Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0423800 | OGI:10048790 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:15019919-15021149 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATCTTGTTTCCCTGACGACGAAATCAACAGGAACAAGAGCAGCAACCTTGGACATGAGCTGGTTGAGAACAGAGGGGCACCATCTAGCTAGATGCTCAATGCCATCGGTGGCCACCAGAGAATTCAGAGCCGATCGCGAGCTGAGGAACTGGAAGCACGCCTCCTTCAACCCATCGCAGCTGTGCTGCTCAGCCAAGGCCAAGATCGTCGCCACGGACTCGCCGTCGATGTGCTTGCACAGCCTATCCTCGCAGATCAGCTTCAGCCTCTCCAGGTTGTACCTGTCCGCCGCGATGAGCAGATGCTCGACCATTGCAGCAGCTTGAGCTTGATCGTCCTCGTAGTCGTCGTCGTCGTCTTCTTCTTCTTCCTCCAGCTCTTGTGGATTTGTCTCTGGCAACGTGTCGGTGTACATGAAGGTGAGCAGGTTCCTGAACACGTCTGGCTCGATGTCGTCGACGGTGATGACCGCCGTGGCGGCGCTCTCTTTCATCGGGCCGAAGAGCTCTGCCCTGAACACCGGCGACCGGGCCGCGAGAACGCACCTGTGCGCCGTGAACGTCTCGCCGGCGACCAGGAACGTGACGTCGGCGCCTAGTTCCTTGGCCGCGAGGAGGCCGCCGAGATGCTGGCTCAGGTCCGACGGCGGCACCGCGACGGAAAGAGCTGCGGCGTCAGCGGTGCGGGCCTCCGCACGGAGCTCGTCGGAGAAGACGACGACGTCGCACCGGATGGCGAACCGATCGTTCTTGAGATGCTCCGACTGCTCCAGGTACGACCTCTCGATGAATCGACCGAAGCCGAAGCCGGTGGCGGCGAAGTCGTGCAGATCCGTGGCCATGGTGTGGGACGGCACGGACCTCCCGGCCTGATCCAGCAAGCTGAACGTGACACGCGCGTCGACGGGCTCGGAGCCGCCGCTGCCGGCGGCGGCGGCGGCGTCGGCGGCGGGGTTGAGCTCGAGGAAGACGGATATGAAGCCGGCGGTGTCGGAGCGATCGCCGCTGGGGTAGTAGTGGATGCTCCAGGAGTGTCCTCCCACCGTGAAAGGGCGAGACGCGGTGAACCGGCCGGTGGGGAGCTTCGCCTTGGTGCGGGAGTAGCCGTCGATGGTGAGCACGTGGTGCCCTGTCACCGTGCCGGAGACGATGGCGGAGGCGGAGGTCGAGGGCTCGGGTGTCGGCATGGTGATGGTGGTCGACGACGGCGCGAAGGAGATGATGGGTTTG
More
|
||||||||||
| CDS seq | ATGCCGACACCCGAGCCCTCGACCTCCGCCTCCGCCATCGTCTCCGGCACGGTGACAGGGCACCACGTGCTCACCATCGACGGCTACTCCCGCACCAAGGCGAAGCTCCCCACCGGCCGGTTCACCGCGTCTCGCCCTTTCACGGTGGGAGGACACTCCTGGAGCATCCACTACTACCCCAGCGGCGATCGCTCCGACACCGCCGGCTTCATATCCGTCTTCCTCGAGCTCAACCCCGCCGCCGACGCCGCCGCCGCCGCCGGCAGCGGCGGCTCCGAGCCCGTCGACGCGCGTGTCACGTTCAGCTTGCTGGATCAGGCCGGGAGGTCCGTGCCGTCCCACACCATGGCCACGGATCTGCACGACTTCGCCGCCACCGGCTTCGGCTTCGGTCGATTCATCGAGAGGTCGTACCTGGAGCAGTCGGAGCATCTCAAGAACGATCGGTTCGCCATCCGGTGCGACGTCGTCGTCTTCTCCGACGAGCTCCGTGCGGAGGCCCGCACCGCTGACGCCGCAGCTCTTTCCGTCGCGGTGCCGCCGTCGGACCTGAGCCAGCATCTCGGCGGCCTCCTCGCGGCCAAGGAACTAGGCGCCGACGTCACGTTCCTGGTCGCCGGCGAGACGTTCACGGCGCACAGGTGCGTTCTCGCGGCCCGGTCGCCGGTGTTCAGGGCAGAGCTCTTCGGCCCGATGAAAGAGAGCGCCGCCACGGCGGTCATCACCGTCGACGACATCGAGCCAGACGTGTTCAGGAACCTGCTCACCTTCATGTACACCGACACGTTGCCAGAGACAAATCCACAAGAGCTGGAGGAAGAAGAAGAAGACGACGACGACGACTACGAGGACGATCAAGCTCAAGCTGCTGCAATGGTCGAGCATCTGCTCATCGCGGCGGACAGGTACAACCTGGAGAGGCTGAAGCTGATCTGCGAGGATAGGCTGTGCAAGCACATCGACGGCGAGTCCGTGGCGACGATCTTGGCCTTGGCTGAGCAGCACAGCTGCGATGGGTTGAAGGAGGCGTGCTTCCAGTTCCTCAGCTCGCGATCGGCTCTGAATTCTCTGGTGGCCACCGATGGCATTGAGCATCTAGCTAGATGGTGCCCCTCTGTTCTCAACCAGCTCATGTCCAAGGTTGCTGCTCTTGTTCCTGTTGATTTCGTCGTCAGGGAAACAAGATAA
More
|
||||||||||
| Protein seq | MPTPEPSTSASAIVSGTVTGHHVLTIDGYSRTKAKLPTGRFTASRPFTVGGHSWSIHYYPSGDRSDTAGFISVFLELNPAADAAAAAGSGGSEPVDARVTFSLLDQAGRSVPSHTMATDLHDFAATGFGFGRFIERSYLEQSEHLKNDRFAIRCDVVVFSDELRAEARTADAAALSVAVPPSDLSQHLGGLLAAKELGADVTFLVAGETFTAHRCVLAARSPVFRAELFGPMKESAATAVITVDDIEPDVFRNLLTFMYTDTLPETNPQELEEEEEDDDDDYEDDQAQAAAMVEHLLIAADRYNLERLKLICEDRLCKHIDGESVATILALAEQHSCDGLKEACFQFLSSRSALNSLVATDGIEHLARWCPSVLNQLMSKVAALVPVDFVVRETR |
||||||||||
| Function | BTB/POZ and MATH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9M8J9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0423800 | Os10t0423800-00 | Chr10 | 15019919 | 15021149 | - | irgsp1_rep | ||
| CDS seq | ATGCCGACACCCGAGCCCTCGACCTCCGCCTCCGCCATCGTCTCCGGCACGGTGACAGGGCACCACGTGCTCACCATCGACGGCTACTCCCGCACCAAGGCGAAGCTCCCCACCGGCCGGTTCACCGCGTCTCGCCCTTTCACGGTGGGAGGACACTCCTGGAGCATCCACTACTACCCCAGCGGCGATCGCTCCGACACCGCCGGCTTCATATCCGTCTTCCTCGAGCTCAACCCCGCCGCCGACGCCGCCGCCGCCGCCGGCAGCGGCGGCTCCGAGCCCGTCGACGCGCGTGTCACGTTCAGCTTGCTGGATCAGGCCGGGAGGTCCGTGCCGTCCCACACCATGGCCACGGATCTGCACGACTTCGCCGCCACCGGCTTCGGCTTCGGTCGATTCATCGAGAGGTCGTACCTGGAGCAGTCGGAGCATCTCAAGAACGATCGGTTCGCCATCCGGTGCGACGTCGTCGTCTTCTCCGACGAGCTCCGTGCGGAGGCCCGCACCGCTGACGCCGCAGCTCTTTCCGTCGCGGTGCCGCCGTCGGACCTGAGCCAGCATCTCGGCGGCCTCCTCGCGGCCAAGGAACTAGGCGCCGACGTCACGTTCCTGGTCGCCGGCGAGACGTTCACGGCGCACAGGTGCGTTCTCGCGGCCCGGTCGCCGGTGTTCAGGGCAGAGCTCTTCGGCCCGATGAAAGAGAGCGCCGCCACGGCGGTCATCACCGTCGACGACATCGAGCCAGACGTGTTCAGGAACCTGCTCACCTTCATGTACACCGACACGTTGCCAGAGACAAATCCACAAGAGCTGGAGGAAGAAGAAGAAGACGACGACGACGACTACGAGGACGATCAAGCTCAAGCTGCTGCAATGGTCGAGCATCTGCTCATCGCGGCGGACAGGTACAACCTGGAGAGGCTGAAGCTGATCTGCGAGGATAGGCTGTGCAAGCACATCGACGGCGAGTCCGTGGCGACGATCTTGGCCTTGGCTGAGCAGCACAGCTGCGATGGGTTGAAGGAGGCGTGCTTCCAGTTCCTCAGCTCGCGATCGGCTCTGAATTCTCTGGTGGCCACCGATGGCATTGAGCATCTAGCTAGATGGTGCCCCTCTGTTCTCAACCAGCTCATGTCCAAGGTTGCTGCTCTTGTTCCTGTTGATTTCGTCGTCAGGGAAACAAGATAA
More
|
|||||||
| Protein seq | MPTPEPSTSASAIVSGTVTGHHVLTIDGYSRTKAKLPTGRFTASRPFTVGGHSWSIHYYPSGDRSDTAGFISVFLELNPAADAAAAAGSGGSEPVDARVTFSLLDQAGRSVPSHTMATDLHDFAATGFGFGRFIERSYLEQSEHLKNDRFAIRCDVVVFSDELRAEARTADAAALSVAVPPSDLSQHLGGLLAAKELGADVTFLVAGETFTAHRCVLAARSPVFRAELFGPMKESAATAVITVDDIEPDVFRNLLTFMYTDTLPETNPQELEEEEEDDDDDYEDDQAQAAAMVEHLLIAADRYNLERLKLICEDRLCKHIDGESVATILALAEQHSCDGLKEACFQFLSSRSALNSLVATDGIEHLARWCPSVLNQLMSKVAALVPVDFVVRETR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0423800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g28810 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0423400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011210 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011500 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011180 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0252600 | RBH | 0.0266955 | 0.034398 | 0.019183 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011390 | RBH | 0.0 | 0.027648 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0271200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011540 | SBH | 0.0 | 0.885885 | 1.323118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011470 | SBH | 0.0 | 0.0 | 7.660278 |
