Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0411600 | OGI:09043300 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:14603951-14607125 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCTAGTACTCTCTGTTCACAAAAAAATGTTGTTTTGAACATACAATGTTAACCACTATATTCTATAACAATATATCTATTACAACAAACAATTATCATAATATTATGAAAGTGCTTTCCGTAATGAATCTCTACATACATTTTTTATGATCCAATCTAAACATATATAAAGAGATATGCATGTTTAAAGTTTCAAATGTTTGACTTAAGGCATGCCAAAACAATATTACCTCTATCCCAAATATAAGGCATTTTGCCCATGCATGTAGTTGTACGAGCAAAATCCCTTATATTATGAGACGGATGTAGTAAGTTTTCGTGACCTGATGGATAATTGTTGTTACATTATCTGACTGATGCAAATCATGCCATTGTGACAAGCCTGTGTTTTGTGCAGTGTTTATCAAGAGCACTTCGGAATGAGAACCCGCGATTACTAATGGCAGCATCAGCATTGCTCCTACCATTTCAGCCTTTGATGGTTTCAGTTGTTCACACTGGAATGATGGAGGCAAGTAATATTAATGGCATGGCATATTGGCTAAATAAAACCAATCATCATTTCAACGATCACTAGGCATATTTGCTGCATAAATCTAGACTTCTCTAAAGATCTAGCATTTTCTATGTGCCAGGTTTCCTTTGCAAAAAGAGCATCAATTGAACCAGAGCTCAGAATGGCACATAACCTGCACAAGATGTCGTCTCTGTTAGGAGGCGCGCTGTTCATCGCTGATGATTGCTTCCCAGAGACTCCCTATATCCATGCTGCATGGCATCTCGCCGCTGCGCTTGGCATCGGTACATGTAACAAGCTTCTTGAGTGATATGAGGAACTGCTAGTATCAAAAGTAGTTGACTTCAGTTACTCGGGAGGCCAGACAAAGGAATTTAGCAAACATCAATTTGTCGACATTAAGAACAATTTACAGCATAGGTTCAGACAGAAGAGAAGATTCAAGCATTTTTTAACTTGGAACAGAATAGTGATTTGCATCTCCTAGGAAGGATATAGACAAGAATGAGATGCATTAGATCAGCTTGTGTATGTATTCTGCTATTACTTTATTTTGGTATTCCATTATGACAATGTCCTGAGTTGTCATAAATAGTTTTGAGCACAAGATTAATAAGATGAAACAAGGGATTCAAAAAGAAAGCATCTCATTATCAGAAGTTCTGAGCGATAATTTACTGAAATATACATGTTCCTAGCAGTTTAGCTATAAGTTCAGTAAAAAGAGGATTCTCGGACAATTAAGGGTAAGTAAGAACATATAATATGCTAACCTGAAAAGAAGCAACACTACTGCATAATTTCATGGCTTCACCAGAAGATCAGGAATGCATGCTATACTTTTGCCCCAGCTCAACCTTTTTTTTTTTTCCCAAGGCATTCACGAGAACACCAAATAATTTTGTGCTTGCCATTTCTCTTCAAGCTCCCATGCTTACTCATAGATTCCTCCGAAGTCTTGTTAACGAAACTGCAGAATCAATTGGGCTCATGCCAGCATGCTATGTACCAACATGCTGGATTGGTTCGGATTCACCCTGCTTGTCCCTGCAGGTTTTCCAGCATTCAGGGCAGCTACTCTTTCTCTTACCTTCCCAGCCTGCTCCCATTGTCCAACACCAGCATACATGTTAGCCAGCAGGACAAGGTGCCCAGCTGCTCGCTCTGGCTGCAGCCTAATCAACCTTTCAATCACTTGTGCTGCGAGCTCAAGATTGCCTTCCCTCTTGCATCCGCTAAGTAGTGCGCCCAACACAGCATCATTAGGCTGCAAATGCATTGTCTCCACAAACTCAATTGCTTCACGCAATTGCTTCCCGTGGCAGAGCATGTCAACCATGCAGCCGTAGTGCTGTATCCCTGGAGTGATCCCGTAAAATCTTTCCATACTCTGAAAGTATTGTCGTCCATCATCAACCCTCCCTGCATTGCTGCATGCCAACAACACTGCAAGCAGAGTAGCACCATCAGGACGCTCCTGCATTCTGTGAAACAAGTCTAGTGCCTCCTCGGCGCGGCCATGGATCGCAAGCCCTGAGATCATAGTCGTCCATGAGACGGTACTCCTCCTTGGCATCACCAGGAATAAGCGGTGCGCATCCTCCACAGCCCCACACTTCACATACATATTGATGAGTGCATTGTCCAGCAAAACAGTCCGCCACTGTCGTCCTTCCTGCTCGACATGGGCATGCACCCACCGCCCGAGCCGCAGGTCTCCCTGCTCGGCACAGGCCGTAAGCAAAGCAACCATGGTCACAGCGTCAACCTTCGCATTTGCCTTCCTCATCCTCCAGAACAGCTCAACCGCCTCTGCTGCCTTCCCGGCATTCACGCAACCAGCAATCATCGTTGTCCACGCCACAGAGTCTCTCCCAGGCATCTCATTGAAGAACCACAATGCGGCGTCCATCTCACAGCACCGAACATACGCCGCAAGCATGCAATTCCATGCTGCCACGGTCCTGCCAGGCATTTCGTCGAACACCCTCCGGGCCTCCCCCAGTTGCCCAGCCGCCGCATAAAGATCAAGGAGGCTGGTCAGCACGTGCCCACTGGACAGCACTAGCCCGCACGCTAGCGCGCGGGCGTGGAGAGCGCGGCCGTGTGGGAGCGCCGCGGCGCCCGCGTCCGCGAGGGCAGCGAGGAGCGTGGAGAAGGAGAAGGCGTTGGGGCGGAACCCGTGGCGGGAAACGAGGCGCGAGAAGAGTGCCACCAGCCGGTCCGGCGGCGCGCGGGACGACGCGGCGGCGCGGAGAACGAGGTTGGCCAGGGTGGGCGTCGACGACGAGGTGGAGGAGGAGCACTCGGCCGCGGGGGCGGCGAGGAAGAGGGACTCTGCGCGGGGGAGGTCGGCGGCGGCGGCGGCGAGGGAGAGGAGCTTGGCGAGGAGGAAGCGCTTGCGTGGGAAGCCGTTGAGGACCACCTGCGCGTGGAGCTGGTCGAGCGCGCGGCGGGCGGCGGAGGCGTCGCCGTCGCCCGGGGGGATGCGGCGGCGGCGGTGCTGGGCGAGGAGGTAGAGGCGCTGCTGCAGCGCGCGGGAGTAGGGGACGTGAGGGGGCAGGTTGGGTGGGTGGCCGGGAGGAGGAGGAGGAGGAGGACGGCGGCGGCCATGGCCATCGCCGTCGCGCGGCATGGCTTGCGCGCTGCGCGGGAAT
More
|
||||||||||
| CDS seq | ATGCCGCGCGACGGCGATGGCCATGGCCGCCGCCGTCCTCCTCCTCCTCCTCCTCCCGGCCACCCACCCAACCTGCCCCCTCACGTCCCCTACTCCCGCGCGCTGCAGCAGCGCCTCTACCTCCTCGCCCAGCACCGCCGCCGCCGCATCCCCCCGGGCGACGGCGACGCCTCCGCCGCCCGCCGCGCGCTCGACCAGCTCCACGCGCAGGTGGTCCTCAACGGCTTCCCACGCAAGCGCTTCCTCCTCGCCAAGCTCCTCTCCCTCGCCGCCGCCGCCGCCGACCTCCCCCGCGCAGAGTCCCTCTTCCTCGCCGCCCCCGCGGCCGAGTGCTCCTCCTCCACCTCGTCGTCGACGCCCACCCTGGCCAACCTCGTTCTCCGCGCCGCCGCGTCGTCCCGCGCGCCGCCGGACCGGCTGGTGGCACTCTTCTCGCGCCTCGTTTCCCGCCACGGGTTCCGCCCCAACGCCTTCTCCTTCTCCACGCTCCTCGCTGCCCTCGCGGACGCGGGCGCCGCGGCGCTCCCACACGGCCGCGCTCTCCACGCCCGCGCGCTAGCGTGCGGGCTAGTGCTGTCCAGTGGGCACGTGCTGACCAGCCTCCTTGATCTTTATGCGGCGGCTGGGCAACTGGGGGAGGCCCGGAGGGTGTTCGACGAAATGCCTGGCAGGACCGTGGCAGCATGGAATTGCATGCTTGCGGCGTATGTTCGGTGCTGTGAGATGGACGCCGCATTGTGGTTCTTCAATGAGATGCCTGGGAGAGACTCTGTGGCGTGGACAACGATGATTGCTGGTTGCGTGAATGCCGGGAAGGCAGCAGAGGCGGTTGAGCTGTTCTGGAGGATGAGGAAGGCAAATGCGAAGGTTGACGCTGTGACCATGGTTGCTTTGCTTACGGCCTGTGCCGAGCAGGGAGACCTGCGGCTCGGGCGGTGGGTGCATGCCCATGTCGAGCAGGAAGGACGACAGTGGCGGACTGTTTTGCTGGACAATGCACTCATCAATATGTATGTGAAGTGTGGGGCTGTGGAGGATGCGCACCGCTTATTCCTGGTGATGCCAAGGAGGAGTACCGTCTCATGGACGACTATGATCTCAGGGCTTGCGATCCATGGCCGCGCCGAGGAGGCACTAGACTTGTTTCACAGAATGCAGGAGCGTCCTGATGGTGCTACTCTGCTTGCAGTGTTGTTGGCATGCAGCAATGCAGGGAGGGTTGATGATGGACGACAATACTTTCAGAGTATGGAAAGATTTTACGGGATCACTCCAGGGATACAGCACTACGGCTGCATGGTTGACATGCTCTGCCACGGGAAGCAATTGCGTGAAGCAATTGAGTTTGTGGAGACAATGCATTTGCAGCCTAATGATGCTGTGTTGGGCGCACTACTTAGCGGATGCAAGAGGGAAGGCAATCTTGAGCTCGCAGCACAAGTGATTGAAAGGTTGATTAGGCTGCAGCCAGAGCGAGCAGCTGGGCACCTTGTCCTGCTGGCTAACATGTATGCTGGTGTTGGACAATGGGAGCAGGCTGGGAAGGTAAGAGAAAGAGTAGCTGCCCTGAATGCTGGAAAACCTGCAGGGACAAGCAGGGTGAATCCGAACCAATCCAGCATGTTGGTACATAGCATGCTGGCATGA
More
|
||||||||||
| Protein seq | MPRDGDGHGRRRPPPPPPPGHPPNLPPHVPYSRALQQRLYLLAQHRRRRIPPGDGDASAARRALDQLHAQVVLNGFPRKRFLLAKLLSLAAAAADLPRAESLFLAAPAAECSSSTSSSTPTLANLVLRAAASSRAPPDRLVALFSRLVSRHGFRPNAFSFSTLLAALADAGAAALPHGRALHARALACGLVLSSGHVLTSLLDLYAAAGQLGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNAGKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQERPDGATLLAVLLACSNAGRVDDGRQYFQSMERFYGITPGIQHYGCMVDMLCHGKQLREAIEFVETMHLQPNDAVLGALLSGCKREGNLELAAQVIERLIRLQPERAAGHLVLLANMYAGVGQWEQAGKVRERVAALNAGKPAGTSRVNPNQSSMLVHSMLA |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At5g15300 [UniProtKB/Swiss-Prot:Q9LXF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0411600 | Os09t0411600-01 | Chr09 | 14603951 | 14607125 | - | irgsp1_rep | ||
| CDS seq | ATGCCGCGCGACGGCGATGGCCATGGCCGCCGCCGTCCTCCTCCTCCTCCTCCTCCCGGCCACCCACCCAACCTGCCCCCTCACGTCCCCTACTCCCGCGCGCTGCAGCAGCGCCTCTACCTCCTCGCCCAGCACCGCCGCCGCCGCATCCCCCCGGGCGACGGCGACGCCTCCGCCGCCCGCCGCGCGCTCGACCAGCTCCACGCGCAGGTGGTCCTCAACGGCTTCCCACGCAAGCGCTTCCTCCTCGCCAAGCTCCTCTCCCTCGCCGCCGCCGCCGCCGACCTCCCCCGCGCAGAGTCCCTCTTCCTCGCCGCCCCCGCGGCCGAGTGCTCCTCCTCCACCTCGTCGTCGACGCCCACCCTGGCCAACCTCGTTCTCCGCGCCGCCGCGTCGTCCCGCGCGCCGCCGGACCGGCTGGTGGCACTCTTCTCGCGCCTCGTTTCCCGCCACGGGTTCCGCCCCAACGCCTTCTCCTTCTCCACGCTCCTCGCTGCCCTCGCGGACGCGGGCGCCGCGGCGCTCCCACACGGCCGCGCTCTCCACGCCCGCGCGCTAGCGTGCGGGCTAGTGCTGTCCAGTGGGCACGTGCTGACCAGCCTCCTTGATCTTTATGCGGCGGCTGGGCAACTGGGGGAGGCCCGGAGGGTGTTCGACGAAATGCCTGGCAGGACCGTGGCAGCATGGAATTGCATGCTTGCGGCGTATGTTCGGTGCTGTGAGATGGACGCCGCATTGTGGTTCTTCAATGAGATGCCTGGGAGAGACTCTGTGGCGTGGACAACGATGATTGCTGGTTGCGTGAATGCCGGGAAGGCAGCAGAGGCGGTTGAGCTGTTCTGGAGGATGAGGAAGGCAAATGCGAAGGTTGACGCTGTGACCATGGTTGCTTTGCTTACGGCCTGTGCCGAGCAGGGAGACCTGCGGCTCGGGCGGTGGGTGCATGCCCATGTCGAGCAGGAAGGACGACAGTGGCGGACTGTTTTGCTGGACAATGCACTCATCAATATGTATGTGAAGTGTGGGGCTGTGGAGGATGCGCACCGCTTATTCCTGGTGATGCCAAGGAGGAGTACCGTCTCATGGACGACTATGATCTCAGGGCTTGCGATCCATGGCCGCGCCGAGGAGGCACTAGACTTGTTTCACAGAATGCAGGAGCGTCCTGATGGTGCTACTCTGCTTGCAGTGTTGTTGGCATGCAGCAATGCAGGGAGGGTTGATGATGGACGACAATACTTTCAGAGTATGGAAAGATTTTACGGGATCACTCCAGGGATACAGCACTACGGCTGCATGGTTGACATGCTCTGCCACGGGAAGCAATTGCGTGAAGCAATTGAGTTTGTGGAGACAATGCATTTGCAGCCTAATGATGCTGTGTTGGGCGCACTACTTAGCGGATGCAAGAGGGAAGGCAATCTTGAGCTCGCAGCACAAGTGATTGAAAGGTTGATTAGGCTGCAGCCAGAGCGAGCAGCTGGGCACCTTGTCCTGCTGGCTAACATGTATGCTGGTGTTGGACAATGGGAGCAGGCTGGGAAGGTAAGAGAAAGAGTAGCTGCCCTGAATGCTGGAAAACCTGCAGGGACAAGCAGGGTGAATCCGAACCAATCCAGCATGTTGGTACATAGCATGCTGGCATGA
More
|
|||||||
| Protein seq | MPRDGDGHGRRRPPPPPPPGHPPNLPPHVPYSRALQQRLYLLAQHRRRRIPPGDGDASAARRALDQLHAQVVLNGFPRKRFLLAKLLSLAAAAADLPRAESLFLAAPAAECSSSTSSSTPTLANLVLRAAASSRAPPDRLVALFSRLVSRHGFRPNAFSFSTLLAALADAGAAALPHGRALHARALACGLVLSSGHVLTSLLDLYAAAGQLGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNAGKAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQERPDGATLLAVLLACSNAGRVDDGRQYFQSMERFYGITPGIQHYGCMVDMLCHGKQLREAIEFVETMHLQPNDAVLGALLSGCKREGNLELAAQVIERLIRLQPERAAGHLVLLANMYAGVGQWEQAGKVRERVAALNAGKPAGTSRVNPNQSSMLVHSMLA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0411600 | RBH | 0.0 | 0.099002 | 0.235950 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24520 | RBH | 0.0 | 0.185665 | 0.056452 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0434000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010020 | RBH | 0.000000 | 1.378947 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009970 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010270 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010020 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010140 | RBH | 0.548369 | 1.275805 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0245900 | RBH | 0.4147785 | 0.713155 | 0.412997 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0231900 | RBH | 0.507407 | 1.003224 | 2.4105375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010370 | RBH | 0.182235 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010170 | RBH | 0.000000 | 0.000000 | 0.000000 |
