Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0474000 | OGI:10055750 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:17616226-17617209 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTAACACACACGAACTCCTCCCGCTCCTCCTAATGTTGCCAATTTCACACGATCGCCGCAATTTCGCAGAGGAGAAGATGAACTCATCATCATCATCATCTTTCTCGCCATGAACTCGATCTCATCCTTCACCTCCTGCATCTCGTTCAGCTCCCAGAAGATGAGCTCGCCGGCGAGCTTCCGCCGGAGCTCGTGCACGTCGTCCATGGTGAACCCCCGCTCCAGCTTCTCCCCGTCCCAGAGCTCCATGCACTTGATCGCGAAGAGCCCGCACGACGACTCGTCGGTCTGCGCCGGGAGGCCGGCGACCATCCGCAGCTTCCATCCGCCGGCGTCCGCCTCCGCCCCCGCCCGCCCGGCCGCCGCCACGCACCGCGCGACGCCGCCCCGTATCTTGGACATGGCGGCGTCGTAGAATCTGGGGCCGAAGCGGCGGCCGTAGTTGGAGGAGTCGAGGATCCGGTACTCGCCGGCGGCGACGTCGAGCGCCGCCACGAAGAAGTGGGACTGGTGGTTCACCGGGAAGAGCACCGTGTCGTGGGCGAGGTACCTGGCGCCCGTGGCCGACATGTCCGCGTCGTGCCCCGCCGCCGCCGCCGTTCTTGGCGGGAGGGAGCTGACGTACTCCAGCCAGTCCTGCTCCTCGACGGAGCCGAGGAGCACGCGACGGCCGTTGCGGCGGCGGCGGCGGCCGGCTTGGCGGCGGCGGAGGAGGTCGAGGGCGGCGTCGAGGAGCACCCCGGTGATCTGCCTCTCCGGGCCGTCGCGGGACAGGGGCACGGCGAGGCAGCGCAGCGCGTCGGCGCGGACGCGGACGCGCGGCCGCTCCGACGAGACCAGCAGCTTGTCCTTGCGCCCGCCGTGCGCCTCGACGTACGCCATCGTCGCCTCCTCCCGCGCGGCGTCGACGGCCGTGCTGCTCGCCGCCTCCGAGCGGCGGCGCGCGTTCTTGGTCTCCGCAATCCCGATGTTCGACGCCAT
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| CDS seq | ATGGCGTCGAACATCGGGATTGCGGAGACCAAGAACGCGCGCCGCCGCTCGGAGGCGGCGAGCAGCACGGCCGTCGACGCCGCGCGGGAGGAGGCGACGATGGCGTACGTCGAGGCGCACGGCGGGCGCAAGGACAAGCTGCTGGTCTCGTCGGAGCGGCCGCGCGTCCGCGTCCGCGCCGACGCGCTGCGCTGCCTCGCCGTGCCCCTGTCCCGCGACGGCCCGGAGAGGCAGATCACCGGGGTGCTCCTCGACGCCGCCCTCGACCTCCTCCGCCGCCGCCAAGCCGGCCGCCGCCGCCGCCGCAACGGCCGTCGCGTGCTCCTCGGCTCCGTCGAGGAGCAGGACTGGCTGGAGTACGTCAGCTCCCTCCCGCCAAGAACGGCGGCGGCGGCGGGGCACGACGCGGACATGTCGGCCACGGGCGCCAGGTACCTCGCCCACGACACGGTGCTCTTCCCGGTGAACCACCAGTCCCACTTCTTCGTGGCGGCGCTCGACGTCGCCGCCGGCGAGTACCGGATCCTCGACTCCTCCAACTACGGCCGCCGCTTCGGCCCCAGATTCTACGACGCCGCCATGTCCAAGATACGGGGCGGCGTCGCGCGGTGCGTGGCGGCGGCCGGGCGGGCGGGGGCGGAGGCGGACGCCGGCGGATGGAAGCTGCGGATGGTCGCCGGCCTCCCGGCGCAGACCGACGAGTCGTCGTGCGGGCTCTTCGCGATCAAGTGCATGGAGCTCTGGGACGGGGAGAAGCTGGAGCGGGGGTTCACCATGGACGACGTGCACGAGCTCCGGCGGAAGCTCGCCGGCGAGCTCATCTTCTGGGAGCTGAACGAGATGCAGGAGGTGAAGGATGAGATCGAGTTCATGGCGAGAAAGATGATGATGATGATGAGTTCATCTTCTCCTCTGCGAAATTGCGGCGATCGTGTGAAATTGGCAACATTAGGAGGAGCGGGAGGAGTTCGTGTGTGTTACTAA
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| Protein seq | MASNIGIAETKNARRRSEAASSTAVDAAREEATMAYVEAHGGRKDKLLVSSERPRVRVRADALRCLAVPLSRDGPERQITGVLLDAALDLLRRRQAGRRRRRNGRRVLLGSVEEQDWLEYVSSLPPRTAAAAGHDADMSATGARYLAHDTVLFPVNHQSHFFVAALDVAAGEYRILDSSNYGRRFGPRFYDAAMSKIRGGVARCVAAAGRAGAEADAGGWKLRMVAGLPAQTDESSCGLFAIKCMELWDGEKLERGFTMDDVHELRRKLAGELIFWELNEMQEVKDEIEFMARKMMMMMSSSSPLRNCGDRVKLATLGGAGGVRVCY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0474000 | Os10t0474000-00 | Chr10 | 17616226 | 17617209 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTCGAACATCGGGATTGCGGAGACCAAGAACGCGCGCCGCCGCTCGGAGGCGGCGAGCAGCACGGCCGTCGACGCCGCGCGGGAGGAGGCGACGATGGCGTACGTCGAGGCGCACGGCGGGCGCAAGGACAAGCTGCTGGTCTCGTCGGAGCGGCCGCGCGTCCGCGTCCGCGCCGACGCGCTGCGCTGCCTCGCCGTGCCCCTGTCCCGCGACGGCCCGGAGAGGCAGATCACCGGGGTGCTCCTCGACGCCGCCCTCGACCTCCTCCGCCGCCGCCAAGCCGGCCGCCGCCGCCGCCGCAACGGCCGTCGCGTGCTCCTCGGCTCCGTCGAGGAGCAGGACTGGCTGGAGTACGTCAGCTCCCTCCCGCCAAGAACGGCGGCGGCGGCGGGGCACGACGCGGACATGTCGGCCACGGGCGCCAGGTACCTCGCCCACGACACGGTGCTCTTCCCGGTGAACCACCAGTCCCACTTCTTCGTGGCGGCGCTCGACGTCGCCGCCGGCGAGTACCGGATCCTCGACTCCTCCAACTACGGCCGCCGCTTCGGCCCCAGATTCTACGACGCCGCCATGTCCAAGATACGGGGCGGCGTCGCGCGGTGCGTGGCGGCGGCCGGGCGGGCGGGGGCGGAGGCGGACGCCGGCGGATGGAAGCTGCGGATGGTCGCCGGCCTCCCGGCGCAGACCGACGAGTCGTCGTGCGGGCTCTTCGCGATCAAGTGCATGGAGCTCTGGGACGGGGAGAAGCTGGAGCGGGGGTTCACCATGGACGACGTGCACGAGCTCCGGCGGAAGCTCGCCGGCGAGCTCATCTTCTGGGAGCTGAACGAGATGCAGGAGGTGAAGGATGAGATCGAGTTCATGGCGAGAAAGATGATGATGATGATGAGTTCATCTTCTCCTCTGCGAAATTGCGGCGATCGTGTGAAATTGGCAACATTAGGAGGAGCGGGAGGAGTTCGTGTGTGTTACTAA
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| Protein seq | MASNIGIAETKNARRRSEAASSTAVDAAREEATMAYVEAHGGRKDKLLVSSERPRVRVRADALRCLAVPLSRDGPERQITGVLLDAALDLLRRRQAGRRRRRNGRRVLLGSVEEQDWLEYVSSLPPRTAAAAGHDADMSATGARYLAHDTVLFPVNHQSHFFVAALDVAAGEYRILDSSNYGRRFGPRFYDAAMSKIRGGVARCVAAAGRAGAEADAGGWKLRMVAGLPAQTDESSCGLFAIKCMELWDGEKLERGFTMDDVHELRRKLAGELIFWELNEMQEVKDEIEFMARKMMMMMSSSSPLRNCGDRVKLATLGGAGGVRVCY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0474000 | RBH | 0.0 | 0.254447 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33450 | RBH | 0.0 | 0.171137 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0014330 | RBH | 0.0 | 0.0 | 0.373481 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014530 | RBH | 0.0 | 1.089272 | 0.142790 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014020 | RBH | 0.0 | 0.495155 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014370 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0292700 | RBH | 0.340517 | 0.1714895 | 0.8488055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014230 | RBH | 0.0 | 0.0 | 0.125249 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0314500 | RBH | 0.28681 | 0.173812 | 0.1290135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013960 | RBH | 0.0 | 0.0 | 0.230854 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014140 | RBH | 0.0 | 0.0 | 0.657688 |
