Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0141700 | OGI:10009370 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:2553979-2557419 | ||||||||
| Gene Symbol | OsFbox532, Os_F0058 | ||||||||||
| DNA seq | GTTGGGCTATTTCTCTCTCTCCTCTCTCCGTCTCCTACTGCTGCAGCTACTGCCCCTGCCCGCCGCCGCCGCCGCCGCCGGACTCCTCCCCTCCGCCGCTTCGCCTCCTTGCCGGCGAGCAGGCCGGACCGACCGTGCGCGCGGGCGGCGTGGACGGGGCGGGGCTCCTCTCCTCCCCGAGTCCCCGCCCTCCCCTGTGAGTGAGCCCTACTCTACTCTCGCGGAGGGCGGCGGGCGAGGAGGGGCTAGCTGCACCTGGCCTCTTCCACCGACCTGCGTCTCGTGTCGAATCGAATCCAAGGTATTCCTCGTCCTCTCCTCTCGTAGCGCTTCCTCATCCTCCGAGCTAGATCCGTCCTTACCCTTACTTTGGGGATTGCTTTGTTTCAGCTGTAAGTTAAATGGTATGATGGTGCTAGCTAGTATATTCTGATGACCTCGATTTGAGTATTGATTTAGGGTGGAGGTTTTAAATCAACAATGTTTTGGGTTAAGGAATATATATGGATGGCTATTCTAACCACATTGTACTGATTTTGCCCTCACTAATTTCCATTTTCCTTATACACACCATTGTATAATAACCTACTTCAAACTTGTGTCTGTCACCGGCAACTATGCTTTGTACGCAAACTTGTAGCCATGGTTCCTGAATTGAATGACGGTAGGCATGAAAAGATGGACGGATTGTGACATCATTATTTTTTTTAGTAGCTTGATATAGGCTTATGTTGTTATTTGTTACTCCATCCGTTTCACAATGTAAGACTTTCTAGCATTGCCCACATTTATATAGATGTTAATGAATCTATACATATAATAATGTCTAGATTAATTAGTATCTATATGAATGTGGGCAATGCTAGAAAGTCTTATATTGTGAAACGGAGGAAGTAGTTCGTTGCAAGGAAATGTCAATGCTCAATGACAAGAGCTGAAATTATTCGTGTACAATTGTGCAGGTCACTTTTTTCTTATCAATAAAAGCTGGAGCAGAAGTCAGTATCCACAGTGAATGATATATACCGTTGTCTTTGTTTCTATAGACTATAGCAAACTTCAGATATTGGCTATTGCAAAGTATAGCCGGGGAAACCATCACACCTTTGCCAAAACTACCGCTGCTAATCAAAATACTAGGATCTAAGGTAATGGAGTGATCTTGAACAGCTATCGGGTTTTTTGTGCATCTTGTCACCATTGTTGCTAATGTTGTTCCATCTTTGGCATTGAGTATAGGTTGTTTCCTGGTGACAATAATTAAAAAAAAATAATGCGCCTTTTGCTTCTTTTTTAAGTTGAAGTTGCATTGCCCATCCTTCCTCACCATGGCAAACATGCTTCCAGACGATGCCCTTATTGAGATCTTACTTCACCTCCCAAAACACCCCACGTGCCTCCTTCGTGCATCCCTTGTCTGCAAGCACTGGCGCTACCTCATCAGAGATAACAAATTTATCAAGCGCTTTCGTGCGTTCCATCAAACACCCCCTGTTCTCGGCATCTTCACCAATTCCACCAGCATCCCTCGCTTTCTACCCATTGGGAACCCTCCTGAATGTGTCACGGTAGGAGCATTCTCCCTACCTGACCCCTACTGGCATGTCCTTGGCTGCCGCCACAGCCGTGTCCTCCTCATTAGCTCAAGCTGGAATAGTCTACAAGTGTGGAACCCCATGACTGGCAACCGGTATGCTGTACCAGTTACACCTGATGTGAATCCTCGTATCAATTATGGACGTGTGCCCGAGAGCCATGCTGCGGTGCTTTGCGCAGCTGGCCACAATGACCATGGTGACTGCAGCTCATGCCCCTTCTTCATAGTATGGGTATTCACCAATATAGGCTATGCTTATATCTCTAGGTACTCGTCAGAGAAGGACACCTGGGACATGATGGCATCTTCACCAGCACCATCGGAGGTTGATTCCAGGCCTAGCATTCTTGTTGGGAATGTCATATATTGGCCACTTAAGTCAAAGCATATTCTTGCATTCGAGCTGGCCACTTCTAGATTATATCATATTGAGTGTCCACCAGAAACACATAGTGTATACAGAAGGAATGTCCATATCATGAAGGCAGAGGATGGTGGGCTAGGTCTGGCTACCATGACAGGGTTCAACCTTCAGTTATGGGCATTGGAGATTAATTCAGGGGGCGTTACAGGATGGGTGCTGCGCAAGACCATTGAGTTGGGTGCAGTCCTTCCGCTGGAAGTGCCCTCTGTACCGTTGACGGATAGTCATTTGGTTAGAAGGCCTCCAGTCAGGATATTAGGTCTTGTGGAGGAAGATGATTTGTTTTTTATATGGACGGCAGTTGGTGTCTTTGCTGTCCAGCTCAAGTCACTGCAGTTCAAAAAGGTGTTTGAAGCTGATGTATCTGCAACTTTTTATCCCTACACCGCCTTTTATACCACAGGTGCTGACATTAATATGCTTTTACTTCAGTTTGTGTTTTGTTCTCTGTTTAATCCTGCATATGCCTGTTAAATTTATTACAAAGACTATATTAAACTAGTTTTACCTGGCGAAAATATTAAACTAGCTTTGATAGTTCTTGTTGCAACAACAGAACCGTATTTGTTTTATTTCAAATATTATGTTCCATTAGCGGAAAGAGCTTGGTTGTTTTGTTACCTCTTTTTTTTGGCAAATGAAGAATGCTATATACAAGCTAGATTGCAATCGTATATCAGGAAATTGACTGATCATGTATGTCGACATGTCGTCTTTTATGGGAGATGAAGTTTTAACTTCCCCCATAACTCTGTTTAGGCTAAATGTAGTTTTGCAGAAATTTTCTGCCTAAATCTATTTTGTACTTTGTTGATCTAACATTCCTTACACTTAGTTTCTCCATTTATTGATTGATTATTTTTCTCTGTTTGTTGAGGCCTTAGCATGTTTTGCTTCCTCCTTTTGCTGGCAGGTGCTGCGTGAGGTTACCAGTGATACTATTGGAGCTTGTATATGATGTGTCCTTTGGGACCATTCTTCTGCATAGCTGTGCAGAAGCTGCTACTAGTTTGTTGGAGAACCTGTTGGAAGACAGCTTCTGCTTGTTTGTATAATAAGATCAGCTTCTAGTTAGTATTACTTATAAGTTGCTGCAGAATTTTGTCGTTTGGCAGCACCGCAGAATTTTTTACTGTGTAGAAGCTGTAGAACATCTATATATCACTTTTCAATTTGAAGAATTGTAAAGAGAGGCAATGGCCGCATTCTAAGCAGGTGCTCTATGGAAAATCCCTAGTTGCGCATGTCATATAGTTAGCCATACTAGTATATAGTAGTATGTTGGTAATAAAGCTCCACGTGTGGACACCTCTGCTTGTTGGGCCATCTTGGTGGGAGGATTCATTTTATGTTTTGAGTGTCACATACTCCTAAGATATTTAATTGATAGTTAAAATAGCTTACTTGGTTGTTTTGTACT
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| CDS seq | TTGGGCTATTTCTCTCTCTCCTCTCTCCGTCTCCTACTGCTGCAGCTACTGCCCCTGCCCGCCGCCGCCGCCGCCGCCGGACTCCTCCCCTCCGCCGCTTCGCCTCCTTGCCGGCGAGCAGGCCGGACCGACCGTGCGCGCGGGCGGCGTGGACGGGGCGGGGCTCCTCTCCTCCCCGAGTCCCCGCCCTCCCCTGTGAGTGAGCCCTACTCTACTCTCGCGGAGGGCGGCGGGCGAGGAGGGGCTAGCTGCACCTGGCCTCTTCCACCGACCTGCGTCTCGTGTCGAATCGAATCCAAGGTCACTTTTTTCTTATCAATAAAAGCTGGAGCAGAAGTCAGTATCCACAGTGAATGA |
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| Protein seq | LGYFSLSSLRLLLLQLLPLPAAAAAAGLLPSAASPPCRRAGRTDRARGRRGRGGAPLLPESPPSPVSEPYSTLAEGGGRGGASCTWPLPPTCVSCRIESKVTFFLSIKAGAEVSIHSE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0141700 | Os10t0141700-01 | Chr10 | 2553979 | 2557419 | + | irgsp1_rep | ||
| CDS seq | TTGGGCTATTTCTCTCTCTCCTCTCTCCGTCTCCTACTGCTGCAGCTACTGCCCCTGCCCGCCGCCGCCGCCGCCGCCGGACTCCTCCCCTCCGCCGCTTCGCCTCCTTGCCGGCGAGCAGGCCGGACCGACCGTGCGCGCGGGCGGCGTGGACGGGGCGGGGCTCCTCTCCTCCCCGAGTCCCCGCCCTCCCCTGTGAGTGAGCCCTACTCTACTCTCGCGGAGGGCGGCGGGCGAGGAGGGGCTAGCTGCACCTGGCCTCTTCCACCGACCTGCGTCTCGTGTCGAATCGAATCCAAGGTCACTTTTTTCTTATCAATAAAAGCTGGAGCAGAAGTCAGTATCCACAGTGAATGA
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| Protein seq | LGYFSLSSLRLLLLQLLPLPAAAAAAGLLPSAASPPCRRAGRTDRARGRRGRGGAPLLPESPPSPVSEPYSTLAEGGGRGGASCTWPLPPTCVSCRIESKVTFFLSIKAGAEVSIHSE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0141700 | RBH | 1.650871 | 2.682070 | 3.098942 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002280 | RBH | 0.841417 | 5.661404 | 5.006579 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002250 | RBH | 0.337032 | 0.417859 | 1.777128 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002230 | RBH | 0.811565 | 2.034864 | 6.007752 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002380 | RBH | 0.232415 | 0.129334 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002120 | SBH | 7.516853 | 9.976406 | 28.103508 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002380 | SBH | 0.415811 | 0.219622 | 1.565187 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002200 | SBH | 0.279231 | 0.218252 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002220 | SBH | 0.947533 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002300 | SBH | 5.907760 | 7.552927 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002110 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002280 | RBH | 0.793222 | 1.613304 | 2.834465 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002220 | RBH | 1.417693 | 7.102009 | 7.091119 |
