Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0442000 | OGI:10050860 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:15877678-15880050 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCCTTTTCTTCCTCCTTTTTCTTGTACTCGCAACCTCTCTCACGTTGCGTGTTGGTTGATGTCTTGATGACTCCGCCGCGGGACAAATGGCGAGGGGAAAGTGAGCGCGCGTTCTTCGCCATGGTTTCTTTGCCGTGTCTGGTGGTGCTGCTTCTTGCCGCGGCCGTCGGCGTCGAGGCCGCCGGCGGCGGCGGTGGTGGTGGAGTGGAGTTCGTGTATGATGGGTTCGGTGGCGCGGCGCTGGCGCTCGACGGCATGGCCACCGTGACGCCGGGCGGGCTGCTGCTGCTCACCAACGACACGGACATGAACAAGGGGCACGCGTTCCACCCGGATCCGGTGAGGTTCGTCGGCGGCGGCGGCGGCGGGGGCGGCGGCGTGGTGGCGTCGTTCTCGACCACTTTCGTGTTCGCCATCGTGTCGGAGTTCCTGGACCTGAGCACGAGCGGGTTCGCGTTCCTGGTGGCGCCGAGCAGGGACCTGTCGGCGGCGATGCCGCAGCAGTATCTCGGGATGTTCAACGCCAGCGGCAACGGCGACGCGCGGAACCGGATCTTCGCCGTGGAGTTCGACACGGTGCGCAACCCGGAGTTCGCGGACATCAACAACAACCACGTCGGCGTCGACGTCAACAGCCTCAACTCCTCGGCGGCCGCCACGGCGGGCTACTACGACGACGCCACGGCGGCGTTCCAGAACCTGAGCCTGATAAGCCGGCAGCCGATGCAGGTGTGGGTGGACTACGACGCCGCCGCGGCGGAGGTCACCGTGGCCATGGCCCCGGCGCGGCGGCCGCGGCCCAAGAAGCCGCTCCTCTCCACGGCCGTCAACCTCTCCACCGTCGTCGCCGACGCGGCGTACGTCGGCTTTTCGTCGGCGTCCAGCATCGTGCTGTGCAAGCATTACGTCCTCAGCTGGAGCTTCCGCCTCGGCGGCGGCGGCGCCGCCCCGGCGCTCGACTACGCCAAGCTGCCCAAGCTACCCCGCATTGGGCCCAAGCCTCGGTCCAAGGCGCTCACCGTCGCGCTGCCCATAGTCACCACGGCGATCGTGCTCACCGCCGTCGCCGTCGGCTTCCTCCTCCTCCGCCAGCGGCTCAGGTACGCCGAGCTGCGCGAAGATTGGGAGGTTGAATTTGGGCCGCATCGGTTCTCATTCAAAGATCTTTACGACGCCACCGGCGGGTTCAAGGACAAGCGGCTGCTCGGCGCCGGAGGATTCGGGAGAGTGTACAAGGGCGTGCTACCTCGGTCCCGGACCGAGGTCGCCGTGAAGAGGGTGTCACATGAGTCGAGACAAGGGATGAGGGAGTTCATCGCTGAGGTTGTCAGCATCGGCCGCATTCGACACCGCAACCTCGTGCAATTGCTCGGGTATTGCAGGCGCAAAGGGGAGCTCTTGCTGGTCTACGATTATATGCCAAATGGTAGCCTTGACAAGTACCTGCACGGGTGCGACGAGAAGCCGATCCTCGATTGGGCTCAGAGGATCTACATCATCAAAGGTGTCGCGTCTGGCCTATTGTATATGCACGAGGATTGGGAGCAAGTTGTCATCCATAGAGATATCAAGGCGAGCAATGTGCTTCTTGATAGCGAGATGAATGGACGACTAGGTGACTTTGGACTTGCAAGGTTGTATGACCATGGAGCTGACCCGCAGACCACGCATGTGGTTGGCACCATGGGATACCTGGCGCCGGAGATGGTTCGCTCCGGCAAGGCGACCACTCGCTCCGACGTGTTCGCCTTCGGCGCGTTTCTCCTTGAGGTCACCTGCGGCAGGAGGCCAATAGAGGAGGAGGAGGAGGTCGCCGGCGCCGGCGCTGACGACGACGACCGCTTCGTGCTCGTGGACTGGGTGCTCGGGCACTGGCGCGAGGGCGCCATCACCGACGCGGTGGACGCCAAGCTCCGCGGCGAGTACGACGCCGCGGAGGCGGAGCTGGTGCTGCGGCTGGGGCTGACGTGCCTGCACCCGTCGCCGGCGGCGAGGCCGAGCATGCGGCAGGTGATGCAGTACCTCGACGGCAGCGCGCCGCTGCCGGAGCTGCCGCCGACGTACGTGACGTTCAACATGCTCGCCACCATGGACACGCACCAGAACGTCTACGGGGCGTGGTCGGTCCGGCGGTCGTCGGCGATGAGCGTCGCCACCGTGTCTGACATTGGACTCTCCGGCGGCAGATGACGTAGGCCAGGTGTTCGACATTAGGACTCCAGTTGATTAGGATCAACTTCACGTTGGTAGCACTAATTGTAGACTGTGATTTGACTTTTTAGCTTGCAATTAGCAATTAGCAACAGATGTTATTTGGGGGAGATGGCGTTTGTTTGTTAGATAGTATGAAATTTTGATCTGAACAGTTTCAGG
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| CDS seq | ATGACTCCGCCGCGGGACAAATGGCGAGGGGAAAGTGAGCGCGCGTTCTTCGCCATGGTTTCTTTGCCGTGTCTGGTGGTGCTGCTTCTTGCCGCGGCCGTCGGCGTCGAGGCCGCCGGCGGCGGCGGTGGTGGTGGAGTGGAGTTCGTGTATGATGGGTTCGGTGGCGCGGCGCTGGCGCTCGACGGCATGGCCACCGTGACGCCGGGCGGGCTGCTGCTGCTCACCAACGACACGGACATGAACAAGGGGCACGCGTTCCACCCGGATCCGGTGAGGTTCGTCGGCGGCGGCGGCGGCGGGGGCGGCGGCGTGGTGGCGTCGTTCTCGACCACTTTCGTGTTCGCCATCGTGTCGGAGTTCCTGGACCTGAGCACGAGCGGGTTCGCGTTCCTGGTGGCGCCGAGCAGGGACCTGTCGGCGGCGATGCCGCAGCAGTATCTCGGGATGTTCAACGCCAGCGGCAACGGCGACGCGCGGAACCGGATCTTCGCCGTGGAGTTCGACACGGTGCGCAACCCGGAGTTCGCGGACATCAACAACAACCACGTCGGCGTCGACGTCAACAGCCTCAACTCCTCGGCGGCCGCCACGGCGGGCTACTACGACGACGCCACGGCGGCGTTCCAGAACCTGAGCCTGATAAGCCGGCAGCCGATGCAGGTGTGGGTGGACTACGACGCCGCCGCGGCGGAGGTCACCGTGGCCATGGCCCCGGCGCGGCGGCCGCGGCCCAAGAAGCCGCTCCTCTCCACGGCCGTCAACCTCTCCACCGTCGTCGCCGACGCGGCGTACGTCGGCTTTTCGTCGGCGTCCAGCATCGTGCTGTGCAAGCATTACGTCCTCAGCTGGAGCTTCCGCCTCGGCGGCGGCGGCGCCGCCCCGGCGCTCGACTACGCCAAGCTGCCCAAGCTACCCCGCATTGGGCCCAAGCCTCGGTCCAAGGCGCTCACCGTCGCGCTGCCCATAGTCACCACGGCGATCGTGCTCACCGCCGTCGCCGTCGGCTTCCTCCTCCTCCGCCAGCGGCTCAGGTACGCCGAGCTGCGCGAAGATTGGGAGGTTGAATTTGGGCCGCATCGGTTCTCATTCAAAGATCTTTACGACGCCACCGGCGGGTTCAAGGACAAGCGGCTGCTCGGCGCCGGAGGATTCGGGAGAGTGTACAAGGGCGTGCTACCTCGGTCCCGGACCGAGGTCGCCGTGAAGAGGGTGTCACATGAGTCGAGACAAGGGATGAGGGAGTTCATCGCTGAGGTTGTCAGCATCGGCCGCATTCGACACCGCAACCTCGTGCAATTGCTCGGGTATTGCAGGCGCAAAGGGGAGCTCTTGCTGGTCTACGATTATATGCCAAATGGTAGCCTTGACAAGTACCTGCACGGGTGCGACGAGAAGCCGATCCTCGATTGGGCTCAGAGGATCTACATCATCAAAGGTGTCGCGTCTGGCCTATTGTATATGCACGAGGATTGGGAGCAAGTTGTCATCCATAGAGATATCAAGGCGAGCAATGTGCTTCTTGATAGCGAGATGAATGGACGACTAGGTGACTTTGGACTTGCAAGGTTGTATGACCATGGAGCTGACCCGCAGACCACGCATGTGGTTGGCACCATGGGATACCTGGCGCCGGAGATGGTTCGCTCCGGCAAGGCGACCACTCGCTCCGACGTGTTCGCCTTCGGCGCGTTTCTCCTTGAGGTCACCTGCGGCAGGAGGCCAATAGAGGAGGAGGAGGAGGTCGCCGGCGCCGGCGCTGACGACGACGACCGCTTCGTGCTCGTGGACTGGGTGCTCGGGCACTGGCGCGAGGGCGCCATCACCGACGCGGTGGACGCCAAGCTCCGCGGCGAGTACGACGCCGCGGAGGCGGAGCTGGTGCTGCGGCTGGGGCTGACGTGCCTGCACCCGTCGCCGGCGGCGAGGCCGAGCATGCGGCAGGTGATGCAGTACCTCGACGGCAGCGCGCCGCTGCCGGAGCTGCCGCCGACGTACGTGACGTTCAACATGCTCGCCACCATGGACACGCACCAGAACGTCTACGGGGCGTGGTCGGTCCGGCGGTCGTCGGCGATGAGCGTCGCCACCGTGTCTGACATTGGACTCTCCGGCGGCAGATGA
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| Protein seq | MTPPRDKWRGESERAFFAMVSLPCLVVLLLAAAVGVEAAGGGGGGGVEFVYDGFGGAALALDGMATVTPGGLLLLTNDTDMNKGHAFHPDPVRFVGGGGGGGGGVVASFSTTFVFAIVSEFLDLSTSGFAFLVAPSRDLSAAMPQQYLGMFNASGNGDARNRIFAVEFDTVRNPEFADINNNHVGVDVNSLNSSAAATAGYYDDATAAFQNLSLISRQPMQVWVDYDAAAAEVTVAMAPARRPRPKKPLLSTAVNLSTVVADAAYVGFSSASSIVLCKHYVLSWSFRLGGGGAAPALDYAKLPKLPRIGPKPRSKALTVALPIVTTAIVLTAVAVGFLLLRQRLRYAELREDWEVEFGPHRFSFKDLYDATGGFKDKRLLGAGGFGRVYKGVLPRSRTEVAVKRVSHESRQGMREFIAEVVSIGRIRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLHGCDEKPILDWAQRIYIIKGVASGLLYMHEDWEQVVIHRDIKASNVLLDSEMNGRLGDFGLARLYDHGADPQTTHVVGTMGYLAPEMVRSGKATTRSDVFAFGAFLLEVTCGRRPIEEEEEVAGAGADDDDRFVLVDWVLGHWREGAITDAVDAKLRGEYDAAEAELVLRLGLTCLHPSPAARPSMRQVMQYLDGSAPLPELPPTYVTFNMLATMDTHQNVYGAWSVRRSSAMSVATVSDIGLSGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0442000 | Os10t0442000-01 | Chr10 | 15877678 | 15880050 | + | irgsp1_rep | ||
| CDS seq | ATGACTCCGCCGCGGGACAAATGGCGAGGGGAAAGTGAGCGCGCGTTCTTCGCCATGGTTTCTTTGCCGTGTCTGGTGGTGCTGCTTCTTGCCGCGGCCGTCGGCGTCGAGGCCGCCGGCGGCGGCGGTGGTGGTGGAGTGGAGTTCGTGTATGATGGGTTCGGTGGCGCGGCGCTGGCGCTCGACGGCATGGCCACCGTGACGCCGGGCGGGCTGCTGCTGCTCACCAACGACACGGACATGAACAAGGGGCACGCGTTCCACCCGGATCCGGTGAGGTTCGTCGGCGGCGGCGGCGGCGGGGGCGGCGGCGTGGTGGCGTCGTTCTCGACCACTTTCGTGTTCGCCATCGTGTCGGAGTTCCTGGACCTGAGCACGAGCGGGTTCGCGTTCCTGGTGGCGCCGAGCAGGGACCTGTCGGCGGCGATGCCGCAGCAGTATCTCGGGATGTTCAACGCCAGCGGCAACGGCGACGCGCGGAACCGGATCTTCGCCGTGGAGTTCGACACGGTGCGCAACCCGGAGTTCGCGGACATCAACAACAACCACGTCGGCGTCGACGTCAACAGCCTCAACTCCTCGGCGGCCGCCACGGCGGGCTACTACGACGACGCCACGGCGGCGTTCCAGAACCTGAGCCTGATAAGCCGGCAGCCGATGCAGGTGTGGGTGGACTACGACGCCGCCGCGGCGGAGGTCACCGTGGCCATGGCCCCGGCGCGGCGGCCGCGGCCCAAGAAGCCGCTCCTCTCCACGGCCGTCAACCTCTCCACCGTCGTCGCCGACGCGGCGTACGTCGGCTTTTCGTCGGCGTCCAGCATCGTGCTGTGCAAGCATTACGTCCTCAGCTGGAGCTTCCGCCTCGGCGGCGGCGGCGCCGCCCCGGCGCTCGACTACGCCAAGCTGCCCAAGCTACCCCGCATTGGGCCCAAGCCTCGGTCCAAGGCGCTCACCGTCGCGCTGCCCATAGTCACCACGGCGATCGTGCTCACCGCCGTCGCCGTCGGCTTCCTCCTCCTCCGCCAGCGGCTCAGGTACGCCGAGCTGCGCGAAGATTGGGAGGTTGAATTTGGGCCGCATCGGTTCTCATTCAAAGATCTTTACGACGCCACCGGCGGGTTCAAGGACAAGCGGCTGCTCGGCGCCGGAGGATTCGGGAGAGTGTACAAGGGCGTGCTACCTCGGTCCCGGACCGAGGTCGCCGTGAAGAGGGTGTCACATGAGTCGAGACAAGGGATGAGGGAGTTCATCGCTGAGGTTGTCAGCATCGGCCGCATTCGACACCGCAACCTCGTGCAATTGCTCGGGTATTGCAGGCGCAAAGGGGAGCTCTTGCTGGTCTACGATTATATGCCAAATGGTAGCCTTGACAAGTACCTGCACGGGTGCGACGAGAAGCCGATCCTCGATTGGGCTCAGAGGATCTACATCATCAAAGGTGTCGCGTCTGGCCTATTGTATATGCACGAGGATTGGGAGCAAGTTGTCATCCATAGAGATATCAAGGCGAGCAATGTGCTTCTTGATAGCGAGATGAATGGACGACTAGGTGACTTTGGACTTGCAAGGTTGTATGACCATGGAGCTGACCCGCAGACCACGCATGTGGTTGGCACCATGGGATACCTGGCGCCGGAGATGGTTCGCTCCGGCAAGGCGACCACTCGCTCCGACGTGTTCGCCTTCGGCGCGTTTCTCCTTGAGGTCACCTGCGGCAGGAGGCCAATAGAGGAGGAGGAGGAGGTCGCCGGCGCCGGCGCTGACGACGACGACCGCTTCGTGCTCGTGGACTGGGTGCTCGGGCACTGGCGCGAGGGCGCCATCACCGACGCGGTGGACGCCAAGCTCCGCGGCGAGTACGACGCCGCGGAGGCGGAGCTGGTGCTGCGGCTGGGGCTGACGTGCCTGCACCCGTCGCCGGCGGCGAGGCCGAGCATGCGGCAGGTGATGCAGTACCTCGACGGCAGCGCGCCGCTGCCGGAGCTGCCGCCGACGTACGTGACGTTCAACATGCTCGCCACCATGGACACGCACCAGAACGTCTACGGGGCGTGGTCGGTCCGGCGGTCGTCGGCGATGAGCGTCGCCACCGTGTCTGACATTGGACTCTCCGGCGGCAGATGA
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| Protein seq | MTPPRDKWRGESERAFFAMVSLPCLVVLLLAAAVGVEAAGGGGGGGVEFVYDGFGGAALALDGMATVTPGGLLLLTNDTDMNKGHAFHPDPVRFVGGGGGGGGGVVASFSTTFVFAIVSEFLDLSTSGFAFLVAPSRDLSAAMPQQYLGMFNASGNGDARNRIFAVEFDTVRNPEFADINNNHVGVDVNSLNSSAAATAGYYDDATAAFQNLSLISRQPMQVWVDYDAAAAEVTVAMAPARRPRPKKPLLSTAVNLSTVVADAAYVGFSSASSIVLCKHYVLSWSFRLGGGGAAPALDYAKLPKLPRIGPKPRSKALTVALPIVTTAIVLTAVAVGFLLLRQRLRYAELREDWEVEFGPHRFSFKDLYDATGGFKDKRLLGAGGFGRVYKGVLPRSRTEVAVKRVSHESRQGMREFIAEVVSIGRIRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLHGCDEKPILDWAQRIYIIKGVASGLLYMHEDWEQVVIHRDIKASNVLLDSEMNGRLGDFGLARLYDHGADPQTTHVVGTMGYLAPEMVRSGKATTRSDVFAFGAFLLEVTCGRRPIEEEEEVAGAGADDDDRFVLVDWVLGHWREGAITDAVDAKLRGEYDAAEAELVLRLGLTCLHPSPAARPSMRQVMQYLDGSAPLPELPPTYVTFNMLATMDTHQNVYGAWSVRRSSAMSVATVSDIGLSGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0442000 | RBH | 0.0 | 0.105510 | 0.851803 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30540 | RBH | 0.0 | 0.070726 | 0.218534 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0148700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012330 | SBH | 0.182759 | 2.307578 | 1.204879 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012530 | SBH | 0.083475 | 0.237608 | 0.404972 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012270 | SBH | 0.0 | 0.530066 | 0.142252 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012530 | RBH | 0.0 | 0.024704 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012280 | RBH | 0.249961 | 2.962940 | 1.925380 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0265000 | RBH | 0.006543 | 0.0065685 | 0.003543 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012310 | SBH | 0.0 | 0.085079 | 0.122368 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0284700 | RBH | 0.4825025 | 1.7179425 | 0.996565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012060 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012030 | RBH | 0.003132 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012440 | RBH | 0.0 | 3.083882 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012030 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012540 | RBH | 0.0 | 1.000651 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012390 | RBH | 0.000000 | 0.365561 | 0.581917 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012330 | SBH | 0.0 | 0.0 | 1.078800 |
