCTCTTTTCTTCCATCTCATATATCCTGCTTCTATTTTTTGATGAATCGCAAGTTGATGTTTCGTTAAACTATTTCCACACAGGCTAACATAGGAGAGGATGGCAAACAAATTAGAAGAAGATTGTTGCAATCTAAACACACACACATGAAGACTGTGCAAACCTGCGAGCATGATCTTGTTTTCTCTGTTTTTACTGCAGCTGATCGCCTCACCCTCGTGCTCCACGGAGAAGCCGATCGCCTCACCCTCTTGCCGACGCCTCACGTTCACTCGCGGGAAAAGCAGATGGGATTCGCGCCAAAAAGGAAAAGACGGCGCCAAAAAGGGGAGCAACGGGCTGACGATGGTGTGCTTGTTGGGCCTAGGCCCAGATAACAAAGGAGCGAAGCAGCCGGACGTGCAGCTCCACGCAAAGGCGTTCGATCGTGAGCTGACGGATGGATTCGCGTGACTGCTCTCTACCATCATTCCAGGT
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| CDS seq | ATGGAAGAAAAGAGGGATGGGTTTTCCCCTAGTTTGTTACCTCAAGTTGGCATGGAATTCAGCAGTACAGATGAGGCTTGGATGTTTTGGAATAGCTATGGAGGTCAGAAAGGGTTTGAGGTGAGAAAACGGTACACAAACAAAAGAAAATCAGATGGGAAGGTTAGGTCCTGCAGATATGTTTGTGCAAATGAAGGCCATAGAAAGGAAGATAAAAGGGATCATCTAACAAAGTGTCCTACAGCTGAAACTAGAACCGATTGTCAAGTTCGCATGGGTGTTGTACTAGATCTAGAGAAGGGGAATTATAAAGTGGCTGATCTTGTTTTGGAACACAATCACATCCTTCAGTTGCCAGAAACCTCGCACTTGATGGTGTCTCAAAGAAAAATTTCAGAGTTACAAGGTTTTGAAATTGAGACAGCCGACGATGCGGGAATTGGGCCCAAAGCAGCACATGAGTTGGCTAGTATCCAAGTTGGTGGCTCACTTAATCTCAGATACACTCTTCGTGAGCACAAGAATTATTTACGGGGCAAGCGCCAACGAGAGATGGCATATGGTCAAGCAGGAAGCATGCTCATGTATTTTCAAGATAAAATTGCAGAGAACCCGTCGTTCCAATATGCATTGCAGATGGATCAGGAGGAACAAATAGCAAACATATTTTGGGTTGATGCTAAAATGCTCACTGACTATGCATATTTTGGTGATGTTGTTAGTTTTGATACTACTTTTGGAACAAACAAGGAAAGTAGGCTTTTTGGTGTATTTGTTGGGTTCAATCAGTTCAGGGAAA
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| Protein seq | MEEKRDGFSPSLLPQVGMEFSSTDEAWMFWNSYGGQKGFEVRKRYTNKRKSDGKVRSCRYVCANEGHRKEDKRDHLTKCPTAETRTDCQVRMGVVLDLEKGNYKVADLVLEHNHILQLPETSHLMVSQRKISELQGFEIETADDAGIGPKAAHELASIQVGGSLNLRYTLREHKNYLRGKRQREMAYGQAGSMLMYFQDKIAENPSFQYALQMDQEEQIANIFWVDAKMLTDYAYFGDVVSFDTTFGTNKESRLFGVFVGFNQFRE |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0571900 | Os10t0571900-00 | Chr10 | 22677765 | 22679745 | - | irgsp1_rep | ||
| CDS seq | ATGGAAGAAAAGAGGGATGGGTTTTCCCCTAGTTTGTTACCTCAAGTTGGCATGGAATTCAGCAGTACAGATGAGGCTTGGATGTTTTGGAATAGCTATGGAGGTCAGAAAGGGTTTGAGGTGAGAAAACGGTACACAAACAAAAGAAAATCAGATGGGAAGGTTAGGTCCTGCAGATATGTTTGTGCAAATGAAGGCCATAGAAAGGAAGATAAAAGGGATCATCTAACAAAGTGTCCTACAGCTGAAACTAGAACCGATTGTCAAGTTCGCATGGGTGTTGTACTAGATCTAGAGAAGGGGAATTATAAAGTGGCTGATCTTGTTTTGGAACACAATCACATCCTTCAGTTGCCAGAAACCTCGCACTTGATGGTGTCTCAAAGAAAAATTTCAGAGTTACAAGGTTTTGAAATTGAGACAGCCGACGATGCGGGAATTGGGCCCAAAGCAGCACATGAGTTGGCTAGTATCCAAGTTGGTGGCTCACTTAATCTCAGATACACTCTTCGTGAGCACAAGAATTATTTACGGGGCAAGCGCCAACGAGAGATGGCATATGGTCAAGCAGGAAGCATGCTCATGTATTTTCAAGATAAAATTGCAGAGAACCCGTCGTTCCAATATGCATTGCAGATGGATCAGGAGGAACAAATAGCAAACATATTTTGGGTTGATGCTAAAATGCTCACTGACTATGCATATTTTGGTGATGTTGTTAGTTTTGATACTACTTTTGGAACAAACAAGGAAAGTAGGCTTTTTGGTGTATTTGTTGGGTTCAATCAGTTCAGGGAAA
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| Protein seq | MEEKRDGFSPSLLPQVGMEFSSTDEAWMFWNSYGGQKGFEVRKRYTNKRKSDGKVRSCRYVCANEGHRKEDKRDHLTKCPTAETRTDCQVRMGVVLDLEKGNYKVADLVLEHNHILQLPETSHLMVSQRKISELQGFEIETADDAGIGPKAAHELASIQVGGSLNLRYTLREHKNYLRGKRQREMAYGQAGSMLMYFQDKIAENPSFQYALQMDQEEQIANIFWVDAKMLTDYAYFGDVVSFDTTFGTNKESRLFGVFVGFNQFRE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0571900 | RBH | 0.0 | 0.0 | 0.441314 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g42160 | RBH | 0.0 | 0.0 | 0.092288 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005670 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009540 | RBH | 0.000000 | 0.114125 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0373700 | RBH | 0 | 0.037202 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005870 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0400600 | RBH | 2.2096345 | 2.367171 | 2.706392 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009390 | RBH | 0.000000 | 0.000000 | 0.284200 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009360 | RBH | 0.0 | 1.435245 | 1.127660 |
