Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0493700 | OGI:09056080 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:19121959-19125032 | ||||||||
| Gene Symbol | NAC42, OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4 | ||||||||||
| DNA seq | GCAACAAAAATGGATTTTTCATTTATCGTGCACAGCAACTGCACTTCTCAACAATCCATCATCGTTTAATTACATTCAATATATACTTTCATCAAAATGATGAGGACAAAAACATCCAGAAGTTCACCTCAGATGTTTCTTTTTCTCATTTTGTTTTGTTTTAACATCTCTCGCATAATATTCTGAAAGTAAGTGCTAACACCACATAATCCTCTAATATTTTCCTAGATTGTTGCCTTTTTCAATGTAAAGGAATAGAGGAAAGGATAGCAAAACAAGAATTAGTACTTGAAGTAGTAAGAAGCACTGGCCACCAGGATAACCGGGTGCATCCTATTATGTAGAGGGAAACTTCCATAACCCCTTGCTAAGCTTGACTGCAGACCCATTGCTAAAGGTCCACATGATAGCAACAAGTAAAACCATTAACGAGATGAAAATTAGCCCACCGCCTCTTCTTCTGGTGTTGATAAGAGTACTGCTAACTTCTTCTCTTGCAGGTTGTTGTGACCTAAAGCTCGAAATGCGTTGCAGTGTTCTGTTAAGACCTATGTTTTCAGCAGCCATAGCTGGACTGCTAGGAACAGAATCGAGCAAGGCAGATAGAGCCCCATTGAACCATGATTGTGAAGCATTTGAACTCCGGTTAGGCGGTTGCTCATTCACTGTATGAATAATGGTAGCATCTGCAATGTTCAGAAGTAATAGTAGTTTCAATTAGAAGTTGGGACCCTCTGCAGCATTATGCTTCATCTTCATACAAAGAGGAGGCATGCTGGCTGCCTTTTATTGAGAAAACAATAATCAGAAGTTGGACAGTATAGTTTCTGAAATAATTTTGGGTAATAATAAGAGAAGCTTGTAAATGAAATGGCGTTGTTAAGCACCTGATGAATGTGAGAAGACAACATGGTTGTCCTTCATATGGTTCCGCACATTTAGAGCGACTTGATTATGTGCCAATAATTCAGTTGTATGCTGAAATCCCTGGTTCTGAATTCCACTAGCACCAAATTCAACATAATGGTTTTCAGCCACCACACCAGTTCTGTCAAATGAACCAGGCAGAAACATTGGAGCATCAGAGTATTGCAAACTATCAAACACTCCATCATCAGCAGGAATCAAGTTCTGACTTCTTGTACTGCCCAAAATCTGTTCTAAATCTTCTGGGTCGAAGAAATCATTGATTTCAAGGAATTCATCATCACCATCCTGCCTATCATAACTACCCAATACTGACATAGAGCGCAGAGGACTTGTTTCTTCCACAGCATTTGTTTCTCCATTCATTGGCTCGGTGGTGAGAATAGACTCAGTAATTTGATTACTTGGACCAGTTTGCAGATCAAAATTTGGGCTTTCCTGCACCATAGTAGAAAGATTTGCAATGTTGAATGTAGCCCTCTGGCTTCCTTGAAAATCTCCGAAGGCGGCCTGAGTAAGGTCCAAGCAAATAAAGCTTAAGCATATTGCAATAAAATTGTAACAGCATAATTACAATCCCTAGGATGATGTTTTTTTGGTTTTAGGAACATAACATGTTCCCAAGGTGTGGACTAGACATCTAAATTATTGTGTCTTTCAAAACTTGGATTGGAAAAAATTGTATGAGCACAAATGCAGAAGAAATTACACATACTCTACATGATGAACTAGTACAAAATAAAGTGCAAAATTAAGACAAACCTGATGACAATCATGGAGATGAACTGGTGTGGAGAAATCTGGCAGTGATTCGGCATTTTCCTGGTCATTTTCTATTTGCATCAGAAGCCCTTCAATATCCTGAAGCTCACGGACAGTACATTCTTCTGTCACCACAGCACTACTAACAGTGGTAGAATCTGCAACACCAACCTCCTCCCTATGAACACCAAGACAACCCTGATGATAATCATGTTGAAGCTGCGATTGGGGAACGGATGCTGAGAAACCAGAGAGCATTTCAACTGTCTGTTGATCATCCGATATTTGCATCAGAAGTTGCTCGAGACCATCAATTGGAAGTTCAGCGCACGTATTCTCTGCCATCAACAAAGCACTGCCACTAGTCGTAGCATCCGCAACATCTGATTTTCCGCCATCATCACTGAGCCAACCTTGATGAACACGATGCTGAATCTGAACTTGGGAAGTAACATGAGTTGAGAAATCCAATTGCGCTTCGATTATATCCTGATCATTTTCAATTTGCGCAAGGAGCACATCAAGATCCCCACCCGGAAGCTCAAAGTCAGCATGCTCCTCAGTTGTTGCAGCTCTACCACTAGTTGTGGCTGGAGCCGGAAGAGCCGCCTCAGCAGGAAGCTGGTCGTGGTGGTGGTCGTCGTCGTCGAGCCAATCCTCCTCCCGGAAGGGGGCGCCGTACTGCTCGCCGTTCTTGGGCCCGGCGCCGCTCTTGTGGAACAGCTTGTACAGAGCGTACGCCTCGCGGTCGCGCGCGGCGGGCGGGAGCGCGTCGGCGAGGAGGGTGTACTCGTGCATGACCCAGTCCGAGCGCTCCCCGCGCGGGGCGCGGCCGTGGTGGTACACGAGGGTCTTCTTGCTCCCCACCGCGCGCCCCGAGGCGGTGCCGCCGCCGCCGCCGTTGCAGATGGAGCGGTCCTTCCCGGTGGCCTTCCAGTAGCCCTCGCCGGTGGTGCGGCTCGCCCGCGAGCCGTTGGGGTACTTGCGGTCCATCCGGCTGAAGAAGAACCACTGCTTGTCCCCCGTCCGCAGCGCCGACCTCTCTGCTCCGCCGCCGGCAACACGATTCCACGGTGAGGTCGTGCAGGAGAAGGAATCGACGACGGGGGAGGAGGAGGGGGGGAGTGGTTACCAGGGAGGTGGGAGGGGTGGGACTTGTAGACGTCGACGTCGGCGATGTAGGGGGTGGGGCGGCCGGTGGCGATCCGGCGCTTGAGGAAGTAGAGGACGAGCTCCTCGTCGGTCGGGCTGAAGCGGAACCCCGGCGGCCACCGGAGCGGCGGGTTCTCCATCCCCATCTCGGTCTCCTCCGCCGCCGCCGCCGGAATGGGTTGGTGACTGGCACAGCAACCTCTCGACGAAATGGCGAAATGGCGAGTCAACTC
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| CDS seq | ATGGGGATGGAGAACCCGCCGCTCCGGTGGCCGCCGGGGTTCCGCTTCAGCCCGACCGACGAGGAGCTCGTCCTCTACTTCCTCAAGCGCCGGATCGCCACCGGCCGCCCCACCCCCTACATCGCCGACGTCGACGTCTACAAGTCCCACCCCTCCCACCTCCCTGAGAGGTCGGCGCTGCGGACGGGGGACAAGCAGTGGTTCTTCTTCAGCCGGATGGACCGCAAGTACCCCAACGGCTCGCGGGCGAGCCGCACCACCGGCGAGGGCTACTGGAAGGCCACCGGGAAGGACCGCTCCATCTGCAACGGCGGCGGCGGCGGCACCGCCTCGGGGCGCGCGGTGGGGAGCAAGAAGACCCTCGTGTACCACCACGGCCGCGCCCCGCGCGGGGAGCGCTCGGACTGGGTCATGCACGAGTACACCCTCCTCGCCGACGCGCTCCCGCCCGCCGCGCGCGACCGCGAGGCGTACGCTCTGTACAAGCTGTTCCACAAGAGCGGCGCCGGGCCCAAGAACGGCGAGCAGTACGGCGCCCCCTTCCGGGAGGAGGATTGGCTCGACGACGACGACCACCACCACGACCAGCTTCCTGCTGAGGCGGCTCTTCCGGCTCCAGCCACAACTAGTGGTAGAGCTGCAACAACTGAGGAGCATGCTGACTTTGAGCTTCCGGGTGGGGATCTTGATGTGCTCCTTGCGCAAATTGAAAATGATCAGGATATAATCGAAGCGCAATTGGATTTCTCAACTCATGTTACTTCCCAAGTTCAGATTCAGCATCGTGTTCATCAAGGTTGGCTCAGTGATGATGGCGGAAAATCAGATGTTGCGGATGCTACGACTAGTGGCAGTGCTTTGTTGATGGCAGAGAATACGTGCGCTGAACTTCCAATTGATGGTCTCGAGCAACTTCTGATGCAAATATCGGATGATCAACAGACAGTTGAAATGCTCTCTGGTTTCTCAGCATCCGTTCCCCAATCGCAGCTTCAACATGATTATCATCAGGGTTGTCTTGGTGTTCATAGGGAGGAGGTTGGTGTTGCAGATTCTACCACTGTTAGTAGTGCTGTGGTGACAGAAGAATGTACTGTCCGTGAGCTTCAGGATATTGAAGGGCTTCTGATGCAAATAGAAAATGACCAGGAAAATGCCGAATCACTGCCAGATTTCTCCACACCAGTTCATCTCCATGATTGTCATCAGGCCGCCTTCGGAGATTTTCAAGGAAGCCAGAGGGCTACATTCAACATTGCAAATCTTTCTACTATGGTGCAGGAAAGCCCAAATTTTGATCTGCAAACTGGTCCAAGTAATCAAATTACTGAGTCTATTCTCACCACCGAGCCAATGAATGGAGAAACAAATGCTGTGGAAGAAACAAGTCCTCTGCGCTCTATGTCAGTATTGGGTAGTTATGATAGGCAGGATGGTGATGATGAATTCCTTGAAATCAATGATTTCTTCGACCCAGAAGATTTAGAACAGATTTTGGGCAGTACAAGAAGTCAGAACTTGATTCCTGCTGATGATGGAGTGTTTGATAGTTTGCAATACTCTGATGCTCCAATGTTTCTGCCTGGTTCATTTGACAGAACTGGTGTGGTGGCTGAAAACCATTATGTTGAATTTGGTGCTAGTGGAATTCAGAACCAGGGATTTCAGCATACAACTGAATTATTGGCACATAATCAAGTCGCTCTAAATGTGCGGAACCATATGAAGGACAACCATGTTGTCTTCTCACATTCATCAGATGCTACCATTATTCATACAGTGAATGAGCAACCGCCTAACCGGAGTTCAAATGCTTCACAATCATGGTTCAATGGGGCTCTATCTGCCTTGCTCGATTCTGTTCCTAGCAGTCCAGCTATGGCTGCTGAAAACATAGGTCTTAACAGAACACTGCAACGCATTTCGAGCTTTAGGTCACAACAACCTGCAAGAGAAGAAGTTAGCAGTACTCTTATCAACACCAGAAGAAGAGGCGGTGGGCTAATTTTCATCTCGTTAATGGTTTTACTTGTTGCTATCATGTGGACCTTTAGCAATGGGTCTGCAGTCAAGCTTAGCAAGGGGTTATGGAAGTTTCCCTCTACATAA
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| Protein seq | MGMENPPLRWPPGFRFSPTDEELVLYFLKRRIATGRPTPYIADVDVYKSHPSHLPERSALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSICNGGGGGTASGRAVGSKKTLVYHHGRAPRGERSDWVMHEYTLLADALPPAARDREAYALYKLFHKSGAGPKNGEQYGAPFREEDWLDDDDHHHDQLPAEAALPAPATTSGRAATTEEHADFELPGGDLDVLLAQIENDQDIIEAQLDFSTHVTSQVQIQHRVHQGWLSDDGGKSDVADATTSGSALLMAENTCAELPIDGLEQLLMQISDDQQTVEMLSGFSASVPQSQLQHDYHQGCLGVHREEVGVADSTTVSSAVVTEECTVRELQDIEGLLMQIENDQENAESLPDFSTPVHLHDCHQAAFGDFQGSQRATFNIANLSTMVQESPNFDLQTGPSNQITESILTTEPMNGETNAVEETSPLRSMSVLGSYDRQDGDDEFLEINDFFDPEDLEQILGSTRSQNLIPADDGVFDSLQYSDAPMFLPGSFDRTGVVAENHYVEFGASGIQNQGFQHTTELLAHNQVALNVRNHMKDNHVVFSHSSDATIIHTVNEQPPNRSSNASQSWFNGALSALLDSVPSSPAMAAENIGLNRTLQRISSFRSQQPAREEVSSTLINTRRRGGGLIFISLMVLLVAIMWTFSNGSAVKLSKGLWKFPST |
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| Function | NAC domain-containing protein 17 [UniProtKB/Swiss-Prot:Q9XIC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0493700 | Os09t0493700-01 | Chr09 | 19121959 | 19125032 | - | irgsp1_rep | ||
| CDS seq | ATGGGGATGGAGAACCCGCCGCTCCGGTGGCCGCCGGGGTTCCGCTTCAGCCCGACCGACGAGGAGCTCGTCCTCTACTTCCTCAAGCGCCGGATCGCCACCGGCCGCCCCACCCCCTACATCGCCGACGTCGACGTCTACAAGTCCCACCCCTCCCACCTCCCTGAGAGGTCGGCGCTGCGGACGGGGGACAAGCAGTGGTTCTTCTTCAGCCGGATGGACCGCAAGTACCCCAACGGCTCGCGGGCGAGCCGCACCACCGGCGAGGGCTACTGGAAGGCCACCGGGAAGGACCGCTCCATCTGCAACGGCGGCGGCGGCGGCACCGCCTCGGGGCGCGCGGTGGGGAGCAAGAAGACCCTCGTGTACCACCACGGCCGCGCCCCGCGCGGGGAGCGCTCGGACTGGGTCATGCACGAGTACACCCTCCTCGCCGACGCGCTCCCGCCCGCCGCGCGCGACCGCGAGGCGTACGCTCTGTACAAGCTGTTCCACAAGAGCGGCGCCGGGCCCAAGAACGGCGAGCAGTACGGCGCCCCCTTCCGGGAGGAGGATTGGCTCGACGACGACGACCACCACCACGACCAGCTTCCTGCTGAGGCGGCTCTTCCGGCTCCAGCCACAACTAGTGGTAGAGCTGCAACAACTGAGGAGCATGCTGACTTTGAGCTTCCGGGTGGGGATCTTGATGTGCTCCTTGCGCAAATTGAAAATGATCAGGATATAATCGAAGCGCAATTGGATTTCTCAACTCATGTTACTTCCCAAGTTCAGATTCAGCATCGTGTTCATCAAGGTTGGCTCAGTGATGATGGCGGAAAATCAGATGTTGCGGATGCTACGACTAGTGGCAGTGCTTTGTTGATGGCAGAGAATACGTGCGCTGAACTTCCAATTGATGGTCTCGAGCAACTTCTGATGCAAATATCGGATGATCAACAGACAGTTGAAATGCTCTCTGGTTTCTCAGCATCCGTTCCCCAATCGCAGCTTCAACATGATTATCATCAGGGTTGTCTTGGTGTTCATAGGGAGGAGGTTGGTGTTGCAGATTCTACCACTGTTAGTAGTGCTGTGGTGACAGAAGAATGTACTGTCCGTGAGCTTCAGGATATTGAAGGGCTTCTGATGCAAATAGAAAATGACCAGGAAAATGCCGAATCACTGCCAGATTTCTCCACACCAGTTCATCTCCATGATTGTCATCAGGCCGCCTTCGGAGATTTTCAAGGAAGCCAGAGGGCTACATTCAACATTGCAAATCTTTCTACTATGGTGCAGGAAAGCCCAAATTTTGATCTGCAAACTGGTCCAAGTAATCAAATTACTGAGTCTATTCTCACCACCGAGCCAATGAATGGAGAAACAAATGCTGTGGAAGAAACAAGTCCTCTGCGCTCTATGTCAGTATTGGGTAGTTATGATAGGCAGGATGGTGATGATGAATTCCTTGAAATCAATGATTTCTTCGACCCAGAAGATTTAGAACAGATTTTGGGCAGTACAAGAAGTCAGAACTTGATTCCTGCTGATGATGGAGTGTTTGATAGTTTGCAATACTCTGATGCTCCAATGTTTCTGCCTGGTTCATTTGACAGAACTGGTGTGGTGGCTGAAAACCATTATGTTGAATTTGGTGCTAGTGGAATTCAGAACCAGGGATTTCAGCATACAACTGAATTATTGGCACATAATCAAGTCGCTCTAAATGTGCGGAACCATATGAAGGACAACCATGTTGTCTTCTCACATTCATCAGATGCTACCATTATTCATACAGTGAATGAGCAACCGCCTAACCGGAGTTCAAATGCTTCACAATCATGGTTCAATGGGGCTCTATCTGCCTTGCTCGATTCTGTTCCTAGCAGTCCAGCTATGGCTGCTGAAAACATAGGTCTTAACAGAACACTGCAACGCATTTCGAGCTTTAGGTCACAACAACCTGCAAGAGAAGAAGTTAGCAGTACTCTTATCAACACCAGAAGAAGAGGCGGTGGGCTAATTTTCATCTCGTTAATGGTTTTACTTGTTGCTATCATGTGGACCTTTAGCAATGGGTCTGCAGTCAAGCTTAGCAAGGGGTTATGGAAGTTTCCCTCTACATAA
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| Protein seq | MGMENPPLRWPPGFRFSPTDEELVLYFLKRRIATGRPTPYIADVDVYKSHPSHLPERSALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSICNGGGGGTASGRAVGSKKTLVYHHGRAPRGERSDWVMHEYTLLADALPPAARDREAYALYKLFHKSGAGPKNGEQYGAPFREEDWLDDDDHHHDQLPAEAALPAPATTSGRAATTEEHADFELPGGDLDVLLAQIENDQDIIEAQLDFSTHVTSQVQIQHRVHQGWLSDDGGKSDVADATTSGSALLMAENTCAELPIDGLEQLLMQISDDQQTVEMLSGFSASVPQSQLQHDYHQGCLGVHREEVGVADSTTVSSAVVTEECTVRELQDIEGLLMQIENDQENAESLPDFSTPVHLHDCHQAAFGDFQGSQRATFNIANLSTMVQESPNFDLQTGPSNQITESILTTEPMNGETNAVEETSPLRSMSVLGSYDRQDGDDEFLEINDFFDPEDLEQILGSTRSQNLIPADDGVFDSLQYSDAPMFLPGSFDRTGVVAENHYVEFGASGIQNQGFQHTTELLAHNQVALNVRNHMKDNHVVFSHSSDATIIHTVNEQPPNRSSNASQSWFNGALSALLDSVPSSPAMAAENIGLNRTLQRISSFRSQQPAREEVSSTLINTRRRGGGLIFISLMVLLVAIMWTFSNGSAVKLSKGLWKFPST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0493700 | RBH | 0.626751 | 1.486869 | 2.620016 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32040 | RBH | 0.402689 | 0.950135 | 0.653280 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015150 | RBH | 0.193742 | 17.697662 | 12.184772 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015140 | RBH | 0.123787 | 7.117600 | 1.066693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015360 | RBH | 1.107447 | 9.564051 | 4.241451 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015200 | RBH | 0.034104 | 0.711115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015300 | SBH | 92.353806 | 5.953104 | 4.273045 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0321100 | RBH | 4.1047015 | 19.017847 | 12.0886335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015130 | RBH | 0.149928 | 0.810108 | 0.515127 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0310300 | SBH | 9.716056 | 18.9217645 | 12.704187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015100 | RBH | 0.092211 | 0.191078 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014960 | RBH | 0.321960 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015000 | RBH | 3.029290 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014870 | RBH | 0.561821 | 0.0 | 1.391424 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014970 | RBH | 0.169758 | 9.054452 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015460 | RBH | 0.283384 | 9.964118 | 1.528243 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015260 | RBH | 0.397364 | 18.173275 | 2.418015 |
