Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0545250 | OGI:09063020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:21561515-21561941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAAATGTGCTTAACTTGTATGAAAGCTGCTCGGGGCAAATTGTGAACAAGGATAAGTCCTCTATTATGTTCAGCAAAAATACCTCTCAAGCTGATAGGAAGATGGTAATGGAGATTTTGGATATTTCTACTGAAGCCAGGAATGAGAAGTATCTCGGCCTCCCGGTGTATATGGGCAGATCAAGAGCTAAAACCTTTGCCTATCTGAAGGAAAGGGTGTGGAAAAAGATCCAAGGATGGAAGGAAAAGCTCCTATCAAAGGCAGGAAAGGATATTCTGATAAAGGCTGTGGCTCAAGCTATTCCAACCTTCGCCATGTCCTGTTTTGATCTAACAAAAACGTTATGTGATGAGATTAGTGCAATTATTTGCAGATATTTCTGGTCGCAGCAGGAGACGGAGAACAAAATGCATTGGTTATCTTGGG
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| CDS seq | CAAAATGTGCTTAACTTGTATGAAAGCTGCTCGGGGCAAATTGTGAACAAGGATAAGTCCTCTATTATGTTCAGCAAAAATACCTCTCAAGCTGATAGGAAGATGGTAATGGAGATTTTGGATATTTCTACTGAAGCCAGGAATGAGAAGTATCTCGGCCTCCCGGTGTATATGGGCAGATCAAGAGCTAAAACCTTTGCCTATCTGAAGGAAAGGGTGTGGAAAAAGATCCAAGGATGGAAGGAAAAGCTCCTATCAAAGGCAGGAAAGGATATTCTGATAAAGGCTGTGGCTCAAGCTATTCCAACCTTCGCCATGTCCTGTTTTGATCTAACAAAAACGTTATGTGATGAGATTAGTGCAATTATTTGCAGATATTTCTGGTCGCAGCAGGAGACGGAGAACAAAATGCATTGGTTATCTTGGG
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| Protein seq | QNVLNLYESCSGQIVNKDKSSIMFSKNTSQADRKMVMEILDISTEARNEKYLGLPVYMGRSRAKTFAYLKERVWKKIQGWKEKLLSKAGKDILIKAVAQAIPTFAMSCFDLTKTLCDEISAIICRYFWSQQETENKMHWLSW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0545250 | Os09t0545250-00 | Chr09 | 21561515 | 21561941 | + | irgsp1_rep | ||
| CDS seq | CAAAATGTGCTTAACTTGTATGAAAGCTGCTCGGGGCAAATTGTGAACAAGGATAAGTCCTCTATTATGTTCAGCAAAAATACCTCTCAAGCTGATAGGAAGATGGTAATGGAGATTTTGGATATTTCTACTGAAGCCAGGAATGAGAAGTATCTCGGCCTCCCGGTGTATATGGGCAGATCAAGAGCTAAAACCTTTGCCTATCTGAAGGAAAGGGTGTGGAAAAAGATCCAAGGATGGAAGGAAAAGCTCCTATCAAAGGCAGGAAAGGATATTCTGATAAAGGCTGTGGCTCAAGCTATTCCAACCTTCGCCATGTCCTGTTTTGATCTAACAAAAACGTTATGTGATGAGATTAGTGCAATTATTTGCAGATATTTCTGGTCGCAGCAGGAGACGGAGAACAAAATGCATTGGTTATCTTGGG
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| Protein seq | QNVLNLYESCSGQIVNKDKSSIMFSKNTSQADRKMVMEILDISTEARNEKYLGLPVYMGRSRAKTFAYLKERVWKKIQGWKEKLLSKAGKDILIKAVAQAIPTFAMSCFDLTKTLCDEISAIICRYFWSQQETENKMHWLSW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0545250 | RBH | 0.0 | 0.0 | 1.397463 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g37320 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0361700 | RBH | 0.020399 | 0.0128045 | 0.0161015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0294300 | RBH | 0 | 0 | 0.0053185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
