Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0131200 | OGI:10024790 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:1913330-1915825 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTCCTTGAATGTTTCCCCACCAACCAATCTTCTCCAGTCTTCCTCCCTTCCATTCAAAGCTCCCTCTGTCCACCTGAGGAGGGAGAAATCTTCGTAGACTCCCCCCTAGATCCAGGCTGTTCTGAAGCTGGAGAAGAGATCCCCCATGGATCTAACCTCCATCTGCCCGTTTCTGCAACGGATGGGGATCGAGGTAAGGAGACCGGATCTATCTCAAAATCAATTTCAAATCTGCATTCATCCCAGCATATCCCCAAGCAGATCTCCAAGCAGATTTCAAATCCCCCCGCCGGCCCAATGTCTTCTCGGCCTCTTTACTCCGCCGTACTTCGACAAGATGGACATCCACCAGTAGCTCGGCGCCTACCGATTGCAAATCACCTCAATCCCTCAATTCTTGGCCGCCCACCGCCTCCTCCGTCTTCAAGAGTGTTGAGCAGTGGGAAAGTTGTTGATTTGACGAGACGCCATTACCACCCCCCCTCTTTCCCGAAGCTGTGCTACTTCCAAGACTGAGAAAGAGCAGCCATGGCAAGAAGTTAAGCAAAGGTTCTAGTGGAGGAAAGGATCCTCATTCAATTCTCCTAACAACCAAGAGATCATGGCTGCAAGAAAGATCCGATTCCTCAAGCACACAGAAGGTAAATGCTTCCGCTGCCTCCAACCCGGTCATAAAGTTGCAGACTGCAGGGATCCTCTTCGTTGTTGGTTTTGCAGAAGATTTGGTCACCTCTCCTCAGCCTGCAGAGAACGCCGCTATAAATTGCAACAACAAGTGCAGTTTCATCCGCCATCCTAGCAACCATCTCCACCACCAGCGCCACCACTGCTTTCCTCCACAGTGTTCCCTCCTCTCAACAACCATCTGAACACTTCCTCTGCTCCTCCCACCATGGCCTCGGTCCCAAGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATGGAACGTCTGAAGCAGCTCTTCACGGCAAGATCGGTGGTGGCCTGGTCTGATGAAGGCCAGAAGGTGGAGATCGGCACATTTGCTGATGACATCCGTTCGGCCTTCCGTATCCATCGCTCCGACATTCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACCATAGCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTGTATCACTTCAAGCCATGGAATGAAAGGCGCAATGCTGAAGTAATTGATGTTCGCTTCCATGCCCGAGTCTGCATTGAAGGTATCCCAATGCATGCAAGATCAGAAGAAGTGGCGACAAAGATCATTGGCTGCAAGAGTTCAGTCCACTACATAGAAGAGTACTCCCGTCGCCGGAACTACAACCGTACCTTTGATCTTTGGATTTGGAGCTCAGACTTGAGCAGCTCCATCCTGAAGGCTTCAAGTTTCTCTATCACAAGGCCAGACAGTGAAGCAAGAGCCACTGATGTTCCTTTTCCTGAGTTGGAGCCGCCCCGGATGCCGGGCATTCTTCCGCAGTTGTTTCTCCTCTTCCCCAACCTCTCTCACCTGATCTGTTGCCCGTGTCACAGGATCAGAGGGCTTTGCTCTTGCTTGAAAGACACCTGGATCCTATGTTCTATGAGGCCACGATGGGAGGTTCCATCTACTCCCCTGATACTTCCCTGCCTCGTACTGCCTCTCCTGTGTTTGTTCTTTCAGCTGCTGCAGACTCACAGGCGACACCAGTTGAGGTGACCCGGCATGATGTGGAGGAGTTCCTGGCGGAGGTGACCACACCCATCCAGCAGCCACTCCTTCCTGCGCCAGGAACCAAGCCACGCCGCCCATGCTGCAACAAGGTGATTACTCCAATACAAAGGCAACGTGAAAGACTGGCCGTGAAAGCCAGACGCAATACAAAGCTTGATTTAATTGCGCAAGAAATACTTGCAAAGAAATTTGGCGTTCTTGATGATAATAAGCGTCTAGATGACCAAATTAAGAAACTTTACTTGCAGCACTACAAGAAACTGCTCTCCCCAGCAGACATGAAGACAATCACGACACTGGTGGAGAATGGAGGCTGCAAAGGCATTCGGCTGCGTGCCAAGAAGGCGGCATCGGTGGTGCCGATATGAAGCCCCAACCGTGACAGAAGACTGCCGGCCAACTGTTGATGATGTTAAGTAGATGGCTTTTGATGTTTGTAATGCAAATGTGCACCTCTTTGTGTTTCTGCCAAGTTTCTTGGCTGTGTTTCAGAGATGGCCATTTGCATCACAAGTCCTCCCCTGCAGATGGAGTCTCCCCCAGTAGTAATGACTTTTATTCATGTCGCAGTTGAACTGTTTCATCCTCAATTGGAATGTCAGAGGCTTGAACAGCCAAGTTAGAAAAAAAAGTGTTAAGCTGTTGGTAGAGCAGATGAATGCTACAATAGTTTGTCTCCAAGAAACAAAGATGAATCAAATCTCTGATGTGGATGTTTTGC
More
|
||||||||||
| CDS seq | ATGGCCTCGGTCCCAAGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATGGAACGTCTGAAGCAGCTCTTCACGGCAAGATCGGTGGTGGCCTGGTCTGATGAAGGCCAGAAGGTGGAGATCGGCACATTTGCTGATGACATCCGTTCGGCCTTCCGTATCCATCGCTCCGACATTCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACCATAGCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTGTATCACTTCAAGCCATGGAATGAAAGGCGCAATGCTGAAGTAATTGATGTTCGCTTCCATGCCCGAGTCTGCATTGAAGGTATCCCAATGCATGCAAGATCAGAAGAAGTGGCGACAAAGATCATTGGCTGCAAGAGTTCAGTCCACTACATAGAAGAGTACTCCCGTCGCCGGAACTACAACCGTACCTTTGATCTTTGGATTTGGAGCTCAGACTTGAGCAGCTCCATCCTGAAGGCTTCAAGTTTCTCTATCACAAGGCCAGACAGTGAAGCAAGAGCCACTGATGTTCCTTTTCCTGAGTTGGAGCCGCCCCGGATGCCGGGCATTCTTCCGCAGTTGTTTCTCCTCTTCCCCAACCTCTCTCACCTGATCTGTTGCCCGTGTCACAGGATCAGAGGGCTTTGCTCTTGCTTGAAAGACACCTGGATCCTATGTTCTATGAGGCCACGATGGGAGGTTCCATCTACTCCCCTGATACTTCCCTGCCTCGTACTGCCTCTCCTGTGTTTGTTCTTTCAGCTGCTGCAGACTCACAGGCGACACCAGTTGAGGTGA
More
|
||||||||||
| Protein seq | MASVPSDLASRPDLGSCMVAATSEMERLKQLFTARSVVAWSDEGQKVEIGTFADDIRSAFRIHRSDIQITKFYPEDFFLTFVNHSDREEVLQEPRLVTRSGRVYHFKPWNERRNAEVIDVRFHARVCIEGIPMHARSEEVATKIIGCKSSVHYIEEYSRRRNYNRTFDLWIWSSDLSSSILKASSFSITRPDSEARATDVPFPELEPPRMPGILPQLFLLFPNLSHLICCPCHRIRGLCSCLKDTWILCSMRPRWEVPSTPLILPCLVLPLLCLFFQLLQTHRRHQLR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0131200 | Os10t0131200-01 | Chr10 | 1913330 | 1915825 | + | irgsp1_rep | ||
| CDS seq | ATGGCCTCGGTCCCAAGTGACTTGGCCTCTCGCCCTGACCTGGGTAGCTGCATGGTGGCGGCGACAAGTGAAATGGAACGTCTGAAGCAGCTCTTCACGGCAAGATCGGTGGTGGCCTGGTCTGATGAAGGCCAGAAGGTGGAGATCGGCACATTTGCTGATGACATCCGTTCGGCCTTCCGTATCCATCGCTCCGACATTCAGATCACGAAGTTCTATCCAGAAGACTTCTTCCTCACTTTTGTTAACCATAGCGATCGTGAGGAAGTGCTGCAAGAGCCAAGGCTGGTAACTCGAAGTGGGAGAGTGTATCACTTCAAGCCATGGAATGAAAGGCGCAATGCTGAAGTAATTGATGTTCGCTTCCATGCCCGAGTCTGCATTGAAGGTATCCCAATGCATGCAAGATCAGAAGAAGTGGCGACAAAGATCATTGGCTGCAAGAGTTCAGTCCACTACATAGAAGAGTACTCCCGTCGCCGGAACTACAACCGTACCTTTGATCTTTGGATTTGGAGCTCAGACTTGAGCAGCTCCATCCTGAAGGCTTCAAGTTTCTCTATCACAAGGCCAGACAGTGAAGCAAGAGCCACTGATGTTCCTTTTCCTGAGTTGGAGCCGCCCCGGATGCCGGGCATTCTTCCGCAGTTGTTTCTCCTCTTCCCCAACCTCTCTCACCTGATCTGTTGCCCGTGTCACAGGATCAGAGGGCTTTGCTCTTGCTTGAAAGACACCTGGATCCTATGTTCTATGAGGCCACGATGGGAGGTTCCATCTACTCCCCTGATACTTCCCTGCCTCGTACTGCCTCTCCTGTGTTTGTTCTTTCAGCTGCTGCAGACTCACAGGCGACACCAGTTGAGGTGA
More
|
|||||||
| Protein seq | MASVPSDLASRPDLGSCMVAATSEMERLKQLFTARSVVAWSDEGQKVEIGTFADDIRSAFRIHRSDIQITKFYPEDFFLTFVNHSDREEVLQEPRLVTRSGRVYHFKPWNERRNAEVIDVRFHARVCIEGIPMHARSEEVATKIIGCKSSVHYIEEYSRRRNYNRTFDLWIWSSDLSSSILKASSFSITRPDSEARATDVPFPELEPPRMPGILPQLFLLFPNLSHLICCPCHRIRGLCSCLKDTWILCSMRPRWEVPSTPLILPCLVLPLLCLFFQLLQTHRRHQLR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0131200 | RBH | 0.313061 | 0.0 | 3.891738 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04130 | RBH | 0.196568 | 0.0 | 1.014433 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003210 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001481 | RBH | 0.0 | 0.250136 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007200 | RBH | 0.0 | 0.0 | 0.0 |
