Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0573000 | OGI:09059790 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:22917111-22919021 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCCAAACAGGGCCTGAGAGTGACAGTGACAGCCGCGCTCCGGTCCGGCCGCCGGCGAGGAGGAAGAGGAAGAGGAAGACGACCACCATTACCATGCCCGCCACCGCCACGTGTCCAAAGGCCCTCCACGCCCACCTCCTCCGCTCCGGCGCCCTCTTCGCCGACCCCTCCGCGGCGGGCCCCCTCGCTGCCGCCGCCTCCCTCGCCTCCCTCCCCTACGCACTCTCCATCCTCCGCGCCCACCCCACCACCTTCTCCTACAACTCCGCCATTCGCGCCCTCGCCCGCGGGCCCCGCCCCCACCTCGCCATCTCGCTCTACCGCTCCATGCTCTCCCACTCCCGCTCCCACCCCAACAACTACACCTACCCACCACTCCTCGCCGCCTGCGCGCGCCTTGCCGATTCCGATTCCTCCTCAGCTGCAGCTGCAGCTGCTGCGGGGGTTGCCCTCCACGCCTCCCTCTTCCGCCGCGGCCTCGAGTCTCCCGACCGCTTCATCAGGGCATCCCTCCTCTCCTTGTACGCCGCCGCGGGGGACTTGCCCGCTGCACGCCAGGTGTTCGACCTCAGCCCCCCTAACCACAGGGACCTCCCCCTCTGGAACTCGCTCCTCCACGCCTACCTCTCCCGCGCCCACTACGTCCAGGTGCTCCGCCTCTTCCGCACGATGCGCACTGCCGACCACGTCACCCTGCTCGCCCTCCTATCCGCATGCGCCCACCTCGGGGCGCTCCACACCGCCCGCTGGGCGCACGCCTACCTCGCAACCACCTGCAGCTTCCCCATCACAACAAATCTTGCCACCGCGCTCCTCAACATGTACATGAGGTGCGGCGACGTCCAAACCGCATGCTCCCTCTTCCACTCCACTCCCACTCGCCACAAGGACGTCCACACCTGGACCGTCATGATCGCTGGCCTCGCCCTCAACGGCTTCTCCACCGATGCACTCCATTTGTTCACACACATGAAGGACCACAACATACAGCCAGATTCCGTAACCCTCACCGCCGTTCTCAGCGCATGTACGCATGCTGGCATGGTGGACGAGGGCAAGAGGATCCTGCGCCGTATGCCTCTCGACTATCATCTGCAACCCACCATAGAGCACTATGGTTGCACCGTCGATCTGCTTGGCCGAGCAGGCCTGCTAGAGGAGGCATTGGCTCTTATTAGGGCCGTCCCGTTCAAGGCTGACGTTGCCCTATGGGGTGCTCTCTTGGTGGCTTGTAGATGTCACAGGAATTTTGAGATGGGGCAGATGGTTGCGATGGAAATTCTCAGGTTGGATCCCCAGCATGCCGGGGCCTGGGTGTTCTTATCAAATGTATATGCGGCTGCTGGGAAATGGGACCTTGTACAAGAGGTCAGGAGCTCGATGAAACAACACAGGATACACAAGCCTCCAGGATCGAGTGTTGTCGAACTTGATGGTGTTGTTTACGAGTTCTTGTCTGGGGATCATTCACATCCTCAGTCTGATCAGATATATGCAATGCTTGATGAGATAGGCAAAACCTTGAGCCTCAAAGGGCACAAGCCTGCCACTAAACTAGTTACCTTTGACATTGATGAGGAGGACAAAGAAGTTTGTATCTCGCAGCACAGTGAGAAGCTGGCAGTTGCCTTTGGACTGATAAACACGAGGAGAGGGGCTGTTATCCGAATAGTGAAAAACTTGAGAATCTGCGAGGATTGTCACTCTGTCATGAAGGTAGTTTCCGAGGTCTATGATCGAGTGATAGTTGTTAGAGATCGTAACCGTTTCCACCACTTCAAAAGTGGTTCTTGTTCTTGCCTGGACTACTGGTAGCACAGTGACAACAATGTCCCCAGTTTCTTATGTTAAGATCAACTAGCTGTATGCAAGTGTGGTTGGAATTACAGAAGTAGCATTTTCCTATTCTTG
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| CDS seq | ATGCCCGCCACCGCCACGTGTCCAAAGGCCCTCCACGCCCACCTCCTCCGCTCCGGCGCCCTCTTCGCCGACCCCTCCGCGGCGGGCCCCCTCGCTGCCGCCGCCTCCCTCGCCTCCCTCCCCTACGCACTCTCCATCCTCCGCGCCCACCCCACCACCTTCTCCTACAACTCCGCCATTCGCGCCCTCGCCCGCGGGCCCCGCCCCCACCTCGCCATCTCGCTCTACCGCTCCATGCTCTCCCACTCCCGCTCCCACCCCAACAACTACACCTACCCACCACTCCTCGCCGCCTGCGCGCGCCTTGCCGATTCCGATTCCTCCTCAGCTGCAGCTGCAGCTGCTGCGGGGGTTGCCCTCCACGCCTCCCTCTTCCGCCGCGGCCTCGAGTCTCCCGACCGCTTCATCAGGGCATCCCTCCTCTCCTTGTACGCCGCCGCGGGGGACTTGCCCGCTGCACGCCAGGTGTTCGACCTCAGCCCCCCTAACCACTACGTCCAGGTGCTCCGCCTCTTCCGCACGATGCGCACTGCCGACCACGTCACCCTGCTCGCCCTCCTATCCGCATGCGCCCACCTCGGGGCGCTCCACACCGCCCGCTGGGCGCACGCCTACCTCGCAACCACCTGCAGCTTCCCCATCACAACAAATCTTGCCACCGCGCTCCTCAACATGTACATGAGGTGCGGCGACGTCCAAACCGCATGCTCCCTCTTCCACTCCACTCCCACTCGCCACAAGGACGTCCACACCTGGACCGTCATGATCGCTGGCCTCGCCCTCAACGGCTTCTCCACCGATGCACTCCATTTGTTCACACACATGAAGGACCACAACATACAGCCAGATTCCGTAACCCTCACCGCCGTTCTCAGCGCATGTACGCATGCTGGCATGGTGGACGAGGGCAAGAGGATCCTGCGCCGTATGCCTCTCGACTATCATCTGCAACCCACCATAGAGCACTATGGTTGCACCGTCGATCTGCTTGGCCGAGCAGGCCTGCTAGAGGAGGCATTGGCTCTTATTAGGGCCGTCCCGTTCAAGGCTGACGTTGCCCTATGGGGTGCTCTCTTGGTGGCTTGTAGATGTCACAGGAATTTTGAGATGGGGCAGATGGTTGCGATGGAAATTCTCAGGTTGGATCCCCAGCATGCCGGGGCCTGGGTGTTCTTATCAAATGTATATGCGGCTGCTGGGAAATGGGACCTTGTACAAGAGGTCAGGAGCTCGATGAAACAACACAGGATACACAAGCCTCCAGGATCGAGTGTTGTCGAACTTGATGGTGTTGTTTACGAGTTCTTGTCTGGGGATCATTCACATCCTCAGTCTGATCAGATATATGCAATGCTTGATGAGATAGGCAAAACCTTGAGCCTCAAAGGGCACAAGCCTGCCACTAAACTAGTTACCTTTGACATTGATGAGGAGGACAAAGAAGTTTGTATCTCGCAGCACAGTGAGAAGCTGGCAGTTGCCTTTGGACTGATAAACACGAGGAGAGGGGCTGTTATCCGAATAGTGAAAAACTTGAGAATCTGCGAGGATTGTCACTCTGTCATGAAGGTAGTTTCCGAGGTCTATGATCGAGTGATAGTTGTTAGAGATCGTAACCGTTTCCACCACTTCAAAAGTGGTTCTTGTTCTTGCCTGGACTACTGGTAG
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| Protein seq | MPATATCPKALHAHLLRSGALFADPSAAGPLAAAASLASLPYALSILRAHPTTFSYNSAIRALARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDSSSAAAAAAAGVALHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYVQVLRLFRTMRTADHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW |
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| Function | Pentatricopeptide repeat-containing protein At5g66520 [UniProtKB/Swiss-Prot:Q9FJY7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0573000 | Os09t0573000-01 | Chr09 | 22917111 | 22919021 | + | irgsp1_rep | ||
| CDS seq | ATGCCCGCCACCGCCACGTGTCCAAAGGCCCTCCACGCCCACCTCCTCCGCTCCGGCGCCCTCTTCGCCGACCCCTCCGCGGCGGGCCCCCTCGCTGCCGCCGCCTCCCTCGCCTCCCTCCCCTACGCACTCTCCATCCTCCGCGCCCACCCCACCACCTTCTCCTACAACTCCGCCATTCGCGCCCTCGCCCGCGGGCCCCGCCCCCACCTCGCCATCTCGCTCTACCGCTCCATGCTCTCCCACTCCCGCTCCCACCCCAACAACTACACCTACCCACCACTCCTCGCCGCCTGCGCGCGCCTTGCCGATTCCGATTCCTCCTCAGCTGCAGCTGCAGCTGCTGCGGGGGTTGCCCTCCACGCCTCCCTCTTCCGCCGCGGCCTCGAGTCTCCCGACCGCTTCATCAGGGCATCCCTCCTCTCCTTGTACGCCGCCGCGGGGGACTTGCCCGCTGCACGCCAGGTGTTCGACCTCAGCCCCCCTAACCACTACGTCCAGGTGCTCCGCCTCTTCCGCACGATGCGCACTGCCGACCACGTCACCCTGCTCGCCCTCCTATCCGCATGCGCCCACCTCGGGGCGCTCCACACCGCCCGCTGGGCGCACGCCTACCTCGCAACCACCTGCAGCTTCCCCATCACAACAAATCTTGCCACCGCGCTCCTCAACATGTACATGAGGTGCGGCGACGTCCAAACCGCATGCTCCCTCTTCCACTCCACTCCCACTCGCCACAAGGACGTCCACACCTGGACCGTCATGATCGCTGGCCTCGCCCTCAACGGCTTCTCCACCGATGCACTCCATTTGTTCACACACATGAAGGACCACAACATACAGCCAGATTCCGTAACCCTCACCGCCGTTCTCAGCGCATGTACGCATGCTGGCATGGTGGACGAGGGCAAGAGGATCCTGCGCCGTATGCCTCTCGACTATCATCTGCAACCCACCATAGAGCACTATGGTTGCACCGTCGATCTGCTTGGCCGAGCAGGCCTGCTAGAGGAGGCATTGGCTCTTATTAGGGCCGTCCCGTTCAAGGCTGACGTTGCCCTATGGGGTGCTCTCTTGGTGGCTTGTAGATGTCACAGGAATTTTGAGATGGGGCAGATGGTTGCGATGGAAATTCTCAGGTTGGATCCCCAGCATGCCGGGGCCTGGGTGTTCTTATCAAATGTATATGCGGCTGCTGGGAAATGGGACCTTGTACAAGAGGTCAGGAGCTCGATGAAACAACACAGGATACACAAGCCTCCAGGATCGAGTGTTGTCGAACTTGATGGTGTTGTTTACGAGTTCTTGTCTGGGGATCATTCACATCCTCAGTCTGATCAGATATATGCAATGCTTGATGAGATAGGCAAAACCTTGAGCCTCAAAGGGCACAAGCCTGCCACTAAACTAGTTACCTTTGACATTGATGAGGAGGACAAAGAAGTTTGTATCTCGCAGCACAGTGAGAAGCTGGCAGTTGCCTTTGGACTGATAAACACGAGGAGAGGGGCTGTTATCCGAATAGTGAAAAACTTGAGAATCTGCGAGGATTGTCACTCTGTCATGAAGGTAGTTTCCGAGGTCTATGATCGAGTGATAGTTGTTAGAGATCGTAACCGTTTCCACCACTTCAAAAGTGGTTCTTGTTCTTGCCTGGACTACTGGTAG
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| Protein seq | MPATATCPKALHAHLLRSGALFADPSAAGPLAAAASLASLPYALSILRAHPTTFSYNSAIRALARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDSSSAAAAAAAGVALHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYVQVLRLFRTMRTADHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0573000 | RBH | 0.174429 | 0.309985 | 0.642668 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39970 | RBH | 0.372048 | 0.656922 | 0.274125 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0020680 | RBH | 0.041875 | 0.225145 | 0.368363 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0020730 | RBH | 0.115922 | 0.000000 | 0.674846 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020950 | RBH | 1.045501 | 0.000000 | 1.760755 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020700 | RBH | 0.050728 | 0.017807 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020940 | RBH | 1.626700 | 1.112103 | 2.076280 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0020770 | RBH | 0.138428 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0020530 | RBH | 0.414007 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0020530 | RBH | 4.117123 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020560 | RBH | 0.058294 | 0.0 | 0.072805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020690 | RBH | 0.206676 | 0.350657 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G021090 | RBH | 0.107245 | 0.000000 | 0.262979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020830 | RBH | 0.300599 | 1.047545 | 0.925399 |
