Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0129100 | OGI:10005900 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:1785224-1788076 | ||||||||
| Gene Symbol | OsFbox518, Os_F0218, OsFbox519 | ||||||||||
| DNA seq | CCAAACAAGAGCAGTATACATGTTTATATGTGCTTTCGGACTCAACTGGAGCAACAAATGTTATGATATGAACCTGAGCAGAGGTCAGTCCACTATTAACAAAGAAGTTCACCACGTCTTTGACCAGGGGATCATCCTCCGAGCATAAGACTTCAACACACGTAAGGTGCTCACATGTACTTGATCTACACCCGGCGTATGATATGAACCTGAGCAGAGGTCAGTCCACTATTTACAAAGAAGTTCACCACGTCTTTGACCAGGGGATCATCCTCCGAGCATAAGACTTCAACACACGTAAGGTGCTCACATGTACTTGATCTACACCCGGCGTATGATATGAACCTGAGCAGAGGTCAGTCCACTATTTACAAAGAAGTTCACCACGTCTTCGACCAGGGGATCATCCTCCGAGCATACGACTTCAACACGCGTAAGGTGCTCACATGTAAATGATCTATCTTCAAGTTTGCCAATGATTCTTTGTGGTTTTTCCTGGTGATAATATAGCAACAAAATAAGATGAGCTAATTCTCGATTGACATGTGAAAAATGATTCAAGAAGGATAAATATGCATTTGGAGGAAAAGATTTACCTTTTCAAGCTTTAGAGTTAGCTTATTTTTGGTGAGGTCTGAAGGAAGACCGTCAATCCATAGAAGTTTGCATCCAGACACCATTGACCGAGAGTCAGGCTGACAAGATTGTTGAATTTTGGGTACAATTGCAAATTGTTTTCAATTGTCAGCTGCACAATATTGAAATGATTATGTGGCAACAGAAAAAATCATGCCATGTTATAGACAAAATTTCACACTAAACATGACAACACAATCCAAAGCACTAACATTATGCCAACCAAAAACCAGAATAAATGATACTATACTAGTTTGCTTTCACCAAGACTTTCGTTGAAAGTTAGGTAGTTACACTAGTCTAATCACAATGCAAAAAACTATTGTGCGGTGCAGCAGGAGTAAGACTTTCAACATTTGCTGAGGCATTTCCATTTGTATGTTGACTTTGAGTATGTCTTAATTTTCAAATTCATGTGCATTAATGTCAATTGAAGTTAGACAATCACCCGGATTTCTTAAAAGATAAATTTTCAGTTGCGAACCCAATATTGCAGCAAACAAGAGCATGTTGAGTTACCAAATGGGAAATGCTCCAGTTTCATTGTGAAATCAAATAGCCAACTTCTTGCTTGACCAACAGGTTGATTGGTATACAAATAAACTGACAACATGAAATAGATTGCATCGAATGGTTGATGGCATCAGTGATCCTTAAAATCATCATGATTTCACACATAAGAATTAGTTATGCAACGCTTAGTTTTGAAGGTGTAATTGTGAATTGTGAAGTGTCAATAAGAAACACCGAGCTTGAGTTTTTTCCTTTTTCATATCAATATCTACATTAAGATTCCTGGATATAATAAGGAAAGTGAGATGTGTAAGACCAATAAGCTTACCTGTTTTCTTCTCCCAACATAATCGAACTCCAAACTTTTAGCAGCAGAAAGGCTCCTGAGATTTTGGAAAAAATCACCAGAGTCTTGCACATGATAAAGTACCAGTAATGAAGTCACTAGTAATGGCATGTCATTAAGCACATATGTGCCATTCAAAGGGCTCCACAACTTCAGATAAGTAACACTGGGGGTCGAAATAGTAGTCTTGTTGCCATAGGAGACATGAGTATTCTTGATGGTCAAAACCTTCAGTGTCTGGGAGGAGATCTCAACATCCTCAACGCTGCATTCATCTAAGAAGAGACCTCTCATTGCTGGACAGCCCATCTCGAGTTGCTTGAAGAATCCTTGCATCAAAATAACATTGGTGAAGTCAATTCTTCTGAGGTAGCGGCAATTGAATGCAGAGTGATTGAGCTCCAATTTGTCACACAGCAGGACAATATCCAGAAAGTGGCTGCTTCTGCACAGCGTGGCTAATCCATCCGTTGATAACTTCCGAGTCCAAGATATGGTTGATTTCCTCATTCAAATCCAATATGCACCTGAACCGAAACGTGTGTATCAAGGGGGCGGGGTCGCGGAGCTCATTCAGCCTTTCCATGAACATCTTGAACGCCAATTCCGTCTCTTGATCATAGTGCTCGGTATCTCTCCGCTTGAACTCGCTGATGTCAGCGTTGATGCAGGGCACGGTGCGCCAGAGGTTGCGCCACCGCCGCGACAGCACGCACATCCGCACAGCCTGGCGCATGGTCAGGAAGGACATGATGCGGAAGACGATGTCGTCGGGGAGGGTGCTGAGCCTGATCTTGCCAGGCGACCCCTCCATGGTGGCCGAGCACGCGCGCAGAGTCGTTTCGTCGAACAGATGGCGCGCGTGGAAACTGCACACAGAAGAGGAAGACCAAGAATCAGGAACCCATCAACCTGCAGCTTAACTTCGAAGAAATATCTGACACCGTAACACAAGAAACAACGGTTACAACGCTCGAGCAGTTTTTCCGTGAAGAACATCCAGAGAAGAAGGATCGATGCAAGAAGAGTTGGGAGGAAGGAAGGAAGGAAAGGAGCCATACCTCGAAATCGCTCGCTCAGGCAGGCGTTTCGTCGAACAGGTGGCGCGCGTGGAAACTGCACAAGACCCAAGAATCAATAAGCCATGAATCCACAGCAGCACAACTCCGAGCAAGATTCGAGATCTCAGCGCAAGAAACAACGCTCGAGCAGTGATTGATCCGTGAAGAACATCTAGAGGAGGGAGGGGATCGATGCAAGAAGAGATGGAAGGGAGGAGGGAGCTGTACGTACCTCGAAATCGCGATTCGCTGCCCTCGAGCGCTCCGGGGAATGGGAGATACGCTTCCTTCGCCACT
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| CDS seq | ATGGAGGGGTCGCCTGGCAAGATCAGGCTCAGCACCCTCCCCGACGACATCGTCTTCCGCATCATGTCCTTCCTGACCATGCGCCAGGCTGTGCGGATGTGCGTGCTGTCGCGGCGGTGGCGCAACCTCTGGCGCACCGTGCCCTGCATCAACGCTGACATCAGCGAGTTCAAGCGGAGAGATACCGAGCACTATGATCAAGAGACGGAATTGGCGTTCAAGATGTTCATGGAAAGGCTGAATGAGCTCCGCGACCCCGCCCCCTTGATACACACGTTTCGGTTCAGGTGCATATTGGATTTGAATGAGGAAATCAACCATATCTTGGACTCGGAAGTTATCAACGGATGGATTAGCCACGCTGTGCAGAAGCAGCCACTTTCTGGATATTGTCCTGCTGTGTGA
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| Protein seq | MEGSPGKIRLSTLPDDIVFRIMSFLTMRQAVRMCVLSRRWRNLWRTVPCINADISEFKRRDTEHYDQETELAFKMFMERLNELRDPAPLIHTFRFRCILDLNEEINHILDSEVINGWISHAVQKQPLSGYCPAV |
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| Function | Putative F-box/LRR-repeat protein At4g13960 [UniProtKB/Swiss-Prot:O23257] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0129100 | Os10t0129100-01 | Chr10 | 1785224 | 1788076 | - | irgsp1_rep | ||
| CDS seq | ATGGAGGGGTCGCCTGGCAAGATCAGGCTCAGCACCCTCCCCGACGACATCGTCTTCCGCATCATGTCCTTCCTGACCATGCGCCAGGCTGTGCGGATGTGCGTGCTGTCGCGGCGGTGGCGCAACCTCTGGCGCACCGTGCCCTGCATCAACGCTGACATCAGCGAGTTCAAGCGGAGAGATACCGAGCACTATGATCAAGAGACGGAATTGGCGTTCAAGATGTTCATGGAAAGGCTGAATGAGCTCCGCGACCCCGCCCCCTTGATACACACGTTTCGGTTCAGGTGCATATTGGATTTGAATGAGGAAATCAACCATATCTTGGACTCGGAAGTTATCAACGGATGGATTAGCCACGCTGTGCAGAAGCAGCCACTTTCTGGATATTGTCCTGCTGTGTGA
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| Protein seq | MEGSPGKIRLSTLPDDIVFRIMSFLTMRQAVRMCVLSRRWRNLWRTVPCINADISEFKRRDTEHYDQETELAFKMFMERLNELRDPAPLIHTFRFRCILDLNEEINHILDSEVINGWISHAVQKQPLSGYCPAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0129100 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03910 | SBH | 0.0 | 0.0 | 0.250038 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0128600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001410 | SBH | 0.000000 | 0.0 | 0.123771 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001400 | SBH | 0.0 | 0.0 | 0.081160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001410 | SBH | 0.044360 | 0.0 | 0.986793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001320 | RBH | 0.000000 | 0.011466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001330 | SBH | 0.667964 | 0.789467 | 0.839396 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031800 | SBH | 0.394214 | 1.1757945 | 0.7663015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001500 | RBH | 0.0 | 0.189303 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0034200 | SBH | 2.079148 | 2.0945665 | 7.0703795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001350 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001320 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001660 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001400 | SBH | 0.101021 | 0.0 | 0.228636 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001280 | SBH | 0.108976 | 0.000000 | 0.000000 |
