Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0161800 | OGI:10013520 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:3941433-3941895 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGCGCATCTGGCGTCTCCTCCTCCTCTTCCTCCGCCGAATCACGGGAGGAAGGAAGGAAGGAATCTCAGCCCCAGTTCAGCGGTGCGCCGTGACGAGCGTCTCGATGAATCGGAGGCCGTCGAACCGCGGCGCGAACTTCTTCCCCTCCACACGCTGCTCCCCCGCCGCCGCCGCCGCCGCGCGTTCCGCGTCCCTTGACAACGACGAACCCTGACGAGCCAAAAGGAGAAAAGGGGATCAGAGGAGATCGAGGAAGAAGAGAGGGGGAGAAGAAGAAGGGGATCGGGGAGGCAAACCTGGTTGTGGCGGACGAGGAAGGCGTCGCACCTCCCGACGGCGGCGGCGGCGGCCTCCTGCTGCTGCGGCGGCTGATCGGCGCAGTCGCAGGCGAGCAGCTCGGCCCCTGACGCGGCGGCCACGGCGGCGGCGGACGCGACGGCGGCGGCGATCCCCCACTTCAT
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| CDS seq | ATGAAGTGGGGGATCGCCGCCGCCGTCGCGTCCGCCGCCGCCGTGGCCGCCGCGTCAGGGGCCGAGCTGCTCGCCTGCGACTGCGCCGATCAGCCGCCGCAGCAGCAGGAGGCCGCCGCCGCCGCCGTCGGGAGGTGCGACGCCTTCCTCGTCCGCCACAACCAGGTTTGCCTCCCCGATCCCCTTCTTCTTCTCCCCCTCTCTTCTTCCTCGATCTCCTCTGATCCCCTTTTCTCCTTTTGGCTCGTCAGGGTTCGTCGTTGTCAAGGGACGCGGAACGCGCGGCGGCGGCGGCGGCGGGGGAGCAGCGTGTGGAGGGGAAGAAGTTCGCGCCGCGGTTCGACGGCCTCCGATTCATCGAGACGCTCGTCACGGCGCACCGCTGAACTGGGGCTGAGATTCCTTCCTTCCTTCCTCCCGTGA
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| Protein seq | MKWGIAAAVASAAAVAAASGAELLACDCADQPPQQQEAAAAAVGRCDAFLVRHNQVCLPDPLLLLPLSSSSISSDPLFSFWLVRVRRCQGTRNARRRRRRGSSVWRGRSSRRGSTASDSSRRSSRRTAELGLRFLPSFLP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0161800 | Os10t0161800-00 | Chr10 | 3941433 | 3941895 | - | irgsp1_rep | ||
| CDS seq | ATGAAGTGGGGGATCGCCGCCGCCGTCGCGTCCGCCGCCGCCGTGGCCGCCGCGTCAGGGGCCGAGCTGCTCGCCTGCGACTGCGCCGATCAGCCGCCGCAGCAGCAGGAGGCCGCCGCCGCCGCCGTCGGGAGGTGCGACGCCTTCCTCGTCCGCCACAACCAGGTTTGCCTCCCCGATCCCCTTCTTCTTCTCCCCCTCTCTTCTTCCTCGATCTCCTCTGATCCCCTTTTCTCCTTTTGGCTCGTCAGGGTTCGTCGTTGTCAAGGGACGCGGAACGCGCGGCGGCGGCGGCGGCGGGGGAGCAGCGTGTGGAGGGGAAGAAGTTCGCGCCGCGGTTCGACGGCCTCCGATTCATCGAGACGCTCGTCACGGCGCACCGCTGAACTGGGGCTGAGATTCCTTCCTTCCTTCCTCCCGTGA
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| Protein seq | MKWGIAAAVASAAAVAAASGAELLACDCADQPPQQQEAAAAAVGRCDAFLVRHNQVCLPDPLLLLPLSSSSISSDPLFSFWLVRVRRCQGTRNARRRRRRGSSVWRGRSSRRGSTASDSSRRSSRRTAELGLRFLPSFLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0161800 | RBH | 6.985139 | 3.970284 | 7.565677 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07440 | RBH | 4.578418 | 2.681807 | 1.907691 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003340 | RBH | 0.728234 | 0.000000 | 2.413271 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003300 | RBH | 1.039631 | 5.266933 | 5.424708 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003220 | RBH | 4.655481 | 15.721057 | 10.595098 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003530 | RBH | 0.380166 | 0.394354 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003250 | RBH | 19.487225 | 33.480709 | 20.653507 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0065300 | RBH | 9.561942 | 23.8281585 | 7.485435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003460 | RBH | 0.688840 | 2.107600 | 4.679917 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0073000 | RBH | 17.1220955 | 15.2461415 | 8.9087565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003290 | RBH | 1.917082 | 0.483137 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003330 | RBH | 2.054803 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003420 | RBH | 41.155735 | 100.613953 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003180 | RBH | 0.941637 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003530 | RBH | 0.755525 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003350 | RBH | 1.238168 | 8.613032 | 6.054692 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003480 | RBH | 1.728173 | 48.300522 | 12.579427 |
