Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0167200 | OGI:10016150 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:4629337-4630248 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGTCGGCTTTGTTCCTTTGGCTTTCATGGCTTGTGCTCTCCCTCCTCTCCATCTACCTCCTCGATCTCCTCGCACACTCCCGCCGCCGCCTCCCGCCGGGACCCCGCCCTCTCCCGCTCATCGGCAGCCTCCACCTGCTCGGCGACCAGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACGTACGGCCCGCTCATGTCGCTCCGCCTGGGCGCGGTCACCACGGTGGTCGTCTCCTCGCCGGACGTCGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGGTCCGCCCCCGACGCCGCCGGTGACCACACAAGGAACTCCGTCCCGTGGCTTCCCCCGGGGCCGCGGTGGCGCGAGCTCCGCAAGATCATGGCGACGGAGCTGTTAGCGACGCACCGGCTCGATGCGCTCCACGAGCTCCGGCAGGAGAAGGTGTCGGAGCTGGTGGACCACGTCGCGAGGCTGGCGCGCGACGGCGCGGCGGTGGACGTCGGCCGCGTGGCGTTCACCACCAGCCTGAACCTCCTCTCGCGCACCATCTTCTCGCGCGACCTGACCAGCCTCGACGACCGTGGCGCGTCCAAGGAGTTCCAGCAGGTGGTCACGGACATCATGGGGGCGGCCGGAAGCCCCAACCTGTCGGACTTCTTCCCGGCGCTCGCCGCCGCCGACCTGCAGGGCTGGCGCCGGCGGCTGGCCGGGCTGTTCGAGCGGCTGCACCGGGTGTTCGACGCAGAGATCGAGCATCGCAGGCGTGTCGCCGGAGAGGAGCATGGGAAGGTGAAGGACGACTTTCTGAGGGTGCTCCTGAGGCTCGCCGCCCGCGACGACGACACGGCGGGGCTCGACGACGACACGCTCCGGTCAGTTTTCACGGTAAGGACATGCTCCCTCTGA
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| CDS seq | ATGGCGTCGGCTTTGTTCCTTTGGCTTTCATGGCTTGTGCTCTCCCTCCTCTCCATCTACCTCCTCGATCTCCTCGCACACTCCCGCCGCCGCCTCCCGCCGGGACCCCGCCCTCTCCCGCTCATCGGCAGCCTCCACCTGCTCGGCGACCAGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACGTACGGCCCGCTCATGTCGCTCCGCCTGGGCGCGGTCACCACGGTGGTCGTCTCCTCGCCGGACGTCGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGGTCCGCCCCCGACGCCGCCGGTGACCACACAAGGAACTCCGTCCCGTGGCTTCCCCCGGGGCCGCGGTGGCGCGAGCTCCGCAAGATCATGGCGACGGAGCTGTTAGCGACGCACCGGCTCGATGCGCTCCACGAGCTCCGGCAGGAGAAGGTGTCGGAGCTGGTGGACCACGTCGCGAGGCTGGCGCGCGACGGCGCGGCGGTGGACGTCGGCCGCGTGGCGTTCACCACCAGCCTGAACCTCCTCTCGCGCACCATCTTCTCGCGCGACCTGACCAGCCTCGACGACCGTGGCGCGTCCAAGGAGTTCCAGCAGGTGGTCACGGACATCATGGGGGCGGCCGGAAGCCCCAACCTGTCGGACTTCTTCCCGGCGCTCGCCGCCGCCGACCTGCAGGGCTGGCGCCGGCGGCTGGCCGGGCTGTTCGAGCGGCTGCACCGGGTGTTCGACGCAGAGATCGAGCATCGCAGGCGTGTCGCCGGAGAGGAGCATGGGAAGGTGAAGGACGACTTTCTGAGGGTGCTCCTGAGGCTCGCCGCCCGCGACGACGACACGGCGGGGCTCGACGACGACACGCTCCGGTCAGTTTTCACGGTAAGGACATGCTCCCTCTGA
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| Protein seq | MASALFLWLSWLVLSLLSIYLLDLLAHSRRRLPPGPRPLPLIGSLHLLGDQPHRSLAGLAKTYGPLMSLRLGAVTTVVVSSPDVAREFLQKHDAVFATRSAPDAAGDHTRNSVPWLPPGPRWRELRKIMATELLATHRLDALHELRQEKVSELVDHVARLARDGAAVDVGRVAFTTSLNLLSRTIFSRDLTSLDDRGASKEFQQVVTDIMGAAGSPNLSDFFPALAAADLQGWRRRLAGLFERLHRVFDAEIEHRRRVAGEEHGKVKDDFLRVLLRLAARDDDTAGLDDDTLRSVFTVRTCSL |
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| Function | Geraniol 8-hydroxylase [UniProtKB/Swiss-Prot:Q8VWZ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0167200 | Os10t0167200-00 | Chr10 | 4629337 | 4630248 | + | irgsp1_rep | ||
| CDS seq | ATGGCGTCGGCTTTGTTCCTTTGGCTTTCATGGCTTGTGCTCTCCCTCCTCTCCATCTACCTCCTCGATCTCCTCGCACACTCCCGCCGCCGCCTCCCGCCGGGACCCCGCCCTCTCCCGCTCATCGGCAGCCTCCACCTGCTCGGCGACCAGCCACACCGCTCGCTCGCCGGCCTCGCCAAGACGTACGGCCCGCTCATGTCGCTCCGCCTGGGCGCGGTCACCACGGTGGTCGTCTCCTCGCCGGACGTCGCCCGCGAGTTCCTGCAGAAGCACGACGCCGTCTTCGCCACCCGGTCCGCCCCCGACGCCGCCGGTGACCACACAAGGAACTCCGTCCCGTGGCTTCCCCCGGGGCCGCGGTGGCGCGAGCTCCGCAAGATCATGGCGACGGAGCTGTTAGCGACGCACCGGCTCGATGCGCTCCACGAGCTCCGGCAGGAGAAGGTGTCGGAGCTGGTGGACCACGTCGCGAGGCTGGCGCGCGACGGCGCGGCGGTGGACGTCGGCCGCGTGGCGTTCACCACCAGCCTGAACCTCCTCTCGCGCACCATCTTCTCGCGCGACCTGACCAGCCTCGACGACCGTGGCGCGTCCAAGGAGTTCCAGCAGGTGGTCACGGACATCATGGGGGCGGCCGGAAGCCCCAACCTGTCGGACTTCTTCCCGGCGCTCGCCGCCGCCGACCTGCAGGGCTGGCGCCGGCGGCTGGCCGGGCTGTTCGAGCGGCTGCACCGGGTGTTCGACGCAGAGATCGAGCATCGCAGGCGTGTCGCCGGAGAGGAGCATGGGAAGGTGAAGGACGACTTTCTGAGGGTGCTCCTGAGGCTCGCCGCCCGCGACGACGACACGGCGGGGCTCGACGACGACACGCTCCGGTCAGTTTTCACGGTAAGGACATGCTCCCTCTGA
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| Protein seq | MASALFLWLSWLVLSLLSIYLLDLLAHSRRRLPPGPRPLPLIGSLHLLGDQPHRSLAGLAKTYGPLMSLRLGAVTTVVVSSPDVAREFLQKHDAVFATRSAPDAAGDHTRNSVPWLPPGPRWRELRKIMATELLATHRLDALHELRQEKVSELVDHVARLARDGAAVDVGRVAFTTSLNLLSRTIFSRDLTSLDDRGASKEFQQVVTDIMGAAGSPNLSDFFPALAAADLQGWRRRLAGLFERLHRVFDAEIEHRRRVAGEEHGKVKDDFLRVLLRLAARDDDTAGLDDDTLRSVFTVRTCSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0167200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g08540 | SBH | 0.0 | 0.0 | 0.040972 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0248200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003950 | SBH | 0.0 | 22.770611 | 0.316629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003910 | RBH | 0.0 | 2.607109 | 0.872040 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003830 | RBH | 0.225815 | 12.426895 | 1.417141 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0004140 | RBH | 0.0 | 0.137866 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003900 | SBH | 0.0 | 11.391546 | 1.478809 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0081100 | RBH | 0.538005 | 7.5547725 | 0.0882975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0004040 | RBH | 0.000000 | 2.163783 | 0.211250 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0089900 | RBH | 0.4710745 | 14.4179645 | 0.369699 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003880 | SBH | 0.0 | 0.058615 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003920 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004060 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003800 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0004140 | SBH | 0.052486 | 1.613067 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003980 | RBH | 0.0 | 0.611897 | 0.405933 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0004020 | RBH | 0.0 | 10.880864 | 0.000000 |
