Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0516200 | OGI:10061170 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:19899132-19900795 | ||||||||
| Gene Symbol | RLCK303, OsRLCK303 | ||||||||||
| DNA seq | GTCGAAATCTAAATCAATCATCAACAATATGAACAGAAACAGGAGGCACTCGGTGAACTTTACACGAACAAACGAAAGAATAAAAACCAAAATCTCTTTGGAATCGTAAAATGGACGATCCATTTTCATAATCACCTCACCCTCCCAAATCGCTGCCATTTTTTTTTTGCACCACAATGTGATCGAAATTCCTCCATTAGCACACACAAACCCCACCTTTTGATGCTCCAAATCTTTTCCAAATCATACCACTACTACTTTTTTTCTCCTTTTTTTGATTCTTTTTTTTTTGAGGTGCTCGCCCACTACCCCGCTTTGTTCTAAGCTCCACCCAGTAGGAGGGGTCCACGTGTGCAGGTGACGCCAGATGACGTCATCGTCGTCATCGCAAGTTACAGCTCACCAAAAGCCCCCCAGATCTAAGCGCCTAGGATTCGACACGCCTCGTGTGAATCACAGCTTCCCGTGGCCGTCGGATCTCCTCGCGACGGCCGAGATGGAGCCGTGCGCGCCCTGCTCCAGCGCGCGCACCACGTCGGCCATCGATGGCCGGAGGCTCGGGTTCTCGCCGACGCACGACGCCGCCAGCGACGCCACGGCGGAGGCCTCGCCGGCGTCGTAGGCGCTGCCCAGCCTCTCGTCGACCAGCATGCGGGCGTCGCAGGCGGCGCAGGAGGCGGGCCTGAGGCGCGGCGCGAGGACGGCGGTGAGGAGGCGGCCCTCGGCGGCGCAGAAGGCCTCCATGCCGGTGAGGAGCTCGAGGAGGAGGACGCCGAAGCTGTACACGTCGCTCTTCTTGGTCACCATGCCGGAGCGGATGTAGTGCGGGTCGACGTACCCCGGCGAGCCGAGCATGGTGTGCGCGGAGGACCGGGGGCGGACGGCAGCGGAGAACCCCATCCGCGCCGACCCGAAGTCGCAGAGCTTGGCGGACATGGCCTCGTCGAGGAGCACGTTCGACGCCTTGACGTCGCCGTGCACCACCGCGGGCTCGCACCGGTCGTGCAGGTACTCCAGCGCCCGCGCCACCTGCAGCGCCACCGACGCGCGCCGCGCCCACGGCATCGTCCCCGCGGCCTTCCCGCCGCCGTGCAGCCGCTCGTGCAGGTTCCCGTTCGCCGCGAACTCCAGCACCAGCACGCCTTCCTCTGCAAGGACAAAAAAAAACCAAAGAATTCTTCAGCACGACGCGGTGGCACACAACCTGCTCGAGCAAACGCCCGCGGCGAGGCTCGCGCGAGAACGGGAGCACCCAACCCACCTTGCTGCTCGCAGAAGGCGAGGAGGCGGACGATGTGAGGATGGCGGACGCGGAGGAGAGCGTCGAGCTCCTGGCGGAACACGCGGTGGAGCCGCTCGCTGCTGCGGTGGACCTTGACGGCGGCGAGCGCGCCGGCGACGCGGGCGAGGTACACCGTGCTGAACCCGCCCTCGCCGACCACCGCCGACGTGAACCCGCCCGTCATCGCCTCCACCTGCGCCCACGACAGCCTCCTCGCCGCCCCAGCCACACCACCCTTTCCCCCCTCCTCCTCCTCCCCAAATCCCCCGCCGCCGCTGCCGCCGCCGCAGTCCGCGTCATCGTCGCACCCCCTGTCACCGGCGGCCGAGGCCGCCATGTTCCCGCCGCAGCCGCAGCACAAGAACCTGTATCTCTGCCACAT
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| CDS seq | ATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCCGGTGACAGGGGGTGCGACGATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGGGAAAGGGTGGTGTGGCTGGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGACGGGCGGGTTCACGTCGGCGGTGGTCGGCGAGGGCGGGTTCAGCACGGTGTACCTCGCCCGCGTCGCCGGCGCGCTCGCCGCCGTCAAGGTCCACCGCAGCAGCGAGCGGCTCCACCGCGTGTTCCGCCAGGAGCTCGACGCTCTCCTCCGCGTCCGCCATCCTCACATCGTCCGCCTCCTCGCCTTCTGCGAGCAGCAAGAGGAAGGCGTGCTGGTGCTGGAGTTCGCGGCGAACGGGAACCTGCACGAGCGGCTGCACGGCGGCGGGAAGGCCGCGGGGACGATGCCGTGGGCGCGGCGCGCGTCGGTGGCGCTGCAGGTGGCGCGGGCGCTGGAGTACCTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGTGCTCCTCGACGAGGCCATGTCCGCCAAGCTCTGCGACTTCGGGTCGGCGCGGATGGGGTTCTCCGCTGCCGTCCGCCCCCGGTCCTCCGCGCACACCATGCTCGGCTCGCCGGGGTACGTCGACCCGCACTACATCCGCTCCGGCATGGTGACCAAGAAGAGCGACGTGTACAGCTTCGGCGTCCTCCTCCTCGAGCTCCTCACCGGCATGGAGGCCTTCTGCGCCGCCGAGGGCCGCCTCCTCACCGCCGTCCTCGCGCCGCGCCTCAGGCCCGCCTCCTGCGCCGCCTGCGACGCCCGCATGCTGGTCGACGAGAGGCTGGGCAGCGCCTACGACGCCGGCGAGGCCTCCGCCGTGGCGTCGCTGGCGGCGTCGTGCGTCGGCGAGAACCCGAGCCTCCGGCCATCGATGGCCGACGTGGTGCGCGCGCTGGAGCAGGGCGCGCACGGCTCCATCTCGGCCGTCGCGAGGAGATCCGACGGCCACGGGAAGCTGTGA
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| Protein seq | MWQRYRFLCCGCGGNMAASAAGDRGCDDDADCGGGSGGGGFGEEEEGGKGGVAGAARRLSWAQVEAMTGGFTSAVVGEGGFSTVYLARVAGALAAVKVHRSSERLHRVFRQELDALLRVRHPHIVRLLAFCEQQEEGVLVLEFAANGNLHERLHGGGKAAGTMPWARRASVALQVARALEYLHDRCEPAVVHGDVKASNVLLDEAMSAKLCDFGSARMGFSAAVRPRSSAHTMLGSPGYVDPHYIRSGMVTKKSDVYSFGVLLLELLTGMEAFCAAEGRLLTAVLAPRLRPASCAACDARMLVDERLGSAYDAGEASAVASLAASCVGENPSLRPSMADVVRALEQGAHGSISAVARRSDGHGKL |
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| Function | Salt tolerance receptor-like cytoplasmic kinase 1 [UniProtKB/Swiss-Prot:Q7XR88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0516200 | Os10t0516200-00 | Chr10 | 19899132 | 19900795 | - | irgsp1_rep | ||
| CDS seq | ATGTGGCAGAGATACAGGTTCTTGTGCTGCGGCTGCGGCGGGAACATGGCGGCCTCGGCCGCCGGTGACAGGGGGTGCGACGATGACGCGGACTGCGGCGGCGGCAGCGGCGGCGGGGGATTTGGGGAGGAGGAGGAGGGGGGAAAGGGTGGTGTGGCTGGGGCGGCGAGGAGGCTGTCGTGGGCGCAGGTGGAGGCGATGACGGGCGGGTTCACGTCGGCGGTGGTCGGCGAGGGCGGGTTCAGCACGGTGTACCTCGCCCGCGTCGCCGGCGCGCTCGCCGCCGTCAAGGTCCACCGCAGCAGCGAGCGGCTCCACCGCGTGTTCCGCCAGGAGCTCGACGCTCTCCTCCGCGTCCGCCATCCTCACATCGTCCGCCTCCTCGCCTTCTGCGAGCAGCAAGAGGAAGGCGTGCTGGTGCTGGAGTTCGCGGCGAACGGGAACCTGCACGAGCGGCTGCACGGCGGCGGGAAGGCCGCGGGGACGATGCCGTGGGCGCGGCGCGCGTCGGTGGCGCTGCAGGTGGCGCGGGCGCTGGAGTACCTGCACGACCGGTGCGAGCCCGCGGTGGTGCACGGCGACGTCAAGGCGTCGAACGTGCTCCTCGACGAGGCCATGTCCGCCAAGCTCTGCGACTTCGGGTCGGCGCGGATGGGGTTCTCCGCTGCCGTCCGCCCCCGGTCCTCCGCGCACACCATGCTCGGCTCGCCGGGGTACGTCGACCCGCACTACATCCGCTCCGGCATGGTGACCAAGAAGAGCGACGTGTACAGCTTCGGCGTCCTCCTCCTCGAGCTCCTCACCGGCATGGAGGCCTTCTGCGCCGCCGAGGGCCGCCTCCTCACCGCCGTCCTCGCGCCGCGCCTCAGGCCCGCCTCCTGCGCCGCCTGCGACGCCCGCATGCTGGTCGACGAGAGGCTGGGCAGCGCCTACGACGCCGGCGAGGCCTCCGCCGTGGCGTCGCTGGCGGCGTCGTGCGTCGGCGAGAACCCGAGCCTCCGGCCATCGATGGCCGACGTGGTGCGCGCGCTGGAGCAGGGCGCGCACGGCTCCATCTCGGCCGTCGCGAGGAGATCCGACGGCCACGGGAAGCTGTGA
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| Protein seq | MWQRYRFLCCGCGGNMAASAAGDRGCDDDADCGGGSGGGGFGEEEEGGKGGVAGAARRLSWAQVEAMTGGFTSAVVGEGGFSTVYLARVAGALAAVKVHRSSERLHRVFRQELDALLRVRHPHIVRLLAFCEQQEEGVLVLEFAANGNLHERLHGGGKAAGTMPWARRASVALQVARALEYLHDRCEPAVVHGDVKASNVLLDEAMSAKLCDFGSARMGFSAAVRPRSSAHTMLGSPGYVDPHYIRSGMVTKKSDVYSFGVLLLELLTGMEAFCAAEGRLLTAVLAPRLRPASCAACDARMLVDERLGSAYDAGEASAVASLAASCVGENPSLRPSMADVVRALEQGAHGSISAVARRSDGHGKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0516200 | RBH | 0.447152 | 0.0 | 0.503586 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g37190 | RBH | 0.286441 | 0.0 | 0.146029 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0113000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017140 | RBH | 0.0 | 18.237740 | 3.983123 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0017430 | RBH | 0.0 | 5.764038 | 1.982834 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016930 | RBH | 0.0 | 3.708975 | 4.610380 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0017380 | RBH | 0.078107 | 0.605491 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0017120 | RBH | 1.093410 | 0.000000 | 3.828665 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0327600 | RBH | 1.891133 | 3.1043035 | 3.9512035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017040 | RBH | 0.000000 | 0.179416 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0350800 | RBH | 2.6970465 | 0.9193235 | 12.6188515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016820 | RBH | 0.000000 | 0.058659 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017250 | RBH | 0.0 | 7.928750 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016880 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0017330 | RBH | 0.000000 | 2.497936 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016950 | RBH | 0.0 | 2.566467 | 1.683703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0017160 | RBH | 0.000000 | 8.833276 | 0.882753 |
