Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0466700 | OGI:10054880 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:17227374-17229369 | ||||||||
| Gene Symbol | HLL | ||||||||||
| DNA seq | CAAGCAAACATGCCATTTTCCATTCATCAAGGACACAATCCGCACTGAAAATTTAACTGAAGGTTTGCTTCAAGTTCAGGTTAAACTTGGTTGGAAACAAAAAAGAACTGGAGCACATTATCACATCCGGCACAGAACTGAAAACTACTACTCCAAACAAGCTCTAGACAATGGCATTTGCTGCGCTAGCAATCCTTGGCCAGAGGTCGGCGCACTCCTTACCAATGGGTCCAGTGATAGCAGAACCTGGAAAAGAATACACAGTGAGTAAATTATTGCCTGGTAGGCTTCGAGAGAAAATACAATAACACATAACATATGGGAGTATAGTAGTGTTCTCGCCATACCTTTCATCTCACCCTTGGGATTCACAATCACCCCAGCATTGTCTGCACATCAAATTTCATAACCGGTATTAATTCGATAGACCACATGGCAGCTCCAAATGATAAAACCAATGACAAAATAGCCAAGGGAATAGTGTACAAATGAAATGCTGCTCAAAATGTAAAAGAGACCAAAGAATAAAAGCACACAAAACATGTAGAATGAATAAAAGCTAATGTATTATATTTATGGCATCAGAAGACAAAAATATATGTCACATGGCCAGTCCCAAAGTTTCATAGCGGCGATGCCACTACCTAGGGCAATGGAATATGTGACCGCTTCCAGATGGAGGAACTCTTATGAAGATAAAATCTTTATAAGAAAACCTCTACATCCAACAATGCTTTGTTTGTGACGTTTACTTAGGAATATGCAAACATGTATATAAGTTTGCTCCAGAAAAAGCTGAAGAACCTTGCAGTCCTCCCGTCACTGTGTATTTCCTACGGCAGTGCAAATAAAATAACAGAACAAGCTCCAACGAACAAAATTCAGCAATTGGCCTATACAGCGCAATCAGATAAGTAATGCCAGCCATCTTCCAGTTGAAAAATATTTTGAGAACACCATAGTTATTAAAAGTAGGACCAGCACCATGTCAGGCAATAAAGATCATGTTCCCAACCAAAAGGCCCCATCTAAAACATCTTCCTAGTGAAGACAGTAAAATATAGAAGAATATTTGTACCCTCTTTTATGCCATGTTACAAACTCACAATAAGCAAACACATAAATTTTTGCTTAAAAATAATTCACCAAACTAAAAAAAACCTGCTAACATATTTGGTGTTTTCTGGTAGATTTGATGATAGTTCAAGTAAAATCAACCTAAAGCCTAGCCCCCAAAACAAGCTCACTGTAGCTCATAAGAATGTGTAACTTAATCACGTAATGACGTAAGCATAAAAAAATAGAGCATTGCTCCAATCGTAGCAGCCACAACTGATCAGCATTCTCAATATGGTAAATCGTGTAACCCATAATGAAATTGACACTAATTTATGCAGGTGGACTAAAAGATCACACTAAAATACTTAGAAACCAAACTTAACGCAGCTCATAACACGTCATAATGCAACACTAATCATCAAGACACTAGAGAGCATCACGATTTCACAGATCGGCATGGGCGAAATTGGGTGCAGCTTCCGCGTACCTTCGAAGTACATGTAGACGCCGTCCTTGCGGCGCCACGGCTTGCGCTGGCGGACGATGACGGCGGGCATGACCTTCTTCCGGAGGTCGGGCTTCCCCTTCTTGACGGTGGCCATGACCATGTCGCCGACGCAGGCCGACGGCAGCCGGTTGAGCCTCCCCTTGATGCCCTTCACGGAGATGATGTAGAGGTTCTTGGCGCCGGTGTTGTCGGCGCAGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCGGAACTTGTTCCCCGCCGACCCACCCCTCCCTGCGCCACCATTTCCGACACGCGCGAAGACCAGATCAGCGACGCAGAAGCAGCGGCGGAGGAAGGAGACGGAGCGGAGGTGGGGAGAGAGGTGGCTCGCACGTACCTCGCTTCGACATGGCGGCGTCCGCGGCGGCGGCGGCGGCGCGAGGAGACGAGGACCCG
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| CDS seq | ATGTCGAAGCGAGGGAGGGGTGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGGAGGCTCAACCGGCTGCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGGAAGCCCGACCTCCGGAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGCGTCTACATGTACTTCGAAGACAATGCTGGGGTGATTGTGAATCCCAAGGGTGAGATGAAAGGTTCTGCTATCACTGGACCCATTGGTAAGGAGTGCGCCGACCTCTGGCCAAGGATTGCTAGCGCAGCAAATGCCATTGTCTAG
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV |
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| Function | 60S ribosomal protein L23 [UniProtKB/Swiss-Prot:P49690] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0466700 | Os10t0466700-01 | Chr10 | 17227374 | 17229369 | - | irgsp1_rep | ||
| CDS seq | ATGTCGAAGCGAGGGAGGGGTGGGTCGGCGGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCCAAGAACCTCTACATCATCTCCGTGAAGGGCATCAAGGGGAGGCTCAACCGGCTGCCGTCGGCCTGCGTCGGCGACATGGTCATGGCCACCGTCAAGAAGGGGAAGCCCGACCTCCGGAAGAAGGTCATGCCCGCCGTCATCGTCCGCCAGCGCAAGCCGTGGCGCCGCAAGGACGGCGTCTACATGTACTTCGAAGACAATGCTGGGGTGATTGTGAATCCCAAGGGTGAGATGAAAGGTTCTGCTATCACTGGACCCATTGGTAAGGAGTGCGCCGACCTCTGGCCAAGGATTGCTAGCGCAGCAAATGCCATTGTCTAG
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| Protein seq | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0466700 | RBH | 12.144251 | 17.519098 | 61.818268 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g32920 | RBH | 7.999448 | 11.456755 | 15.478810 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0139100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0013890 | RBH | 9.653956 | 104.792374 | 48.138779 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014100 | RBH | 1.367067 | 47.189350 | 23.336477 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013600 | RBH | 9.498422 | 174.565048 | 56.103355 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0013960 | RBH | 1.787465 | 9.824828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013800 | RBH | 40.657101 | 424.866852 | 136.884628 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0286600 | RBH | 100.0596965 | 224.107979 | 202.171234 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013830 | RBH | 4.087994 | 22.247190 | 10.233572 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0307800 | RBH | 110.1010895 | 407.345215 | 380.210953 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013570 | RBH | 2.045926 | 4.116278 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013450 | RBH | 3.607657 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013820 | RBH | 18.221132 | 397.140717 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013530 | RBH | 6.979332 | 0.0 | 16.940147 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014080 | RBH | 2.343174 | 163.914215 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013800 | RBH | 2.515336 | 138.691910 | 40.884514 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013750 | RBH | 5.464390 | 312.322815 | 87.000580 |
