Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0532150 | OGI:10063330 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:20687168-20689079 | ||||||||
| Gene Symbol | OsHDMA704, HDMA704, OsPAO11, PAO11 | ||||||||||
| DNA seq | ATGCGTGACCATTATTTGGATGAGTCTGATACAAGAAAGAAGGTGTTAAGTGACAACCTTGTGAGACTTGAGTGCATATCAGAAATTGATTCCAGGAATGACAAAGCTAAGAACCCATCAGTTGACCATGCCAATTGTGCCGATGTTGACAGCTCAAAAATGACTGGTGATAACTGTACTCAGAGGAGCTACTCAAATGAGAATGCCTGCCTAATAAATATTAGGGATCATTCTACAGATAGTGGAGCCGTAGACAGTCGGTTCACAAGGGCATGGGTTGATACAGATACAATCTTCATTGATGGTGTCAAGGATCCTCTAGCCATTGAGAGGTGGCAACAACAGGCAATGGAAGCAGATAAAGAATTCTACAGTCGGATACGTATACCTGATGAAGAAGACTCAAGTAGCCAAAAGCAGACATGTAGGAGTTCTGCCTCACAGGTTGCAGAAAGCAAACCTGCATCAGATGGGCAATCACGAGGTGTAGAACATTTAAGGCAGGGTCTTATAAATTTCATATCCACAGTACTGATGCCACTATACAGAAACAAAAAGGTTGACAGGGAGGGGTACAAGGGAATAATGCGGAAAGCTGTCACCAAGGTATATATCTTTCTTTTTGAAGCAGCGTAGTATTTGAACTGTTAGCTTGATGAATTATTGCCTCAGCATTTTTTAATATACTTTTATGAATAAAATCCTTAAATTGTTTGCTTGTACTTCAGAATATTTAGAATAATATTTGTGTTGCTTTATTCCATTATATCGTTATTTTGAGCAGCCTTTTGCAACTCATTCAGGCAACTGAAGAGTGCATCAGGTCATATAATAAGTAATAATACTCACAGTCTCTGTTTGTTCTTGTCTAAACAGATCATTGAGACATGCACAGAAGGAGAGAAGATGATGACTGTTCATGAGTTTCTTGATTCGAAAAGGAAAAATAAGGTGAGCAAAGATCAGTTTGTAGAGAAGTATTTTCATAATTCTGTTCTTGGTCATCCCAATGGCCTTTGACTTCTGTTTTATTCATTCATGTAACTTGGATTTTGGTTCTTCATAATAACATGTTCATATAGCATGTATTTGACGGTAGAATGTTTCTCTTGTCTCTTCATAGATTTTGACCACGATTATGTTACAAACATTGCAGATTCAAACTTTCGTGGATAAGTTGGTTGAGAGGCATTGCCATATGAATCGGCCTCCCAATTCATAACCTGCATAAGCTTATCTGGGAAGCTGTTACATGTGGAGGGAGCAAATTGCATTCATCAGAGCAAGCTGTCCTTCATCAGGCATCGACTCCATATGAGCTAAAGTTCGGTTCTAAAGCAGGCATCATTGGCCCTGCAGTCAAAATCACCTATGAAGGGGACTGCCCGGGACATCATTGATCAGATCAGCACATTCGTTTTTGTGATCGTTGCCATCATCATAGCAGCGGTTAATGGTCTTTCTGGGACAATCGAATGTGTAAACTTCTGTGCATCGACTGGCATGTTGTGCTTGCAGTTGGCTTGGGTGCCAAATTGAGCTATATGGCTTGACTGAAGTGCCATATGAAGATATGGGATTCAGCATGGTTTCATTTGCAATGGACACCCATATACCTTACAGGACATTAGTTTAGTTCATGTGTTACAATGTTAGTGGATTAAACCAGTTCATTGTTCAGAGATAACATCAAAGTAGATCCAGTCTTGTTTGCTCTTTAATGTATAGTTCTTGTTGTTTCTAGCAAGTAGCAACCATCTAACTTAAAGTCGGCGTCATTTAAAAGATGCAGCAGTTTAACAGGGAGGGTTGTGTAGCGTTTGTATATCCTTTGGCCTTGTCTGCTTAAAGGTGAACTCCTCTATTGACTGCTGAGAGCAAAGTGATCGCAAATGAGAGTTAAGCTTCACCT
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| CDS seq | ATGCGTGACCATTATTTGGATGAGTCTGATACAAGAAAGAAGGTGTTAAGTGACAACCTTGTGAGACTTGAGTGCATATCAGAAATTGATTCCAGGAATGACAAAGCTAAGAACCCATCAGTTGACCATGCCAATTGTGCCGATGTTGACAGCTCAAAAATGACTGGTGATAACTGTACTCAGAGGAGCTACTCAAATGAGAATGCCTGCCTAATAAATATTAGGGATCATTCTACAGATAGTGGAGCCGTAGACAGTCGGTTCACAAGGGCATGGGTTGATACAGATACAATCTTCATTGATGGTGTCAAGGATCCTCTAGCCATTGAGAGGTGGCAACAACAGGCAATGGAAGCAGATAAAGAATTCTACAGTCGGATACGTATACCTGATGAAGAAGACTCAAGTAGCCAAAAGCAGACATGTAGGAGTTCTGCCTCACAGGTTGCAGAAAGCAAACCTGCATCAGATGGGCAATCACGAGGTGTAGAACATTTAAGGCAGGGTCTTATAAATTTCATATCCACAGTACTGATGCCACTATACAGAAACAAAAAGGTTGACAGGGAGGGGTACAAGGGAATAATGCGGAAAGCTGTCACCAAGATCATTGAGACATGCACAGAAGGAGAGAAGATGATGACTGTTCATGAGTTTCTTGATTCGAAAAGGAAAAATAAGATTCAAACTTTCGTGGATAAGTTGGTTGAGAGGCATTGCCATATGAATCGGCCTCCCAATTCATAA
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| Protein seq | MRDHYLDESDTRKKVLSDNLVRLECISEIDSRNDKAKNPSVDHANCADVDSSKMTGDNCTQRSYSNENACLINIRDHSTDSGAVDSRFTRAWVDTDTIFIDGVKDPLAIERWQQQAMEADKEFYSRIRIPDEEDSSSQKQTCRSSASQVAESKPASDGQSRGVEHLRQGLINFISTVLMPLYRNKKVDREGYKGIMRKAVTKIIETCTEGEKMMTVHEFLDSKRKNKIQTFVDKLVERHCHMNRPPNS |
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| Function | Lysine-specific histone demethylase 1 homolog 3 [UniProtKB/Swiss-Prot:F4JLS1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0532150 | Os10t0532150-00 | Chr10 | 20687168 | 20689079 | + | irgsp1_rep | ||
| CDS seq | ATGCGTGACCATTATTTGGATGAGTCTGATACAAGAAAGAAGGTGTTAAGTGACAACCTTGTGAGACTTGAGTGCATATCAGAAATTGATTCCAGGAATGACAAAGCTAAGAACCCATCAGTTGACCATGCCAATTGTGCCGATGTTGACAGCTCAAAAATGACTGGTGATAACTGTACTCAGAGGAGCTACTCAAATGAGAATGCCTGCCTAATAAATATTAGGGATCATTCTACAGATAGTGGAGCCGTAGACAGTCGGTTCACAAGGGCATGGGTTGATACAGATACAATCTTCATTGATGGTGTCAAGGATCCTCTAGCCATTGAGAGGTGGCAACAACAGGCAATGGAAGCAGATAAAGAATTCTACAGTCGGATACGTATACCTGATGAAGAAGACTCAAGTAGCCAAAAGCAGACATGTAGGAGTTCTGCCTCACAGGTTGCAGAAAGCAAACCTGCATCAGATGGGCAATCACGAGGTGTAGAACATTTAAGGCAGGGTCTTATAAATTTCATATCCACAGTACTGATGCCACTATACAGAAACAAAAAGGTTGACAGGGAGGGGTACAAGGGAATAATGCGGAAAGCTGTCACCAAGATCATTGAGACATGCACAGAAGGAGAGAAGATGATGACTGTTCATGAGTTTCTTGATTCGAAAAGGAAAAATAAGATTCAAACTTTCGTGGATAAGTTGGTTGAGAGGCATTGCCATATGAATCGGCCTCCCAATTCATAA
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| Protein seq | MRDHYLDESDTRKKVLSDNLVRLECISEIDSRNDKAKNPSVDHANCADVDSSKMTGDNCTQRSYSNENACLINIRDHSTDSGAVDSRFTRAWVDTDTIFIDGVKDPLAIERWQQQAMEADKEFYSRIRIPDEEDSSSQKQTCRSSASQVAESKPASDGQSRGVEHLRQGLINFISTVLMPLYRNKKVDREGYKGIMRKAVTKIIETCTEGEKMMTVHEFLDSKRKNKIQTFVDKLVERHCHMNRPPNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0532150 | RBH | 2.991220 | 0.696939 | 6.932374 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38850 | SBH | 1.440620 | 1.276184 | 1.429933 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018050 | RBH | 0.764563 | 10.565805 | 6.511087 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018440 | RBH | 0.604016 | 6.157633 | 3.353820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017820 | SBH | 1.548818 | 5.728056 | 8.309480 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018380 | SBH | 0.229861 | 0.269294 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018130 | RBH | 5.576200 | 9.494494 | 14.633152 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0341400 | SBH | 5.976123 | 13.84542 | 9.9417245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018030 | RBH | 0.443996 | 0.413807 | 1.737113 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0366100 | RBH | 6.107647 | 13.058867 | 14.656683 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017790 | SBH | 0.242173 | 0.175214 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017620 | RBH | 0.470827 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018260 | RBH | 5.326323 | 15.415044 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017830 | SBH | 0.920183 | 0.0 | 0.945798 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018350 | RBH | 0.380410 | 5.230577 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018020 | SBH | 0.882993 | 2.114447 | 3.116861 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018140 | SBH | 3.317122 | 17.680674 | 10.681129 |
