Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0423300 | OGI:09045310 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:15328754-15332301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCACCACCACCGGTCACCCCTGCAGGCCTGCAGCTGCTCCAACGGCTTTCCCCCTCCGTCACCCACTCCCTATCCGCCTATCCCATCCCAAAACCTCCTCTCCCCTCCCCCCCCGGCAGCCGCCGCCTCCAAAGTTCTCTGCTTTCGTCACCGCCAGCCTCCCTCCAAGGTAAACCACAGCACCGAATGTGAATCTTGCAGTTCGCGAGCTGACCAGCTGATCTTTTTGTAAAGAATCGTTTGGTCCTGCACCTCGCTGATCGCGGTCTGTTTCGCTGTTTTGCTATGATGCGCAGGTATTGTTCGATCCGGAGTAGTGAGTCTATGCCCTTGTCCGGATCCGAATGGCTGCCCTGCGGATCTGCACGCCGGGTGGTGGTGCTCCGGAGGCCAGAAGAGGCAGTCTTGCTGCTGCCGGGAGCGCGGTTCAGCATGGACCGGATTTGATCGGGTTCAGTTCTTGGGTGCTGCCAATCAGCGCCGGATATGCCGTGGACCGGAGGCACGCAGCAGCTGGTGGAGTTGCCGCATGCCATGGGCTCTCGTGTGCTGACAGTGGGAGGAGGAAGAATCATCCCAGGGCAAGTCTGGTGAATGGTGTGGTTTCATCTCTGGAGGACAGTAGCGGCGGGGAGCCTGCGCTATGCGTATCTGATTCACCTGAAGACGCTAGCTCCAGTGGAAAAGTGTTGTCCGATTTGCGTCGGGACATGGTGGATGGTATTAGTGGTATTCCAAGAATTTCTGCGGGAAAGAAGAAGGGGATGAAGTTCAGGAGAAGAGGGCAGGGTGGAAATAGATTGACACGGCGTAGTGCTCCGAGGCGTGCCAGTGGAAAGAGTGGGCAAGATCAGAGGATTTTGTTGAGCGAGGATGATATTGCTGCAATTTTGTCCAGTGTTACCCATGAATCTAGCATCGAGGAGTGCAATTCTGTTCTCATCTGTCTCGAGAAGCATAGTGATAAGACAGCTCTTGGTTTCTTTGAGTGGATGAAGGCTAATGGAAAGCTGAAGGGAAATGCTGAGGCGTATCACCTAGCGCTTCAAGCGATCGCCTGGAAGGAGGATTGGGAAGCAGCTGGACAGTTGCTTCATGAAATGGTTGCTGATTCGGGTTGCGCTCTGGATGCTCAAGCATTTAATGGGCTTATATATGTTTGTGCCAAACGGAGGCTTGTTGACTGGGGAACAAAGTGGCTTCATATGATGCTTGAAAGAGATGTGCAGCCGAATGTGTCTACAGTTGGTATGCTTATGGGACTTTACCAGAGGATTGGGAACCTTCCAGAAGCTGAATTCACTTTTGCTAAAATGAGGAAATGTGGCATTAAGTGTGTTAATGCCTACTCAGCTATGGTTACTTTGTATACACGGTTAGGCCATTTTGCCAAATCTGAGGAGGTTATTACTCTAATGAATAATGATGAAGTAGTTCCGAACATGGAAAATTGGTTAGTGCGGCTAAATGCTTATTGTCAACAAGGCAAAATGGAAGAAGCTGAATTGGTATTGAAGTCCTTGGTAGATGAAGGAATTGCTCTGAATGTTGTGGCATACAATACGGTAATTACAGGTTATGGAAAAGTTTCTGACATGCAGAAGGCAATGGAAGTGTTTGATAGGCTTAAGAGTGCAGGTTTAGCTCCTGATGAAACAACCTATAGATCAATGATTGAAGGTTTTGGTAGAGCAGACAAATACAAACAGGCAATTTTGTACTACAGGAAACTCCGAAACTCTGGATTTAAACCAAATGCATCCAACTTTTACACAATGATTAACTTGCTAGCAAGACATGATGACAGTGAAGGTGCAACAGAGATTCTCGAGGACATGCGGGCAGCAGGCTGCCAGTGTTCATCGATTGTCACTGTTCTTGTCCGAGCATATGGGTCAGTAGGAAGGATGCATAAAGTTCTTCAGATTCTAAAAGCATGCTTCTATAAGAAGATTTTGTTTGATGCCACCTCATGCTCTATTTTAGTAACAGGATTCGTTCAAAATTCTCTAGTAGAAGAAGCTATGCGTGTTTTGCGCGAAAAGAAGTGGAAAGATTCTGATTTTGAAGACAATTTATATCATATCTTGATCTGTTCTTGCAAAGAGGCTGGCTGTTGTGATGATGCTGTCAGGATATATAATCAGATGCCTAAGTCGGCAACACATCCAAATCTGCGTATTTATTGCAGTATGATTGATGTTTTCAGCATCATGGAGAGATTCACTGATGCTGAAGCTTTATATCTTGAACTGAAAGCATCATCCTGTGTTCTTGACATGATTGCCTACAGCGTAATTGTGAGGATGTATACTAAAGCTGGGCGACCAGAAGATGCCTGTTTGGTTTTGGAAGACATGGAGAAACAAAAGGAAATAGTTCCTGATAAGTACCTTTTCCTTGACATGCTTCGGACTTACCAAAAATGTGGCCTACTCGAGAAATTATCTGATACATATTACTGGATACTAAAGAGTCAAGTTGAATTGGATGAAGCCATGTACAACTGCATTATAAACTGTTGTGGGCGGGCAATACCGGTTGATGAGCTCTCAAGAATTTTTGATGAAATGATTCAACAAGGGCACTTGGCCAACACTGTTACCCTCAATGTATTGCTAGACATATATGGAAAAGCCGGGCTTTTTAATAAGGCAGAAAAGGTATTTCTCATGGCTCGCAAGCAGGGTATGGCAGATATCATATCATACAATACCATTATTGCCGCGCATGCAAAAAATGGGGATTTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCCTGTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGAGGAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATACTTACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGTTCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATAAAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGGATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAGGAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGCTGCAACTCGAACATGATGTGCCTAAGAATTCAGAGTTTTGGTTGCATGCAAATTCTGGCATCCGCACACGTTTATATTTCATCTTTCAGTAGAGTACATACATACATGTGAGTGACATTGTACAGAGAACTATTTCTGATTGTTCTACACATCCTATGGGTACCGGAGATTCAGAAAAACCTCCTACCTTTCCATTCTCTTACAAGATGAAACTCAATCAGTGGATAGCAAGATAGGAACTTTTATCATACCAATCATACAATTGTAATTTTTTTACCAGAACTGGTTTGAACTTCTGATAATAATGATCAAAGATTCATTGAGAAACCC
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| CDS seq | ATGGCTGCCCTGCGGATCTGCACGCCGGGTGGTGGTGCTCCGGAGGCCAGAAGAGGCAGTCTTGCTGCTGCCGGGAGCGCGGTTCAGCATGGACCGGATTTGATCGGGTTCAGTTCTTGGGTGCTGCCAATCAGCGCCGGATATGCCGTGGACCGGAGGCACGCAGCAGCTGGTGGAGTTGCCGCATGCCATGGGCTCTCGTGTGCTGACAGTGGGAGGAGGAAGAATCATCCCAGGGCAAGTCTGGTGAATGGTGTGGTTTCATCTCTGGAGGACAGTAGCGGCGGGGAGCCTGCGCTATGCGTATCTGATTCACCTGAAGACGCTAGCTCCAGTGGAAAAGTGTTGTCCGATTTGCGTCGGGACATGGTGGATGGTATTAGTGGTATTCCAAGAATTTCTGCGGGAAAGAAGAAGGGGATGAAGTTCAGGAGAAGAGGGCAGGGTGGAAATAGATTGACACGGCGTAGTGCTCCGAGGCGTGCCAGTGGAAAGAGTGGGCAAGATCAGAGGATTTTGTTGAGCGAGGATGATATTGCTGCAATTTTGTCCAGTGTTACCCATGAATCTAGCATCGAGGAGTGCAATTCTGTTCTCATCTGTCTCGAGAAGCATAGTGATAAGACAGCTCTTGGTTTCTTTGAGTGGATGAAGGCTAATGGAAAGCTGAAGGGAAATGCTGAGGCGTATCACCTAGCGCTTCAAGCGATCGCCTGGAAGGAGGATTGGGAAGCAGCTGGACAGTTGCTTCATGAAATGGTTGCTGATTCGGGTTGCGCTCTGGATGCTCAAGCATTTAATGGGCTTATATATGTTTGTGCCAAACGGAGGCTTGTTGACTGGGGAACAAAGTGGCTTCATATGATGCTTGAAAGAGATGTGCAGCCGAATGTGTCTACAGTTGGTATGCTTATGGGACTTTACCAGAGGATTGGGAACCTTCCAGAAGCTGAATTCACTTTTGCTAAAATGAGGAAATGTGGCATTAAGTGTGTTAATGCCTACTCAGCTATGGTTACTTTGTATACACGGTTAGGCCATTTTGCCAAATCTGAGGAGGTTATTACTCTAATGAATAATGATGAAGTAGTTCCGAACATGGAAAATTGGTTAGTGCGGCTAAATGCTTATTGTCAACAAGGCAAAATGGAAGAAGCTGAATTGGTATTGAAGTCCTTGGTAGATGAAGGAATTGCTCTGAATGTTGTGGCATACAATACGGTAATTACAGGTTATGGAAAAGTTTCTGACATGCAGAAGGCAATGGAAGTGTTTGATAGGCTTAAGAGTGCAGGTTTAGCTCCTGATGAAACAACCTATAGATCAATGATTGAAGGTTTTGGTAGAGCAGACAAATACAAACAGGCAATTTTGTACTACAGGAAACTCCGAAACTCTGGATTTAAACCAAATGCATCCAACTTTTACACAATGATTAACTTGCTAGCAAGACATGATGACAGTGAAGGTGCAACAGAGATTCTCGAGGACATGCGGGCAGCAGGCTGCCAGTGTTCATCGATTGTCACTGTTCTTGTCCGAGCATATGGGTCAGTAGGAAGGATGCATAAAGTTCTTCAGATTCTAAAAGCATGCTTCTATAAGAAGATTTTGTTTGATGCCACCTCATGCTCTATTTTAGTAACAGGATTCGTTCAAAATTCTCTAGTAGAAGAAGCTATGCGTGTTTTGCGCGAAAAGAAGTGGAAAGATTCTGATTTTGAAGACAATTTATATCATATCTTGATCTGTTCTTGCAAAGAGGCTGGCTGTTGTGATGATGCTGTCAGGATATATAATCAGATGCCTAAGTCGGCAACACATCCAAATCTGCGTATTTATTGCAGTATGATTGATGTTTTCAGCATCATGGAGAGATTCACTGATGCTGAAGCTTTATATCTTGAACTGAAAGCATCATCCTGTGTTCTTGACATGATTGCCTACAGCGTAATTGTGAGGATGTATACTAAAGCTGGGCGACCAGAAGATGCCTGTTTGGTTTTGGAAGACATGGAGAAACAAAAGGAAATAGTTCCTGATAAGTACCTTTTCCTTGACATGCTTCGGACTTACCAAAAATGTGGCCTACTCGAGAAATTATCTGATACATATTACTGGATACTAAAGAGTCAAGTTGAATTGGATGAAGCCATGTACAACTGCATTATAAACTGTTGTGGGCGGGCAATACCGGTTGATGAGCTCTCAAGAATTTTTGATGAAATGATTCAACAAGGGCACTTGGCCAACACTGTTACCCTCAATGTATTGCTAGACATATATGGAAAAGCCGGGCTTTTTAATAAGGCAGAAAAGGTATTTCTCATGGCTCGCAAGCAGGGTATGGCAGATATCATATCATACAATACCATTATTGCCGCGCATGCAAAAAATGGGGATTTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCCTGTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGAGGAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATACTTACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGTTCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATAAAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGGATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAGGAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGCTGCAACTCGAACATGA
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| Protein seq | MAALRICTPGGGAPEARRGSLAAAGSAVQHGPDLIGFSSWVLPISAGYAVDRRHAAAGGVAACHGLSCADSGRRKNHPRASLVNGVVSSLEDSSGGEPALCVSDSPEDASSSGKVLSDLRRDMVDGISGIPRISAGKKKGMKFRRRGQGGNRLTRRSAPRRASGKSGQDQRILLSEDDIAAILSSVTHESSIEECNSVLICLEKHSDKTALGFFEWMKANGKLKGNAEAYHLALQAIAWKEDWEAAGQLLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHMMLERDVQPNVSTVGMLMGLYQRIGNLPEAEFTFAKMRKCGIKCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATEILEDMRAAGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKILFDATSCSILVTGFVQNSLVEEAMRVLREKKWKDSDFEDNLYHILICSCKEAGCCDDAVRIYNQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKASSCVLDMIAYSVIVRMYTKAGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMARKQGMADIISYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVKWSLWMKQTGVAATRT |
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| Function | Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [UniProtKB/Swiss-Prot:O65567] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0423300 | Os09t0423300-01 | Chr09 | 15328754 | 15332301 | + | irgsp1_rep | ||
| CDS seq | ATGGCTGCCCTGCGGATCTGCACGCCGGGTGGTGGTGCTCCGGAGGCCAGAAGAGGCAGTCTTGCTGCTGCCGGGAGCGCGGTTCAGCATGGACCGGATTTGATCGGGTTCAGTTCTTGGGTGCTGCCAATCAGCGCCGGATATGCCGTGGACCGGAGGCACGCAGCAGCTGGTGGAGTTGCCGCATGCCATGGGCTCTCGTGTGCTGACAGTGGGAGGAGGAAGAATCATCCCAGGGCAAGTCTGGTGAATGGTGTGGTTTCATCTCTGGAGGACAGTAGCGGCGGGGAGCCTGCGCTATGCGTATCTGATTCACCTGAAGACGCTAGCTCCAGTGGAAAAGTGTTGTCCGATTTGCGTCGGGACATGGTGGATGGTATTAGTGGTATTCCAAGAATTTCTGCGGGAAAGAAGAAGGGGATGAAGTTCAGGAGAAGAGGGCAGGGTGGAAATAGATTGACACGGCGTAGTGCTCCGAGGCGTGCCAGTGGAAAGAGTGGGCAAGATCAGAGGATTTTGTTGAGCGAGGATGATATTGCTGCAATTTTGTCCAGTGTTACCCATGAATCTAGCATCGAGGAGTGCAATTCTGTTCTCATCTGTCTCGAGAAGCATAGTGATAAGACAGCTCTTGGTTTCTTTGAGTGGATGAAGGCTAATGGAAAGCTGAAGGGAAATGCTGAGGCGTATCACCTAGCGCTTCAAGCGATCGCCTGGAAGGAGGATTGGGAAGCAGCTGGACAGTTGCTTCATGAAATGGTTGCTGATTCGGGTTGCGCTCTGGATGCTCAAGCATTTAATGGGCTTATATATGTTTGTGCCAAACGGAGGCTTGTTGACTGGGGAACAAAGTGGCTTCATATGATGCTTGAAAGAGATGTGCAGCCGAATGTGTCTACAGTTGGTATGCTTATGGGACTTTACCAGAGGATTGGGAACCTTCCAGAAGCTGAATTCACTTTTGCTAAAATGAGGAAATGTGGCATTAAGTGTGTTAATGCCTACTCAGCTATGGTTACTTTGTATACACGGTTAGGCCATTTTGCCAAATCTGAGGAGGTTATTACTCTAATGAATAATGATGAAGTAGTTCCGAACATGGAAAATTGGTTAGTGCGGCTAAATGCTTATTGTCAACAAGGCAAAATGGAAGAAGCTGAATTGGTATTGAAGTCCTTGGTAGATGAAGGAATTGCTCTGAATGTTGTGGCATACAATACGGTAATTACAGGTTATGGAAAAGTTTCTGACATGCAGAAGGCAATGGAAGTGTTTGATAGGCTTAAGAGTGCAGGTTTAGCTCCTGATGAAACAACCTATAGATCAATGATTGAAGGTTTTGGTAGAGCAGACAAATACAAACAGGCAATTTTGTACTACAGGAAACTCCGAAACTCTGGATTTAAACCAAATGCATCCAACTTTTACACAATGATTAACTTGCTAGCAAGACATGATGACAGTGAAGGTGCAACAGAGATTCTCGAGGACATGCGGGCAGCAGGCTGCCAGTGTTCATCGATTGTCACTGTTCTTGTCCGAGCATATGGGTCAGTAGGAAGGATGCATAAAGTTCTTCAGATTCTAAAAGCATGCTTCTATAAGAAGATTTTGTTTGATGCCACCTCATGCTCTATTTTAGTAACAGGATTCGTTCAAAATTCTCTAGTAGAAGAAGCTATGCGTGTTTTGCGCGAAAAGAAGTGGAAAGATTCTGATTTTGAAGACAATTTATATCATATCTTGATCTGTTCTTGCAAAGAGGCTGGCTGTTGTGATGATGCTGTCAGGATATATAATCAGATGCCTAAGTCGGCAACACATCCAAATCTGCGTATTTATTGCAGTATGATTGATGTTTTCAGCATCATGGAGAGATTCACTGATGCTGAAGCTTTATATCTTGAACTGAAAGCATCATCCTGTGTTCTTGACATGATTGCCTACAGCGTAATTGTGAGGATGTATACTAAAGCTGGGCGACCAGAAGATGCCTGTTTGGTTTTGGAAGACATGGAGAAACAAAAGGAAATAGTTCCTGATAAGTACCTTTTCCTTGACATGCTTCGGACTTACCAAAAATGTGGCCTACTCGAGAAATTATCTGATACATATTACTGGATACTAAAGAGTCAAGTTGAATTGGATGAAGCCATGTACAACTGCATTATAAACTGTTGTGGGCGGGCAATACCGGTTGATGAGCTCTCAAGAATTTTTGATGAAATGATTCAACAAGGGCACTTGGCCAACACTGTTACCCTCAATGTATTGCTAGACATATATGGAAAAGCCGGGCTTTTTAATAAGGCAGAAAAGGTATTTCTCATGGCTCGCAAGCAGGGTATGGCAGATATCATATCATACAATACCATTATTGCCGCGCATGCAAAAAATGGGGATTTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCCTGTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGAGGAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATACTTACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGTTCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATAAAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGGATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAGGAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGCTGCAACTCGAACATGA
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| Protein seq | MAALRICTPGGGAPEARRGSLAAAGSAVQHGPDLIGFSSWVLPISAGYAVDRRHAAAGGVAACHGLSCADSGRRKNHPRASLVNGVVSSLEDSSGGEPALCVSDSPEDASSSGKVLSDLRRDMVDGISGIPRISAGKKKGMKFRRRGQGGNRLTRRSAPRRASGKSGQDQRILLSEDDIAAILSSVTHESSIEECNSVLICLEKHSDKTALGFFEWMKANGKLKGNAEAYHLALQAIAWKEDWEAAGQLLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHMMLERDVQPNVSTVGMLMGLYQRIGNLPEAEFTFAKMRKCGIKCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATEILEDMRAAGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKILFDATSCSILVTGFVQNSLVEEAMRVLREKKWKDSDFEDNLYHILICSCKEAGCCDDAVRIYNQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKASSCVLDMIAYSVIVRMYTKAGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMARKQGMADIISYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVKWSLWMKQTGVAATRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0423300 | Os09t0423300-02 | Chr09 | 15329632 | 15332143 | + | irgsp1_rep | ||
| CDS seq | ATTGCTGCAATTTTGTCCAGTGTTACCCATGAATCTAGCATCGAGGAGTGCAATTCTGTTCTCATCTGTCTCGAGAAGCATAGTGATAAGACAGCTCTTGGTTTCTTTGAGTGGATGAAGGCTAATGGAAAGCTGAAGGGAAATGCTGAGGCGTATCACCTAGCGCTTCAAGCGATCGCCTGGAAGGAGGATTGGGAAGCAGCTGGACAGTTGCTTCATGAAATGGTTGCTGATTCGGGTTGCGCTCTGGATGCTCAAGCATTTAATGGGCTTATATATGTTTGTGCCAAACGGAGGCTTGTTGACTGGGGAACAAAGTGGCTTCATATGATGCTTGAAAGAGATGTGCAGCCGAATGTGTCTACAGTTGGTATGCTTATGGGACTTTACCAGAGGATTGGGAACCTTCCAGAAGCTGAATTCACTTTTGCTAAAATGAGGAAATGTGGCATTAAGTGTGTTAATGCCTACTCAGCTATGGTTACTTTGTATACACGGTTAGGCCATTTTGCCAAATCTGAGGAGGTTATTACTCTAATGAATAATGATGAAGTAGTTCCGAACATGGAAAATTGGTTAGTGCGGCTAAATGCTTATTGTCAACAAGGCAAAATGGAAGAAGCTGAATTGGTATTGAAGTCCTTGGTAGATGAAGGAATTGCTCTGAATGTTGTGGCATACAATACGGTAATTACAGGTTATGGAAAAGTTTCTGACATGCAGAAGGCAATGGAAGTGTTTGATAGGCTTAAGAGTGCAGGTTTAGCTCCTGATGAAACAACCTATAGATCAATGATTGAAGGTTTTGGTAGAGCAGACAAATACAAACAGGCAATTTTGTACTACAGGAAACTCCGAAACTCTGGATTTAAACCAAATGCATCCAACTTTTACACAATGATTAACTTGCTAGCAAGACATGATGACAGTGAAGGTGCAACAGAGATTCTCGAGGACATGCGGGCAGCAGGCTGCCAGTGTTCATCGATTGTCACTGTTCTTGTCCGAGCATATGGGTCAGTAGGAAGGATGCATAAAGTTCTTCAGATTCTAAAAGCATGCTTCTATAAGAAGATTTTGTTTGATGCCACCTCATGCTCTATTTTAGTAACAGGATTCGTTCAAAATTCTCTAGTAGAAGAAGCTATGCGTGTTTTGCGCGAAAAGAAGTGGAAAGATTCTGATTTTGAAGACAATTTATATCATATCTTGATCTGTTCTTGCAAAGAGGCTGGCTGTTGTGATGATGCTGTCAGGATATATAATCAGATGCCTAAGTCGGCAACACATCCAAATCTGCGTATTTATTGCAGTATGATTGATGTTTTCAGCATCATGGAGAGATTCACTGATGCTGAAGCTTTATATCTTGAACTGAAAGCATCATCCTGTGTTCTTGACATGATTGCCTACAGCGTAATTGTGAGGATGTATACTAAAGCTGGGCGACCAGAAGATGCCTGTTTGGTTTTGGAAGACATGGAGAAACAAAAGGAAATAGTTCCTGATAAGTACCTTTTCCTTGACATGCTTCGGACTTACCAAAAATGTGGCCTACTCGAGAAATTATCTGATACATATTACTGGATACTAAAGAGTCAAGTTGAATTGGATGAAGCCATGTACAACTGCATTATAAACTGTTGTGGGCGGGCAATACCGGTTGATGAGCTCTCAAGAATTTTTGATGAAATGATTCAACAAGGGCACTTGGCCAACACTGTTACCCTCAATGTATTGCTAGACATATATGGAAAAGCCGGGCTTTTTAATAAGGCAGAAAAGGTATTTCTCATGGCTCGCAAGCAGGGTATGGCAGATATCATATCATACAATACCATTATTGCCGCGCATGCAAAAAATGGGGATTTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCCTGTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGAGGAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATACTTACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGTTCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATAAAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGGATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAGGAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGCTGCAACTCGAACATGA
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| Protein seq | IAAILSSVTHESSIEECNSVLICLEKHSDKTALGFFEWMKANGKLKGNAEAYHLALQAIAWKEDWEAAGQLLHEMVADSGCALDAQAFNGLIYVCAKRRLVDWGTKWLHMMLERDVQPNVSTVGMLMGLYQRIGNLPEAEFTFAKMRKCGIKCVNAYSAMVTLYTRLGHFAKSEEVITLMNNDEVVPNMENWLVRLNAYCQQGKMEEAELVLKSLVDEGIALNVVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYRKLRNSGFKPNASNFYTMINLLARHDDSEGATEILEDMRAAGCQCSSIVTVLVRAYGSVGRMHKVLQILKACFYKKILFDATSCSILVTGFVQNSLVEEAMRVLREKKWKDSDFEDNLYHILICSCKEAGCCDDAVRIYNQMPKSATHPNLRIYCSMIDVFSIMERFTDAEALYLELKASSCVLDMIAYSVIVRMYTKAGRPEDACLVLEDMEKQKEIVPDKYLFLDMLRTYQKCGLLEKLSDTYYWILKSQVELDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNKAEKVFLMARKQGMADIISYNTIIAAHAKNGDFRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVKWSLWMKQTGVAATRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0423300 | Os09t0423300-03 | Chr09 | 15331502 | 15332301 | + | irgsp1_rep | ||
| CDS seq | TTTCGTAGCATGATTTATTTCGTCCAGAGGATGCAAGAGGCAGGGTTCCCTGTTTCTCTGGAGGCGTACAACTGTATGCTGGATGCTTACGGTAAGGCAGGACAGTTGGAGGAGTTTGCTGCTGTTCTGCAAAAAATGGAGAGAGCAGGATGCGAGTTTGATCACTATACTTACAACATTATGATCAATATATACGGGAGAAAGGGTTGGATCGAAGGAGTTGCAAACGTTCTTGCGGAGCTAAAGAGCCGTGGTGGCGAGCCAGATCTGTACAGTTACAACACCTTGATAAAAGCATACGGGATAGCAGGAATGCCTGAAGATGCTGTTAAACTGATGCAGGAGATGAGGATTAAAGGCATTGCCGCTGACCGAGTAACCTATACTAACCTTATAGCTGCTCTACAGAGGAATGAGAATTTCCTGGAAGCAGTTAAGTGGTCTCTCTGGATGAAGCAAACTGGAGTTGCTGCAACTCGAACATGA
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| Protein seq | FRSMIYFVQRMQEAGFPVSLEAYNCMLDAYGKAGQLEEFAAVLQKMERAGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRIKGIAADRVTYTNLIAALQRNENFLEAVKWSLWMKQTGVAATRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0423300 | RBH | 6.491241 | 7.632009 | 3.863743 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25550 | RBH | 3.266283 | 3.953966 | 0.689276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0185700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010750 | RBH | 0.996123 | 3.583646 | 2.086257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010710 | RBH | 0.981189 | 0.335751 | 2.082183 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0011000 | RBH | 2.425703 | 2.592037 | 4.175925 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010760 | RBH | 0.410569 | 0.166720 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010830 | RBH | 27.795591 | 1.634995 | 12.989525 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0256500 | RBH | 15.5165435 | 5.338563 | 4.770191 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010830 | RBH | 1.054771 | 0.000000 | 0.686094 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0244400 | RBH | 11.055312 | 3.1678995 | 11.8884525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010790 | RBH | 0.942547 | 0.283133 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010580 | RBH | 2.080405 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010740 | RBH | 19.456566 | 9.804395 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010530 | RBH | 2.733412 | 0.0 | 1.243242 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010580 | RBH | 1.142727 | 1.751334 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011070 | RBH | 0.881624 | 0.0 | 1.639586 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010860 | RBH | 4.094231 | 1.250381 | 6.729005 |
