Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0499600 | OGI:10059260 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:19062859-19066123 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAACCAAAAAAAAAAAAAAAAAGAAGAAGAATAAAAAAACTTGTTTAAACAACTCCTTACCTTTGCAATCTTGCATCCCAGCATCAGGCAGTGCATCATCATTCATCACCTTCTCCTCCTTCCCGATCCATCCATCTCCTTCCTTGCATCTACTATTTTATTATTGCAATCCACTCCCCCACTGTGCCTTTCTTGGTGGTGGTAGTAGACTAGTAGTAGCAGTAGCTGCATTCTTGCAGAGGCAGCCGAGGAAGTGTGTTGAGTCAGTGGCCATCCATGGCGGCTGGCAGTGGCAGAGAGGAGGCTGCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGGCAAGCAAGGCTCTCTCTATCGCGATCTCATCCTCCGTTTGATTGATTCTTGATTTGATGGTTGGGGGCAATGGCAACTATGGCAGGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGCATGTTCCTCGCCCGCTACGACGACAGCCCCGCCGGCAAGTTCGACGAGGTCTCGTCTCGCCTTCTCCTTCTCCGGCGATCTGTCCCTCTCTCGCTCCGTTAATTTCTTGATCGGATTTCTCGCTGTCTCTCCTTGCAGCTCGTGGTGATCGCCGGCATCGTGTGGAACCCGCCGACCTCCTGCGCGTGAGTCGCCGAGATTGCTGCGTCTTTTTGGCCTAGTTTAATCGAGTCCACCGCTAGTGCTTTTGCCCTTGCCTGATTGGGTGGAGTTCTTGGCCAAGTTGCATTAGATTAGGGGGAAAATAATCCCCGAGCTTTGCATTGCGGCAGGTTCGAGTGATCGAGTCCCTCAAAAAAGCCAATAAAAAAACGCGTCTTGATTAGTGTTGATTGTACTTGAGCACAGGGCTTTGCATATGGGCTCTCCTTTTGCTGCACCCTTTTAATTATTGGGTGTTTGCATGATTCGATTCGATTCCCCTGTACTTGCTCCGTATGGTACGGCCAAGTTGCAGGAAAAAAAAAAGATGACAATTTTTATTGGGAAGGAATATGTGCATGTGGGAAGTGTGGGTTTTTCAGACAGCTGAAAAATGGATAAAATTTGCAAACTTGCTACTTTTCTGAACTTTGTTTCAGATGTCCATACCCAAGGGGGATGCCTAAGATGAGTTGCTTGGTGGTTGATGCTTGACATGAGTGTGTGTGATGGGTTGTGATGCTATCTAATTATTTGATCAAAAGTTCTTGTGTGCTCTGCTGGTTTGGTCTGAAGTCTCTGAATTCGTTCACAGGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGGTGACACCGGGATCCCCTCTCTGGTTTGTTTGTGATGCTATGTCCATTTGCATTGATATTATTACCCTGATCAGTGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACATTCTCACAGGTACTTGGGAAATAAGGTTTGTCAAATGTTTAGAGTACTTGCATGATTAGGTTTGTCAAATGTTTGCCGTCTACAACTTTTTATATTGCTTGGACATTGTTCGAATGTGCTAGACTGAAGCTGATGCGCTTAGAAACAAGCCATTGGTTAAATCAAACAGCTTCCTGAGCTTGCTTGGAATGCGCTCAACTGTCTCCAACCAAGGGAATGACCGTGAGATCGAGATCTCAGAGACCAAGGGCTCTTGTACAAGACATTTGTGCAACATTAGTGTACCGCTTACTGGTGAGTTGAAACTTATCTGCTTAATGCATCAACAAGCATGATCTTTTTTACTGAATGACTGAATTATCTGTTGGAGTTAAAAAAAAAAACCTTACTCTCCTTTAGTTCTTTTCGCTAAAACTGCCTGGGTTTAAAAGTCTGCATCTTATTTAGAGCTACCAAATTCTATATTAGTAAACCTTCTTCATACTACTATTCGTCAAATGACTTCATTCTTCATTTCCAGGGTTCTAATTGTGAAATGGATATCATGTGGAATTCCAAAATGTCTTTAGGATAGCAACTCCCTTTTTTTGGATAATGGATTAAAATCCGGCCTCTACACCAACAAGGGTGTACACGGCCATAGGATAGCAACTGCCTAACCTTATGTCTCAAAAATGGAAGTTACTAAAGCTTCACTTTGTTGATTCAATGCTTTCTTTCACTTTCTAATCATGCAAAAGTGTCAACAGGGTCGCATAAACACAAGTGGATGGGTCCAGCAATCAGAATGTCTCTTCCAAGCTTCAGGTTAGGTCAAAACCAAGTGGAGGGTATTTGTGTTTTCCAAAAGAAAACTGCCAAAGCCTCCACTCTCTGAAGTAGCCATATGTGGTGTTCTTTACAGCGACAATTTTTTTTTCTGAAAATAGAGACCTTTTATCGAATAGCTCAAAACCGAACATGACATGCACTGTGAATTTCAGTGGACAGATAGAGGACCATCCTGATCTTCTCAAGTACTCTTGCCAAGTGGAATGCAGGTGATGACATACCTAACCTCTCTAGACATCATCAAACACACGTTTTATATACCTGTGAACGTGATCCATCCATGCCCCAGCAGTGAATTTTTTCACAATTGTTGCATTATGTCCAAGCAAATACATTGTTGTTGTTCTAGAGTCTGTAGTTCTAATATTTTTACCTGGCAATCACCTTCCTAAACAGTCTTCTCTTGTGCAGAGTGCGCCCGGTAAGGCCTGCTAAGATTTGGAGACCAAGAATTACTGAACCACAGGAGTGTCCTGATGGCAAGATCAGCAGCAAAGGCTCGGAAGTATTAGCTGAACCGGATGCGCAAAAACATACCGTTATGGTCTTGTTATCTAAGCCTATCTTGGCTCTGGAGTTCAACTCTCTGGAAATGCACGTTGATGCTCCGAAAATCGTCATCCCACACTCCAAGAAAAAGGAAGTCAGGTACTCTAGTACATGAATTTGATGTGGGTTATGTACCAATGTACCATGGCTCACAAACCAGGAGTTTTGACCACTTTTGACCTGGTTGTTTGATGAGTTTTTACAATTTCTAGTTGGGTTTTTACCATCATTTTTTTTCTCTCTTGCTAGTAAGGAAGGGAGATGGATGTGTATCATCTCTTGCTTATGTTTTTCTTGGAGTGAAGGGTCTAAAGAAATTGTGTTGAATATGCAAAGTACTTGCTGAGTTGAAAGTTTGGTATAATTTG
More
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| CDS seq | ATGGCGGCTGGCAGTGGCAGAGAGGAGGCTGCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGCATGTTCCTCGCCCGCTACGACGACAGCCCCGCCGGCAAGTTCGACGAGCTCGTGGTGATCGCCGGCATCGTGTGGAACCCGCCGACCTCCTGCGCGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGTGCCATTGTCATTCCTGTAGGAAGTAG |
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| Protein seq | MAAGSGREEAAAAAGYGRGPPWVFRGRALYQLHLVKAATARAFVPRELRLVEAFGYTLGGMFLARYDDSPAGKFDELVVIAGIVWNPPTSCAWAARVLVNSAEACRHGRKCHCHSCRK |
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| Function | Protein NEOXANTHIN-DEFICIENT 1 [UniProtKB/Swiss-Prot:Q0IWM5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0499600 | Os10t0499600-01 | Chr10 | 19062859 | 19063875 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGCTGGCAGTGGCAGAGAGGAGGCTGCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGCATGTTCCTCGCCCGCTACGACGACAGCCCCGCCGGCAAGTTCGACGAGCTCGTGGTGATCGCCGGCATCGTGTGGAACCCGCCGACCTCCTGCGCGTGA
More
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| Protein seq | MAAGSGREEAAAAAGYGRGPPWVFRGRALYQLHLVKAATARAFVPRELRLVEAFGYTLGGMFLARYDDSPAGKFDELVVIAGIVWNPPTSCA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0499600 | Os10t0499600-02 | Chr10 | 19062860 | 19066123 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGCTGGCAGTGGCAGAGAGGAGGCTGCTGCTGCTGCAGGGTACGGGCGCGGGCCGCCATGGGTGTTCAGGGGCAGGGCATTGTACCAGCTGCATTTGGTGAAGGCGGCGACGGCGCGGGCGTTCGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGCATGTTCCTCGCCCGCTACGACGACAGCCCCGCCGGCAAGTTCGACGAGCTCGTGGTGATCGCCGGCATCGTGTGGAACCCGCCGACCTCCTGCGCGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGTGCCATTGTCATTCCTGTAGGAAGTAG
More
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| Protein seq | MAAGSGREEAAAAAGYGRGPPWVFRGRALYQLHLVKAATARAFVPRELRLVEAFGYTLGGMFLARYDDSPAGKFDELVVIAGIVWNPPTSCAWAARVLVNSAEACRHGRKCHCHSCRK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0499600 | RBH | 0.243026 | 0.000000 | 1.223230 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35644 | RBH | 0.154786 | 0.000000 | 0.594746 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016190 | RBH | 0.567434 | 0.0 | 1.598669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016490 | RBH | 0.140371 | 0.0 | 0.644528 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015870 | RBH | 2.405987 | 2.916232 | 1.820289 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016400 | RBH | 0.440067 | 0.061000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016170 | RBH | 2.995528 | 0.0 | 6.247321 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0316300 | RBH | 10.3904895 | 3.7108915 | 40.558985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016090 | RBH | 0.547159 | 0.000000 | 0.161790 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0339000 | RBH | 8.753 | 1.7404635 | 15.7215455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015860 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015740 | RBH | 0.354816 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016260 | RBH | 5.367432 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015970 | RBH | 0.768243 | 0.0 | 0.582894 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016390 | RBH | 0.671549 | 0.181020 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015960 | RBH | 0.224411 | 0.984119 | 0.424328 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016170 | RBH | 3.246779 | 3.434455 | 2.181309 |
