Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0434500 | OGI:09047020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:15959434-15962646 | ||||||||
| Gene Symbol | ERF72, OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2 | ||||||||||
| DNA seq | GGCTTCCTCTCCCACTGCGCCCTCCGCGTGAGCGGCAGCAAGTGTTCACTGCGTTCTTCTTCTCGATTTATCTTTCTTGGTTTCTTGATCTGTAGCTTATTAGCGGCCATGTGCGGCGGAGCAATCATCTCCGGGTTCATCCCGCCGTCGGCCGCTGCGGCGGCGGCGGCTGCGGTGGCCAAGAAGCAGCAGGGCAGGAGGGTCACGGCCGACGTGCTGTGGCCGGGGATGCTGCGGAAGGGGAAGGCGGCGGCGGCGGAGGAGGACTTTGAGGCCGACTTCCGCGAGTTCGAGCGTGGCATGAGCGACGACGAGGCGGAGGGGGGCGGCGGCGAGGAGGAGGAGGACGACGACGACGTGGTCGTGGTGGTCCCCCCGCCGGCGGCGGCGAGGTTCGTCGTCCGTGCCGCGGCCAAGGCGGCGCCCCCAACTGCAGGTGAAAAAATAACGCATAAAGCTAGCTCTTTTTCCCCCTTTTCTCGTTAGACGAGCGCAAGATGCGGCCTTTTTTCTGGGTCCGTTTCTTGCGTTCTTCGTGTGATTTGGGGAGAGAATTGGGGTCTCATGGGGTAGCTGCCAAATGGGGCTTCATCAGGTTGCGCCATGGATTTGATCTTGATGCGAACCATGGGACGGCACTGTGTAGTATAGTTTTTTTTTCTTCAATCTAGCGTGTTATTAGTTCTTAACTTCATTAATACCTGTGTACGTAAACTTGCTAGCGAATCTGGTTCTTTTAGATGGATAGCATCTGTAGGTTTGGTGGTTTACGAATTTACACTACGAAATAGGAATTCAACTTTGTCCTAGATTCTACTCTTCTTTCTTTTTCCTGAATTGGAGTAGCAAAGAGAGAGTGATGAGTTTTAGATATTTATTCTTGTGATTTCGCAGTGTCATTATGTGTTTTAATCACTAATATTTGTGTTGGATTAGAGAAAATTTGGCTTTGTAGAGTTGTAGTATGTTCTTGGATTAACCTATGTTTATGGATGCTCTTCTGTCGCTGGATTTACTTGCTTTGTTTCTAATAAGTGATCTAGTAGTGTAATTACGCAAAACTTAATGGCCTTTTTTTTTTCCTTGGCAAAGTTTCATCTGTGCCACCATCTCATCTTGAGATTTGGAGTACTCTTTGAGGCATATTTTTTTCTTGTACTCTTGATTTATCATATTTAGCTGTTAGTTTTCAGAGTATGATGGGTTCTGTAGTATTATCTAAAAATAAAAAAAATGATGGGTTCTTTAGTTGTTCCACTCTTTATATAGATTGTTAGATGCATGTCAAAGCTCCCTTCTTTTTTTTCTTGTTAATTCTAAACAGAAGAAACTTTAGGTGATGCTGTCAAAGCTCCCTTCTTTTTTTTTTCTTGTTAATTCTAAACAGAAGAAACTTTAGGTTGTTAATTTGAACTTTGTTGGTGATCTCGTACTCTCATTCAAGGGATACGAATTTAAAGAATTATTTTATTTTTTTAAAAAAACTAACGAATATAAGGAACTCTAATTTAGTAGTTTGTACAGTTGATTTTGAGCTACATCAAAATATACCCTCAGAGGGACCTCGTTAGTTTTATGCATCTGAGATCTCATTCCTGGATAGAACGTTGCAGGTGAGTAGATGACTACTGTAGACAGTATATGTAGATTATTATCTATTGTTAATCATAGGGCAAGTGAGTAGTTCTACACTTTGACAGTGCTTACACCATATGCTTGCTATATTCATGGACTTTAAGATTTCTTATATATGTCATGATTTATTTGAGAAGTGATCAATTGAACTGATTCATGTCTCAACCTCTCTGTGAACATCCAGTATAACTTCATCTTCATGTTGCTTGAGAGTGTATTGTGTAACTTACAGTTTATAGCTATGATATTTCCTTTATATCCTTCTTCCAAATCTGTTTGTTGAGATGTATACTAACAAATAAGCTTTCGTGTAGATGGGATGTTGACTACAAAGCTTGTCCAACATGATGGACCTACTGCTAGATCAGCAAAGCACAAGAGGAAGAATCAGTACAGGGGGATCCGCCAGCGTCCCTGGGGCAAATGGGCAGCTGAAATCCGAGACCCCAGCAAGGGTGTCCGTGTTTGGCTTGGAACATATAACACTGCTGAGGAGGCAGCTAGGGCATATGACGCTGAAGCCCGCAAGATCCGTGGCAAGAAAGCCAAGGTCAACTTTCCTGATGAACCAGCTGTTGCTCAGAAGCTCTCCCTGAAGCAAAACGCTGCCAAGCAAGAGAAACTAGCTCCACCTCTGAAGACCTGTGGCGATGATGCTTTCTTTCAGCTAAACAGTTCAGACAATGATTTGTTTGCAATGCTTGCAAAGGTGCCTGCAAAGCCGGCAGAGCCTGTTGATCTCATGCCTCCAGTCAAACCTCTTGCTTCCACTGAGACATTCGAGATGAACATGCTCTCTGATACGAGCAGCAACTCATTTGGCTCTTCAGACTTTGGTTGGGAGGATGACACCCTGACCCCAGACTACACTTCAGTCTTCGTTCCTAATGCTGCCATGCCAGCATATGGTGAACCTGCTTACCTGACAGGTGGAGCGCCAAAGAGAATGAGGAACAACTATGGTATCGCCGTGCCCCAGGGAAATGGCATGCCTAATCTCGCACAAAACATGCCCACCTTCGATCCCGAGATGAAGTATTTGCCATTACCTTATGTTGAGAGCAGCTCAGATGAATCAATGGACAACCTTCTGCAAAATGATGCTACACAAGACGGGGCAAGCAACGAGGGCATCTGGAGCCTTGATGAGCTGCTCATGGCAGCTGGTGCCTACTGAGGAGACGAAATGTTCTGGTCAGTGTGGTCTGTCACTAGCAAACCATGTAAGGCACTCCACACTACCTACTATTTTGATTTCTTGTAGATACATTTTCATGTACAGATTACATATGTTGTAAAATGGGATATGGTTTTCTTGTCAGGTTGAATGTGTATGGCCAAGATGAAGAGCTGGTGATGTCTGCTATGTTTTGTAGAGGGATGCTACCAAAGTAATGCTAGAATATTACAAGCTGCTATCAGCTGTACTCTCTATGACAATGTTTATACTATGTTTGCTGTATGGTGTGGTCTATGATTTGAAGTATGTTGGAGACTGATTCAAATAACTGCCTTGGCCATGTGTGTGCTGTAATGTGCTTATTAAGTTATATAGTTGTGCTCATATTGCGTATCTAC
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| CDS seq | ATGTGCGGCGGAGCAATCATCTCCGGGTTCATCCCGCCGTCGGCCGCTGCGGCGGCGGCGGCTGCGGTGGCCAAGAAGCAGCAGGGCAGGAGGGTCACGGCCGACGTGCTGTGGCCGGGGATGCTGCGGAAGGGGAAGGCGGCGGCGGCGGAGGAGGACTTTGAGGCCGACTTCCGCGAGTTCGAGCGTGGCATGAGCGACGACGAGGCGGAGGGGGGCGGCGGCGAGGAGGAGGAGGACGACGACGACGTGGTCGTGGTGGTCCCCCCGCCGGCGGCGGCGAGGTTCGTCGTCCGTGCCGCGGCCAAGGCGGCGCCCCCAACTGCAGATGGGATGTTGACTACAAAGCTTGTCCAACATGATGGACCTACTGCTAGATCAGCAAAGCACAAGAGGAAGAATCAGTACAGGGGGATCCGCCAGCGTCCCTGGGGCAAATGGGCAGCTGAAATCCGAGACCCCAGCAAGGGTGTCCGTGTTTGGCTTGGAACATATAACACTGCTGAGGAGGCAGCTAGGGCATATGACGCTGAAGCCCGCAAGATCCGTGGCAAGAAAGCCAAGGTCAACTTTCCTGATGAACCAGCTGTTGCTCAGAAGCTCTCCCTGAAGCAAAACGCTGCCAAGCAAGAGAAACTAGCTCCACCTCTGAAGACCTGTGGCGATGATGCTTTCTTTCAGCTAAACAGTTCAGACAATGATTTGTTTGCAATGCTTGCAAAGGTGCCTGCAAAGCCGGCAGAGCCTGTTGATCTCATGCCTCCAGTCAAACCTCTTGCTTCCACTGAGACATTCGAGATGAACATGCTCTCTGATACGAGCAGCAACTCATTTGGCTCTTCAGACTTTGGTTGGGAGGATGACACCCTGACCCCAGACTACACTTCAGTCTTCGTTCCTAATGCTGCCATGCCAGCATATGGTGAACCTGCTTACCTGACAGGTGGAGCGCCAAAGAGAATGAGGAACAACTATGGTATCGCCGTGCCCCAGGGAAATGGCATGCCTAATCTCGCACAAAACATGCCCACCTTCGATCCCGAGATGAAGTATTTGCCATTACCTTATGTTGAGAGCAGCTCAGATGAATCAATGGACAACCTTCTGCAAAATGATGCTACACAAGACGGGGCAAGCAACGAGGGCATCTGGAGCCTTGATGAGCTGCTCATGGCAGCTGGTGCCTACTGA
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| Protein seq | MCGGAIISGFIPPSAAAAAAAAVAKKQQGRRVTADVLWPGMLRKGKAAAAEEDFEADFREFERGMSDDEAEGGGGEEEEDDDDVVVVVPPPAAARFVVRAAAKAAPPTADGMLTTKLVQHDGPTARSAKHKRKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAKQEKLAPPLKTCGDDAFFQLNSSDNDLFAMLAKVPAKPAEPVDLMPPVKPLASTETFEMNMLSDTSSNSFGSSDFGWEDDTLTPDYTSVFVPNAAMPAYGEPAYLTGGAPKRMRNNYGIAVPQGNGMPNLAQNMPTFDPEMKYLPLPYVESSSDESMDNLLQNDATQDGASNEGIWSLDELLMAAGAY |
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| Function | Ethylene-responsive transcription factor 1 [UniProtKB/Swiss-Prot:Q6K7E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0434500 | Os09t0434500-01 | Chr09 | 15959434 | 15962646 | + | irgsp1_rep | ||
| CDS seq | ATGTGCGGCGGAGCAATCATCTCCGGGTTCATCCCGCCGTCGGCCGCTGCGGCGGCGGCGGCTGCGGTGGCCAAGAAGCAGCAGGGCAGGAGGGTCACGGCCGACGTGCTGTGGCCGGGGATGCTGCGGAAGGGGAAGGCGGCGGCGGCGGAGGAGGACTTTGAGGCCGACTTCCGCGAGTTCGAGCGTGGCATGAGCGACGACGAGGCGGAGGGGGGCGGCGGCGAGGAGGAGGAGGACGACGACGACGTGGTCGTGGTGGTCCCCCCGCCGGCGGCGGCGAGGTTCGTCGTCCGTGCCGCGGCCAAGGCGGCGCCCCCAACTGCAGATGGGATGTTGACTACAAAGCTTGTCCAACATGATGGACCTACTGCTAGATCAGCAAAGCACAAGAGGAAGAATCAGTACAGGGGGATCCGCCAGCGTCCCTGGGGCAAATGGGCAGCTGAAATCCGAGACCCCAGCAAGGGTGTCCGTGTTTGGCTTGGAACATATAACACTGCTGAGGAGGCAGCTAGGGCATATGACGCTGAAGCCCGCAAGATCCGTGGCAAGAAAGCCAAGGTCAACTTTCCTGATGAACCAGCTGTTGCTCAGAAGCTCTCCCTGAAGCAAAACGCTGCCAAGCAAGAGAAACTAGCTCCACCTCTGAAGACCTGTGGCGATGATGCTTTCTTTCAGCTAAACAGTTCAGACAATGATTTGTTTGCAATGCTTGCAAAGGTGCCTGCAAAGCCGGCAGAGCCTGTTGATCTCATGCCTCCAGTCAAACCTCTTGCTTCCACTGAGACATTCGAGATGAACATGCTCTCTGATACGAGCAGCAACTCATTTGGCTCTTCAGACTTTGGTTGGGAGGATGACACCCTGACCCCAGACTACACTTCAGTCTTCGTTCCTAATGCTGCCATGCCAGCATATGGTGAACCTGCTTACCTGACAGGTGGAGCGCCAAAGAGAATGAGGAACAACTATGGTATCGCCGTGCCCCAGGGAAATGGCATGCCTAATCTCGCACAAAACATGCCCACCTTCGATCCCGAGATGAAGTATTTGCCATTACCTTATGTTGAGAGCAGCTCAGATGAATCAATGGACAACCTTCTGCAAAATGATGCTACACAAGACGGGGCAAGCAACGAGGGCATCTGGAGCCTTGATGAGCTGCTCATGGCAGCTGGTGCCTACTGA
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| Protein seq | MCGGAIISGFIPPSAAAAAAAAVAKKQQGRRVTADVLWPGMLRKGKAAAAEEDFEADFREFERGMSDDEAEGGGGEEEEDDDDVVVVVPPPAAARFVVRAAAKAAPPTADGMLTTKLVQHDGPTARSAKHKRKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAKQEKLAPPLKTCGDDAFFQLNSSDNDLFAMLAKVPAKPAEPVDLMPPVKPLASTETFEMNMLSDTSSNSFGSSDFGWEDDTLTPDYTSVFVPNAAMPAYGEPAYLTGGAPKRMRNNYGIAVPQGNGMPNLAQNMPTFDPEMKYLPLPYVESSSDESMDNLLQNDATQDGASNEGIWSLDELLMAAGAY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0434500 | RBH | 34.146652 | 29.531757 | 140.687592 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26420 | RBH | 18.059254 | 15.378909 | 27.751425 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011390 | RBH | 2.902599 | 624.851746 | 135.521957 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011330 | RBH | 9.465077 | 79.710655 | 70.079201 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0011590 | RBH | 12.342490 | 323.626953 | 213.810089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011360 | RBH | 0.843508 | 4.287384 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011550 | RBH | 78.117149 | 158.808228 | 374.986969 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0265700 | RBH | 74.4033165 | 161.1583405 | 104.9691315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011510 | RBH | 1.835027 | 13.039123 | 19.433754 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0255600 | RBH | 85.807949 | 58.874733 | 117.0688055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011470 | RBH | 3.727890 | 3.689823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011270 | RBH | 9.097898 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011360 | RBH | 52.895432 | 252.886276 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011160 | RBH | 9.106923 | 0.0 | 26.730230 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011260 | RBH | 3.903543 | 88.407745 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011770 | RBH | 1.626892 | 14.537802 | 44.938015 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011570 | RBH | 6.276882 | 156.359833 | 145.160995 |
