Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0400500 | OGI:09041700 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:14007882-14009971 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGTATGAACTATGATCATGACGAAGAATTTTGAATTTTACAATTTTTGGGACCAATGAACTGAAAAAAAAGAAAGAAAATGTCACTGAAACTACTGAGAAACGCTGTCGAAATCGTCCACGTCGGCGTTCCGGATGACGGTGTCGACGATGTGCTCGATCCTCGCCGCCACCTCGGCCATGGTGGGCCGCCGCTCCGGCCGCTGCTCGGTGCATTCGACGGCGAGCTTTAGCAGCCGCATCATCTCCTCTTCCGCGTGCGCCTCGTCGGCGATGCTGGCGTCGAACACCTCGGCCGTCCACTCCTCATGCACCACCGCGCGCACCCACTGCGGCAGGTCGACGCCGTCGAACCCCGGCACCGCGTTCGCCGGCGGCCTCCCCGTGAGCATCTCGAGGAGCACCACGCCGAAGCTGTACACGTCCGCCTCCCGCGACGCCCTGCGCAGGTCGCTCACCTCCGGCGCGCGGTAGCCGGTCACCCGCTTCAGCGGCACGGCGGCGCCGAGGAGCTGGGCGAGGCCGTGGTCGGTCACGTAGGCGCCGTCGTGCGTGCGGTTGACGACGATGTTCGACGACTTGATGTTGCCGTGGGACGAGCCGGCGCCGTGGATGAACGCGACGCCGCGCGCCGCCGCCAGCGCGATGCGCGCCCGCGACGTGAAGCCGAGGCGCGCGCGGCGCACGGCGCCGCCGCCGCCGTGGAGGAGGGAGGAGAGGGCTCCGGCGCCGACGAAGTCCGAGACGAGGAGCTTCTCGTCCCTGCTGTAGAAGTAGGCGCGGAGCGGCGCGAGGTTCTCGTGGCGGAGCGCGGCGAGCTCGGCCACGCTGTCACGGAACTCCCTCTCCGCGATGGGCGCCTCCCTGAGCCGCTTGACGGCCACCACGGCGGCGCCGCCCTCGAGCGTGGCGCGGTACGTCGTGCCGAGCCAGCCCTTCCCGAGCACCTCGGCCGACGCGTGCAGCAGCGTGTCCAGGTCGTAGGGCACGTCCGGCTCGCCGCCGACGAACACCAGCTTCTTGGCGCCGCTCGCCGTCGTCGTCTGCTGCGACGGGCGCGACCGCGACCGCTTCACTTCGACCTTGTCCGTCCTCGCCACCGTGACCGACACCGGGGACGCGTCCTCGTCGACGTCGGCTGGTCTCCCTTCCTTTCTCCTCCCACGCTTGAAACAGAGGAGGACGATCACCGCGAGCGCCACCAACAACGCCGCCGCGGCGCCGACAGCGATGCCGGCGATTGCACCACCGGAGAGCTTGCTGCTCTTGCTATCTTGAGAAGCTGCCGGAGGCGGCGGAATCGGCGGCGACGGCGACGGCGACGGCGATGGCGGCGAAGTGTTTGTACACGGGCTTAGAGGGCCACCGCAGAGTCCTGTCCCACTGAAGGCGCTCGCCGGCTTCCCGGCGAGCGACGCCGGCACGGCGCCGGTGAGCTGGTCGTTGTTGGACACGTTGAAGAGTTGAAGCTTCGGGAGATCAAGATCGGCGGGGAGGGTGCCATTGAGGCCGTTGTTCTCCAAGTAGAGAGTGGCGAGCCGCCGGAGCTTGTTGAACTCCGGCGAGATGCTCCCCGTGATGCGGTTGCGCGAGAGGTCGAGCCGCTGTAGCAACAGAAGCGAGAAGAACCCCTCCGGCACCTCGCCGGCGAGCTGGTTTCCCTGCAGGTAGAGTGCCCGGAGCTCCCCGCAGTTGCCGATGTCCACCGGGATCCCGCCGGAGAGCGCGTTGGAGCGCAGCGACAGCGTCCGCAGCGCCGTCAGGTTTCCCACCGTCCCCGTCGGCACCCTCCCTACCAGCTTCGCGCCGGGGAGCTGCAGCGCGACGACACGCCCACCGCCGGCGTCGCACCGGACGCCGCGCCACCCGCACGGCGAGGACGACGACGACGCCCACGGCAGCCGCGGGCCGACCGCGTCCCGGAACGCAAGCAGCGCCGCCGTGTCCGCCGCGAGGTCCTGCCCCGCACCCGCGCCGCCACCGATCAGCGCGGCGCACCACAACAACGCGACGACCACGCCGACCGCCGCACGCGGCATCGTCACCTCGCCGCCGCCCGAAGCAAGCGAGCGAGCGACGGAGTCCAAACT
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| CDS seq | ATGCCGCGTGCGGCGGTCGGCGTGGTCGTCGCGTTGTTGTGGTGCGCCGCGCTGATCGGTGGCGGCGCGGGTGCGGGGCAGGACCTCGCGGCGGACACGGCGGCGCTGCTTGCGTTCCGGGACGCGGTCGGCCCGCGGCTGCCGTGGGCGTCGTCGTCGTCCTCGCCGTGCGGGTGGCGCGGCGTCCGGTGCGACGCCGGCGGTGGGCGTGTCGTCGCGCTGCAGCTCCCCGGCGCGAAGCTGGTAGGGAGGGTGCCGACGGGGACGGTGGGAAACCTGACGGCGCTGCGGACGCTGTCGCTGCGCTCCAACGCGCTCTCCGGCGGGATCCCGGTGGACATCGGCAACTGCGGGGAGCTCCGGGCACTCTACCTGCAGGGAAACCAGCTCGCCGGCGAGGTGCCGGAGGGGTTCTTCTCGCTTCTGTTGCTACAGCGGCTCGACCTCTCGCGCAACCGCATCACGGGGAGCATCTCGCCGGAGTTCAACAAGCTCCGGCGGCTCGCCACTCTCTACTTGGAGAACAACGGCCTCAATGGCACCCTCCCCGCCGATCTTGATCTCCCGAAGCTTCAACTCTTCAACGTGTCCAACAACGACCAGCTCACCGGCGCCGTGCCGGCGTCGCTCGCCGGGAAGCCGGCGAGCGCCTTCAGTGGGACAGGACTCTGCGGTGGCCCTCTAAGCCCGTGTACAAACACTTCGCCGCCATCGCCGTCGCCGTCGCCGTCGCCGCCGATTCCGCCGCCTCCGGCAGCTTCTCAAGATAGCAAGAGCAGCAAGCTCTCCGGTGGTGCAATCGCCGGCATCGCTGTCGGCGCCGCGGCGGCGTTGTTGGTGGCGCTCGCGGTGATCGTCCTCCTCTGTTTCAAGCGTGGGAGGAGAAAGGAAGGGAGACCAGCCGACGTCGACGAGGACGCGTCCCCGGTGTCGGTCACGGTGGCGAGGACGGACAAGGTCGAAGTGAAGCGGTCGCGGTCGCGCCCGTCGCAGCAGACGACGACGGCGAGCGGCGCCAAGAAGCTGGTGTTCGTCGGCGGCGAGCCGGACGTGCCCTACGACCTGGACACGCTGCTGCACGCGTCGGCCGAGGTGCTCGGGAAGGGCTGGCTCGGCACGACGTACCGCGCCACGCTCGAGGGCGGCGCCGCCGTGGTGGCCGTCAAGCGGCTCAGGGAGGCGCCCATCGCGGAGAGGGAGTTCCGTGACAGCGTGGCCGAGCTCGCCGCGCTCCGCCACGAGAACCTCGCGCCGCTCCGCGCCTACTTCTACAGCAGGGACGAGAAGCTCCTCGTCTCGGACTTCGTCGGCGCCGGAGCCCTCTCCTCCCTCCTCCACGGCGGCGGCGGCGCCGTGCGCCGCGCGCGCCTCGGCTTCACGTCGCGGGCGCGCATCGCGCTGGCGGCGGCGCGCGGCGTCGCGTTCATCCACGGCGCCGGCTCGTCCCACGGCAACATCAAGTCGTCGAACATCGTCGTCAACCGCACGCACGACGGCGCCTACGTGACCGACCACGGCCTCGCCCAGCTCCTCGGCGCCGCCGTGCCGCTGAAGCGGGTGACCGGCTACCGCGCGCCGGAGGTGAGCGACCTGCGCAGGGCGTCGCGGGAGGCGGACGTGTACAGCTTCGGCGTGGTGCTCCTCGAGATGCTCACGGGGAGGCCGCCGGCGAACGCGGTGCCGGGGTTCGACGGCGTCGACCTGCCGCAGTGGGTGCGCGCGGTGGTGCATGAGGAGTGGACGGCCGAGGTGTTCGACGCCAGCATCGCCGACGAGGCGCACGCGGAAGAGGAGATGATGCGGCTGCTAAAGCTCGCCGTCGAATGCACCGAGCAGCGGCCGGAGCGGCGGCCCACCATGGCCGAGGTGGCGGCGAGGATCGAGCACATCGTCGACACCGTCATCCGGAACGCCGACGTGGACGATTTCGACAGCGTTTCTCAGTAG
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| Protein seq | MPRAAVGVVVALLWCAALIGGGAGAGQDLAADTAALLAFRDAVGPRLPWASSSSSPCGWRGVRCDAGGGRVVALQLPGAKLVGRVPTGTVGNLTALRTLSLRSNALSGGIPVDIGNCGELRALYLQGNQLAGEVPEGFFSLLLLQRLDLSRNRITGSISPEFNKLRRLATLYLENNGLNGTLPADLDLPKLQLFNVSNNDQLTGAVPASLAGKPASAFSGTGLCGGPLSPCTNTSPPSPSPSPSPPIPPPPAASQDSKSSKLSGGAIAGIAVGAAAALLVALAVIVLLCFKRGRRKEGRPADVDEDASPVSVTVARTDKVEVKRSRSRPSQQTTTASGAKKLVFVGGEPDVPYDLDTLLHASAEVLGKGWLGTTYRATLEGGAAVVAVKRLREAPIAEREFRDSVAELAALRHENLAPLRAYFYSRDEKLLVSDFVGAGALSSLLHGGGGAVRRARLGFTSRARIALAAARGVAFIHGAGSSHGNIKSSNIVVNRTHDGAYVTDHGLAQLLGAAVPLKRVTGYRAPEVSDLRRASREADVYSFGVVLLEMLTGRPPANAVPGFDGVDLPQWVRAVVHEEWTAEVFDASIADEAHAEEEMMRLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ |
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| Function | Probable inactive receptor kinase At1g48480 [UniProtKB/Swiss-Prot:Q9LP77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0400500 | Os09t0400500-01 | Chr09 | 14007882 | 14009971 | - | irgsp1_rep | ||
| CDS seq | ATGCCGCGTGCGGCGGTCGGCGTGGTCGTCGCGTTGTTGTGGTGCGCCGCGCTGATCGGTGGCGGCGCGGGTGCGGGGCAGGACCTCGCGGCGGACACGGCGGCGCTGCTTGCGTTCCGGGACGCGGTCGGCCCGCGGCTGCCGTGGGCGTCGTCGTCGTCCTCGCCGTGCGGGTGGCGCGGCGTCCGGTGCGACGCCGGCGGTGGGCGTGTCGTCGCGCTGCAGCTCCCCGGCGCGAAGCTGGTAGGGAGGGTGCCGACGGGGACGGTGGGAAACCTGACGGCGCTGCGGACGCTGTCGCTGCGCTCCAACGCGCTCTCCGGCGGGATCCCGGTGGACATCGGCAACTGCGGGGAGCTCCGGGCACTCTACCTGCAGGGAAACCAGCTCGCCGGCGAGGTGCCGGAGGGGTTCTTCTCGCTTCTGTTGCTACAGCGGCTCGACCTCTCGCGCAACCGCATCACGGGGAGCATCTCGCCGGAGTTCAACAAGCTCCGGCGGCTCGCCACTCTCTACTTGGAGAACAACGGCCTCAATGGCACCCTCCCCGCCGATCTTGATCTCCCGAAGCTTCAACTCTTCAACGTGTCCAACAACGACCAGCTCACCGGCGCCGTGCCGGCGTCGCTCGCCGGGAAGCCGGCGAGCGCCTTCAGTGGGACAGGACTCTGCGGTGGCCCTCTAAGCCCGTGTACAAACACTTCGCCGCCATCGCCGTCGCCGTCGCCGTCGCCGCCGATTCCGCCGCCTCCGGCAGCTTCTCAAGATAGCAAGAGCAGCAAGCTCTCCGGTGGTGCAATCGCCGGCATCGCTGTCGGCGCCGCGGCGGCGTTGTTGGTGGCGCTCGCGGTGATCGTCCTCCTCTGTTTCAAGCGTGGGAGGAGAAAGGAAGGGAGACCAGCCGACGTCGACGAGGACGCGTCCCCGGTGTCGGTCACGGTGGCGAGGACGGACAAGGTCGAAGTGAAGCGGTCGCGGTCGCGCCCGTCGCAGCAGACGACGACGGCGAGCGGCGCCAAGAAGCTGGTGTTCGTCGGCGGCGAGCCGGACGTGCCCTACGACCTGGACACGCTGCTGCACGCGTCGGCCGAGGTGCTCGGGAAGGGCTGGCTCGGCACGACGTACCGCGCCACGCTCGAGGGCGGCGCCGCCGTGGTGGCCGTCAAGCGGCTCAGGGAGGCGCCCATCGCGGAGAGGGAGTTCCGTGACAGCGTGGCCGAGCTCGCCGCGCTCCGCCACGAGAACCTCGCGCCGCTCCGCGCCTACTTCTACAGCAGGGACGAGAAGCTCCTCGTCTCGGACTTCGTCGGCGCCGGAGCCCTCTCCTCCCTCCTCCACGGCGGCGGCGGCGCCGTGCGCCGCGCGCGCCTCGGCTTCACGTCGCGGGCGCGCATCGCGCTGGCGGCGGCGCGCGGCGTCGCGTTCATCCACGGCGCCGGCTCGTCCCACGGCAACATCAAGTCGTCGAACATCGTCGTCAACCGCACGCACGACGGCGCCTACGTGACCGACCACGGCCTCGCCCAGCTCCTCGGCGCCGCCGTGCCGCTGAAGCGGGTGACCGGCTACCGCGCGCCGGAGGTGAGCGACCTGCGCAGGGCGTCGCGGGAGGCGGACGTGTACAGCTTCGGCGTGGTGCTCCTCGAGATGCTCACGGGGAGGCCGCCGGCGAACGCGGTGCCGGGGTTCGACGGCGTCGACCTGCCGCAGTGGGTGCGCGCGGTGGTGCATGAGGAGTGGACGGCCGAGGTGTTCGACGCCAGCATCGCCGACGAGGCGCACGCGGAAGAGGAGATGATGCGGCTGCTAAAGCTCGCCGTCGAATGCACCGAGCAGCGGCCGGAGCGGCGGCCCACCATGGCCGAGGTGGCGGCGAGGATCGAGCACATCGTCGACACCGTCATCCGGAACGCCGACGTGGACGATTTCGACAGCGTTTCTCAGTAG
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| Protein seq | MPRAAVGVVVALLWCAALIGGGAGAGQDLAADTAALLAFRDAVGPRLPWASSSSSPCGWRGVRCDAGGGRVVALQLPGAKLVGRVPTGTVGNLTALRTLSLRSNALSGGIPVDIGNCGELRALYLQGNQLAGEVPEGFFSLLLLQRLDLSRNRITGSISPEFNKLRRLATLYLENNGLNGTLPADLDLPKLQLFNVSNNDQLTGAVPASLAGKPASAFSGTGLCGGPLSPCTNTSPPSPSPSPSPPIPPPPAASQDSKSSKLSGGAIAGIAVGAAAALLVALAVIVLLCFKRGRRKEGRPADVDEDASPVSVTVARTDKVEVKRSRSRPSQQTTTASGAKKLVFVGGEPDVPYDLDTLLHASAEVLGKGWLGTTYRATLEGGAAVVAVKRLREAPIAEREFRDSVAELAALRHENLAPLRAYFYSRDEKLLVSDFVGAGALSSLLHGGGGAVRRARLGFTSRARIALAAARGVAFIHGAGSSHGNIKSSNIVVNRTHDGAYVTDHGLAQLLGAAVPLKRVTGYRAPEVSDLRRASREADVYSFGVVLLEMLTGRPPANAVPGFDGVDLPQWVRAVVHEEWTAEVFDASIADEAHAEEEMMRLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0400500 | RBH | 0.233630 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g23570 | RBH | 0.143381 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0427600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009570 | RBH | 0.0 | 0.796303 | 0.272478 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009590 | RBH | 0.015483 | 0.025274 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009770 | RBH | 0.454552 | 0.0 | 0.430837 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0239300 | RBH | 0.594639 | 8.465071 | 0.011393 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009730 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0225200 | RBH | 0.810802 | 9.081542 | 0.017142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009730 | RBH | 0.071945 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009490 | RBH | 0.158403 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009450 | RBH | 0.0 | 0.0 | 0.068240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009480 | RBH | 0.0 | 0.602112 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009980 | RBH | 0.0 | 0.386371 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009790 | RBH | 0.206360 | 0.0 | 0.0 |
