Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0145000 | OGI:10009870 | 9/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:2731736-2734309 | ||||||||
| Gene Symbol | OsFbox535, Os_F0208 | ||||||||||
| DNA seq | ATGAAAACCTGTTTTTTATTTGTCTTCAAACCGACCACTGAAGGAAACAGTCAAACAGACTACAAGGTTCATAACGCCCACACCACCTTTCAGCAGCAAACAGGTCAAGCATCAGCCAGGTTGTTCACATGGTGCCATCCTACCATGTATACCAACCGCTGGTTTACAACAAAAGTTGAGTTTCAAAGCACAAGACTACAACCAACATGTACCGAGAAATAGCATCCAGAAAGTGATGATCAGCTAAACAGAACTTAAAACTAGAAAAGACCTGGTGAATTCTCCCAACATATAGTGACATCCTCCTTTGTGTTCATCCTTCCAACTGTCCTGAGCACAGTCTCCATCTGAACTTGGCGCGGAAGATCTCACTTGCCACCTGCCTCAGAAACCTGGTTCCCCACTATAGCACTCTCCTGTTTTCCTCCTTTTTCTGCATTAGAGCCCAAGATAACATCCATAAGCAAACAAAATATATTATATCTGTAGGATCTTTAGATAATTTAGCTTTGAAACAGGCTGAATTTCTAGCTTTCAATAAATACCAGCATACAAAAGCAATTCCAATCAAAATGAGTGACTAAAGTTTCTTCTTAAACTTGTTTAGCCAGGGTCCAAAAAGATGATAAACACTAAGAACTGGACCAACACCAAAAGTACAACTAACAACATTCCAAACAAAGTAAGCTAAGGGGCACTTAATGAATAAGTGTTCATCTTTTCAAAACCCTGGCAGAAAAGGCGTTTGCTATCTCCCTTTTTTCCAGCCGTATTAATCAAATTGTCAGAACCGTATTTTTTATTAACAACTACAACAAAAGTTAAATTTTAATTTTCAGTGGGATCTTTATAGAATGAGCTCACCGTAAAGAAAAGGTACAACTGTATTTTTTTTTTCAATCAAACAAGTTCATTACTACTATAAATATAAGTAGAACAGATACCAATCAATATTTGTCATACTTTTGCTTACACATAAATGTGGCATTAAGTGGAAAAGGCATTTTAAAAACTAGTATAAATAGAAGTGGAAGAGACACAAATCAATACTTGTCATACTTTTGCTTAAACATAATGTGGCATTAAGTGGAAAAGGTATCCACAAACGATACATGAGGTATTATTAAAATCGCGCAAGGAGATATCCCCATTAACCCACTTTCAACCTTAGTGTTAACGATGACTACTGAACATCAGATCAATAAAACATAAAATAAAAGTGACTTGGCATGTGTTGCTCTATTTGATATTAATTGCTAGTGCTCCTGAACTGGAACAGGATATGTACTACGTAGTATTGGGTTCAGCACCAACAGAGTAAACATTGTAAGACTTTTCATTATTTAAAGACTACTTGACAGAAAAGGACAAAGGGATAGTTGCTCATACCATTTGGAACATAATAAAAGCTCTCATAGGGATGAACAGTCTTGATGAGTAGGGAACCATCAGTCACCTTCTTGAACTTCAACGTGTCAAGCTCAACCAAGAAAATGCCAGCAGGGGTCCCAATAAACACCACATTTCCATCCCCAGAGAACCCACATATCCAAGCAGGCACGATACGGCGCCGACTGTCCTCCGTCGCCACTGGCAGCGAAAGGAGCTTGTCCATCTCAACGGACTTGCGTGGAACCCAGTTCGTCGCGCCATCATCGGCAACCTCCCGCACCCACAGATGCAGGCAGAAATCGTTGAAAAAGGCGAGGCCAAGCAAATCGTCCTCCAAACTCACAGGACGGATGTTCCACCTGTGGGTTGCGGGCATATCCGATGGCCGCGAGATCAGAGCTAGACTTTGGCTGCCGCAATTGAACTCGAGCAAGCTGCTGCCATTAACAATCCAGTACAGGGCTTCCCCAGCAAGGGCAGCGGGCTCGTCGTAGATCATCAGCAGAGGTAAAGTCACCGGCGTCGAGATCACGTCGCCCCAGGCGCCGATCGCCGAGGAGAACATGCAGCCGAACACGTGGTCGCCGCTGACGAACACGACGGCGACGTTGAAGGCGCCGGAGCGGCGGTCCTCGTCGCCGGCGGAGGCAGCGCAGAACACGGCGGCGTCGCGGTCGGCGTCGGCTTGGACCATCTGGATGGGGGCGGGGAAGCAGACGAACCCCTCGGTCATGGGGTCCCAGACGAGCAGGTTGGCCCAGTCGCAGCTGCGGAGGAGGACGCGGCCGTGGCGGCAGCCGACGAGCCACCACAAGCCATCGCCCGTGTTCCTGCGGAGGGAGGCGACCTGGTCGGCGATGCGGCAGAGGGGCGCGTCGGTGGGGAAGAAGAGGGCGCCATGCGAGGAGTTGAGGAAGAAGCCGAGCACGGGGGCGGTGCGGTGGAACTCGCGGAAGCGGCGGAGGAAGCTAGGGTTGCGGGTGTGGCGGAGCCAGCGCTTGGAGACGAGGGACGCCGAGGAGAGGAAGGAAGGGTGGGGCGGGAGGCGGAGGAGGATCTCGGCGAGGACGTCGTCGGGCAAGGTCTCCGCCGCCGCCGCCGGAGGGGAGGAGTGGCCGCCGGTGACATCGGCCATCGTCAGATCTGGGGATGAGAGAAACGGGGGATTGAATTTTGTGCACT
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| CDS seq | ATGGCCGATGTCACCGGCGGCCACTCCTCCCCTCCGGCGGCGGCGGCGGAGACCTTGCCCGACGACGTCCTCGCCGAGATCCTCCTCCGCCTCCCGCCCCACCCTTCCTTCCTCTCCTCGGCGTCCCTCGTCTCCAAGCGCTGGCTCCGCCACACCCGCAACCCTAGCTTCCTCCGCCGCTTCCGCGAGTTCCACCGCACCGCCCCCGTGCTCGGCTTCTTCCTCAACTCCTCGCATGGCGCCCTCTTCTTCCCCACCGACGCGCCCCTCTGCCGCATCGCCGACCAGGTCGCCTCCCTCCGCAGGAACACGGGCGATGGCTTGTGGTGGCTCGTCGGCTGCCGCCACGGCCGCGTCCTCCTCCGCAGCTGCGACTGGGCCAACCTGCTCGTCTGGGACCCCATGACCGAGGGGTTCGTCTGCTTCCCCGCCCCCATCCAGATGGTCCAAGCCGACGCCGACCGCGACGCCGCCGTGTTCTGCGCTGCCTCCGCCGGCGACGAGGACCGCCGCTCCGGCGCCTTCAACGTCGCCGTCGTGTTCGTCAGCGGCGACCACGTGTTCGGCTGCATGTTCTCCTCGGCGATCGGCGCCTGGGGCGACGTGATCTCGACGCCGGTGACTTTACCTCTGCTGATGATCTACGACGAGCCCGCTGCCCTTGCTGGGGAAGCCCTGTACTGGATTGTTAATGGCAGCAGCTTGCTCGAGTTCAATTGCGGCAGCCAAAGTCTAGCTCTGATCTCGCGGCCATCGGATATGCCCGCAACCCACAGGTGGAACATCCGTCCTGTGAGTTTGGAGGACGATTTGCTTGGCCTCGCCTTTTTCAACGATTTCTGCCTGCATCTGTGGGTGCGGGAGGTTGCCGATGATGGCGCGACGAACTGGGTTCCACGCAAGTCCGTTGAGATGGACAAGCTCCTTTCGCTGCCAGTGGCGACGGAGGACAGTCGGCGCCGTATCGTGCCTGCTTGGATATGTGGGTTCTCTGGGGATGGAAATGTGGTGTTTATTGGGACCCCTGCTGGCATTTTCTTGGTTGAGCTTGACACGTTGAAGTTCAAGAAGGTGACTGATGGTTCCCTACTCATCAAGACTGTTCATCCCTATGAGAGCTTTTATTATGTTCCAAATGAAAAAGGAGGAAAACAGGAGAGTGCTATAGTGGGGAACCAGGTTTCTGAGGCAGGTGGCAAGTGA
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| Protein seq | MADVTGGHSSPPAAAAETLPDDVLAEILLRLPPHPSFLSSASLVSKRWLRHTRNPSFLRRFREFHRTAPVLGFFLNSSHGALFFPTDAPLCRIADQVASLRRNTGDGLWWLVGCRHGRVLLRSCDWANLLVWDPMTEGFVCFPAPIQMVQADADRDAAVFCAASAGDEDRRSGAFNVAVVFVSGDHVFGCMFSSAIGAWGDVISTPVTLPLLMIYDEPAALAGEALYWIVNGSSLLEFNCGSQSLALISRPSDMPATHRWNIRPVSLEDDLLGLAFFNDFCLHLWVREVADDGATNWVPRKSVEMDKLLSLPVATEDSRRRIVPAWICGFSGDGNVVFIGTPAGIFLVELDTLKFKKVTDGSLLIKTVHPYESFYYVPNEKGGKQESAIVGNQVSEAGGK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0145000 | Os10t0145000-01 | Chr10 | 2731736 | 2734309 | - | irgsp1_rep | ||
| CDS seq | ATGGCCGATGTCACCGGCGGCCACTCCTCCCCTCCGGCGGCGGCGGCGGAGACCTTGCCCGACGACGTCCTCGCCGAGATCCTCCTCCGCCTCCCGCCCCACCCTTCCTTCCTCTCCTCGGCGTCCCTCGTCTCCAAGCGCTGGCTCCGCCACACCCGCAACCCTAGCTTCCTCCGCCGCTTCCGCGAGTTCCACCGCACCGCCCCCGTGCTCGGCTTCTTCCTCAACTCCTCGCATGGCGCCCTCTTCTTCCCCACCGACGCGCCCCTCTGCCGCATCGCCGACCAGGTCGCCTCCCTCCGCAGGAACACGGGCGATGGCTTGTGGTGGCTCGTCGGCTGCCGCCACGGCCGCGTCCTCCTCCGCAGCTGCGACTGGGCCAACCTGCTCGTCTGGGACCCCATGACCGAGGGGTTCGTCTGCTTCCCCGCCCCCATCCAGATGGTCCAAGCCGACGCCGACCGCGACGCCGCCGTGTTCTGCGCTGCCTCCGCCGGCGACGAGGACCGCCGCTCCGGCGCCTTCAACGTCGCCGTCGTGTTCGTCAGCGGCGACCACGTGTTCGGCTGCATGTTCTCCTCGGCGATCGGCGCCTGGGGCGACGTGATCTCGACGCCGGTGACTTTACCTCTGCTGATGATCTACGACGAGCCCGCTGCCCTTGCTGGGGAAGCCCTGTACTGGATTGTTAATGGCAGCAGCTTGCTCGAGTTCAATTGCGGCAGCCAAAGTCTAGCTCTGATCTCGCGGCCATCGGATATGCCCGCAACCCACAGGTGGAACATCCGTCCTGTGAGTTTGGAGGACGATTTGCTTGGCCTCGCCTTTTTCAACGATTTCTGCCTGCATCTGTGGGTGCGGGAGGTTGCCGATGATGGCGCGACGAACTGGGTTCCACGCAAGTCCGTTGAGATGGACAAGCTCCTTTCGCTGCCAGTGGCGACGGAGGACAGTCGGCGCCGTATCGTGCCTGCTTGGATATGTGGGTTCTCTGGGGATGGAAATGTGGTGTTTATTGGGACCCCTGCTGGCATTTTCTTGGTTGAGCTTGACACGTTGAAGTTCAAGAAGGTGACTGATGGTTCCCTACTCATCAAGACTGTTCATCCCTATGAGAGCTTTTATTATGTTCCAAATGAAAAAGGAGGAAAACAGGAGAGTGCTATAGTGGGGAACCAGGTTTCTGAGGCAGGTGGCAAGTGA
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| Protein seq | MADVTGGHSSPPAAAAETLPDDVLAEILLRLPPHPSFLSSASLVSKRWLRHTRNPSFLRRFREFHRTAPVLGFFLNSSHGALFFPTDAPLCRIADQVASLRRNTGDGLWWLVGCRHGRVLLRSCDWANLLVWDPMTEGFVCFPAPIQMVQADADRDAAVFCAASAGDEDRRSGAFNVAVVFVSGDHVFGCMFSSAIGAWGDVISTPVTLPLLMIYDEPAALAGEALYWIVNGSSLLEFNCGSQSLALISRPSDMPATHRWNIRPVSLEDDLLGLAFFNDFCLHLWVREVADDGATNWVPRKSVEMDKLLSLPVATEDSRRRIVPAWICGFSGDGNVVFIGTPAGIFLVELDTLKFKKVTDGSLLIKTVHPYESFYYVPNEKGGKQESAIVGNQVSEAGGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0145000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0145200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002460 | RBH | 0.000000 | 0.000000 | 0.642561 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002430 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002370 | RBH | 0.451869 | 0.000000 | 0.488841 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002580 | SBH | 0.035039 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002280 | SBH | 0.000000 | 0.000000 | 0.819380 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0028600 | SBH | 0.3288435 | 2.346588 | 1.7162415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002560 | SBH | 0.000000 | 0.000000 | 0.094876 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0052000 | RBH | 0.648462 | 1.218712 | 2.5093045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002380 | SBH | 0.023057 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002400 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002480 | SBH | 0.655642 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002280 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002480 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002460 | SBH | 0.182555 | 0.217418 | 0.379647 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002420 | SBH | 0.000000 | 1.023840 | 2.036245 |
