Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os09g0376600		OGI:09037260 \| 16/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr09:12627180-12629654		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		RLCK269, OsRLCK269, -
DNA seq		ATGGAGAAGAGTAAGGTCGTCGTCTTTGCCGGTCGGGTGCTCGCGATAGTAGCGTTGCTGCTGGCGTGCTGCTGCATGGCGGCGGCGGCGCAGGGCGGGGAGGGGGCTAGGGTGAGGGAGTCGCTCATCGGATTCCTGACCGAGCTCGCCGGCGGCGACAAGGAGAGAGCGCGCGGCATCGGGTGGGACGCGTCGGTCGAACCGTGCGACGGCAACCGGACGGTGTGGCCCGGCGTCGGCTGCAACGGCGCCCCCGCCGGCGATGGCCGGATCACAGCCATCGTGCTGGAGCGCAAGGGGCTGGACGGCACCATCAACGCGGCGTCGCTCTGCGCCGCCGCGCCCGCGCTCCGCGTGCTGAGCCTGGAGGGCAACGCGCTGCGCGGCGACCTCCCCGCGGCCATCTCCGGCTGCGCCAGGCTGACGCACATCTACGTCGGCGACAACCGCCTCTCCGGCAGCCTCCCGCCGTCGCTCGCCGAGCTCGCCAGCCTCCACGTGCTCAACGTCTCCAGGAACAGCTTCTCCGGCGAGATCCCCGCCGAGCTCAGCAAGCTCGGCCTCGTGAGATTCTGCGTCAACGACAACCGTTTCAACGGCGCCATCCCGGAGTTCGAGCTGTCCAGGTTCGAGCACTTCAGCGTCGCGAACAACAACCTCACCGGCCCGATCCCCGACGACGCCGGCGACTTCGGCCGCGACAGCTTCTCCGGCAACTCGGACGGCCTGTGCGGCCGGCCGGACTTCCCGCCGTGCCCGCCCCCGCCGAGCTCCGGCGAGAACGATGGGAAGAGGAGGAGGAGGGCGCGGACGATCGTCATGTGCCTCGGCTACGTCCTCCTCGGCGCCGGCGTGGCGGCCTTCGTCTTGTACATGATGTGCTCCAAGAGGCGGAGGAGACCAAGCGGCGTCGGCGGCAAGACGGCGGCGACGACGGAGACATCATCGTCGGTGACCCCAGGGAAGTCGGCATACTCCCTCCCGATGTCGGAGGAGCGGATGAACGCCACGGCGGCGGCAGCGGCGGCGGTGGCGCGCGCGACGCCGGCGTCGCTGGTGGTGCTGCAACGATCGGGCACGGCGGCGTCGACGGTGATGACACTGAACACTGCGGCGGCGGCGGCGGCGGAGGCGGCGAGGAAGCTGCGGTTCGAGGACCTGCTCAGGTCGCCGGCGGAGCTGCTGGGGCGCGGCAGGTTCGGGAGCGCGTACAAGGTGGTGGTGCCCGGCGGCGCCGCGCTGGCGGTGAAGCGGGTGAAGGACGCGGCGGGGGCGGAGGAGGAGGAGGAGTTCCGGCGGCGGATGGAGCGCGTCGGGAAGGCGAGGCACCCGGCCGTGCTGCCGCCGCTGGCGTTCTACTGCGCCATGCAGGAGAAGCTGGTGGTGTACGAGTTCCTCGGCCATGGCAGCCTCGCCAAGCTTCTCCATGGTAAGCTGAAGCTCTGCTTGTCTTTTGATGGATGGGCCTTAATTCCGGCCCATCCATGTGGGTGGGCTGAGATTTTGATCCAAATCATGGCCTGCTTACTTGGATGGGCTCGGATCGAGGCCCATATGAACAATGCTACTTAGGCCCATTTTGTTCTGTCTCTAAATCTCTAATTGGCTCACCTGCTTCTTAATTTAGACCATTTGCTATTATGCATACTGATGTAGAATAATAAACTCAAACATCTTTTTCAGCATTAAAAAGAAAATTATAGTAATTTATAAGAGCATTTGAGATATGTGTAACTTTTATGAAAGCATTTTCTTTGGATGTTCGATTTAGGAATGGGGAATTAGTCATTATGTTTGATTGTTTTGTCAAAAAATGATTTGTGATTTTTCATTTTTGCAGGTTCTATAGAGAGCAGCCAGGTCGCCCTGGACTGGCCGGCGCGCCTCCACATCGCCTCCAAGGTCGCCGACGGCATGGCGTTCATGCACGGCGCCCTGCGCGGAGGCGACGGCGACGGCGACGGCGCGAACGCGAACTTGTCGTTCTCATCCTCCTACGAGGAGGACGAGGCCGGCGGCGCCATCGCTCACGGCAACCTCAAGGCCTCCAACATCCTCTTCACGGCCACCATGGAGCCCTGCATCAGCGAGTACGGCGTCACCGCGCCGCCGCCGCCGTCGTCGGCGCCAGCGGCGGCGCTTCGCGCCGACGTGCGCGCGTACGGCGTGCTGCTGCTGGAGCTGCTCACGGGGAAGGCCACGGCAGCGGACGGCGCCGAGCTGTCGCGGTGGGTGACGGCCGTCATCCGGGAGGAGTGGACAGCCGAGGTGTTCGACCGCGCGATGCTCTCCTCCGCCGGCGCCGGCGGCGACACCGTCGCCAGCGAGCAGCGGATGGTGCGCCTGCTGCAGGTCGCCATGAGATGCATCGACGACGCCTCCTCGCCGTCGCCGCCGCCCACCATGAGGGAGGTCGCTGGCATGGTGAACGCCATCCGCGAGGAAGACGACATGTCGCTCTCCTCGGAGGCATGA More
CDS seq		ATGGAGAAGAGTAAGGTCGTCGTCTTTGCCGGTCGGGTGCTCGCGATAGTAGCGTTGCTGCTGGCGTGCTGCTGCATGGCGGCGGCGGCGCAGGGCGGGGAGGGGGCTAGGGTGAGGGAGTCGCTCATCGGATTCCTGACCGAGCTCGCCGGCGGCGACAAGGAGAGAGCGCGCGGCATCGGGTGGGACGCGTCGGTCGAACCGTGCGACGGCAACCGGACGGTGTGGCCCGGCGTCGGCTGCAACGGCGCCCCCGCCGGCGATGGCCGGATCACAGCCATCGTGCTGGAGCGCAAGGGGCTGGACGGCACCATCAACGCGGCGTCGCTCTGCGCCGCCGCGCCCGCGCTCCGCGTGCTGAGCCTGGAGGGCAACGCGCTGCGCGGCGACCTCCCCGCGGCCATCTCCGGCTGCGCCAGGCTGACGCACATCTACGTCGGCGACAACCGCCTCTCCGGCAGCCTCCCGCCGTCGCTCGCCGAGCTCGCCAGCCTCCACGTGCTCAACGTCTCCAGGAACAGCTTCTCCGGCGAGATCCCCGCCGAGCTCAGCAAGCTCGGCCTCGTGAGATTCTGCGTCAACGACAACCGTTTCAACGGCGCCATCCCGGAGTTCGAGCTGTCCAGGTTCGAGCACTTCAGCGTCGCGAACAACAACCTCACCGGCCCGATCCCCGACGACGCCGGCGACTTCGGCCGCGACAGCTTCTCCGGCAACTCGGACGGCCTGTGCGGCCGGCCGGACTTCCCGCCGTGCCCGCCCCCGCCGAGCTCCGGCGAGAACGATGGGAAGAGGAGGAGGAGGGCGCGGACGATCGTCATGTGCCTCGGCTACGTCCTCCTCGGCGCCGGCGTGGCGGCCTTCGTCTTGTACATGATGTGCTCCAAGAGGCGGAGGAGACCAAGCGGCGTCGGCGGCAAGACGGCGGCGACGACGGAGACATCATCGTCGGTGACCCCAGGGAAGTCGGCATACTCCCTCCCGATGTCGGAGGAGCGGATGAACGCCACGGCGGCGGCAGCGGCGGCGGTGGCGCGCGCGACGCCGGCGTCGCTGGTGGTGCTGCAACGATCGGGCACGGCGGCGTCGACGGTGATGACACTGAACACTGCGGCGGCGGCGGCGGCGGAGGCGGCGAGGAAGCTGCGGTTCGAGGACCTGCTCAGGTCGCCGGCGGAGCTGCTGGGGCGCGGCAGGTTCGGGAGCGCGTACAAGGTGGTGGTGCCCGGCGGCGCCGCGCTGGCGGTGAAGCGGGTGAAGGACGCGGCGGGGGCGGAGGAGGAGGAGGAGTTCCGGCGGCGGATGGAGCGCGTCGGGAAGGCGAGGCACCCGGCCGTGCTGCCGCCGCTGGCGTTCTACTGCGCCATGCAGGAGAAGCTGGTGGTGTACGAGTTCCTCGGCCATGGCAGCCTCGCCAAGCTTCTCCATGGTTCTATAGAGAGCAGCCAGGTCGCCCTGGACTGGCCGGCGCGCCTCCACATCGCCTCCAAGGTCGCCGACGGCATGGCGTTCATGCACGGCGCCCTGCGCGGAGGCGACGGCGACGGCGACGGCGCGAACGCGAACTTGTCGTTCTCATCCTCCTACGAGGAGGACGAGGCCGGCGGCGCCATCGCTCACGGCAACCTCAAGGCCTCCAACATCCTCTTCACGGCCACCATGGAGCCCTGCATCAGCGAGTACGGCGTCACCGCGCCGCCGCCGCCGTCGTCGGCGCCAGCGGCGGCGCTTCGCGCCGACGTGCGCGCGTACGGCGTGCTGCTGCTGGAGCTGCTCACGGGGAAGGCCACGGCAGCGGACGGCGCCGAGCTGTCGCGGTGGGTGACGGCCGTCATCCGGGAGGAGTGGACAGCCGAGGTGTTCGACCGCGCGATGCTCTCCTCCGCCGGCGCCGGCGGCGACACCGTCGCCAGCGAGCAGCGGATGGTGCGCCTGCTGCAGGTCGCCATGAGATGCATCGACGACGCCTCCTCGCCGTCGCCGCCGCCCACCATGAGGGAGGTCGCTGGCATGGTGAACGCCATCCGCGAGGAAGACGACATGTCGCTCTCCTCGGAGGCATGA More
Protein seq		MEKSKVVVFAGRVLAIVALLLACCCMAAAAQGGEGARVRESLIGFLTELAGGDKERARGIGWDASVEPCDGNRTVWPGVGCNGAPAGDGRITAIVLERKGLDGTINAASLCAAAPALRVLSLEGNALRGDLPAAISGCARLTHIYVGDNRLSGSLPPSLAELASLHVLNVSRNSFSGEIPAELSKLGLVRFCVNDNRFNGAIPEFELSRFEHFSVANNNLTGPIPDDAGDFGRDSFSGNSDGLCGRPDFPPCPPPPSSGENDGKRRRRARTIVMCLGYVLLGAGVAAFVLYMMCSKRRRRPSGVGGKTAATTETSSSVTPGKSAYSLPMSEERMNATAAAAAAVARATPASLVVLQRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLRSPAELLGRGRFGSAYKVVVPGGAALAVKRVKDAAGAEEEEEFRRRMERVGKARHPAVLPPLAFYCAMQEKLVVYEFLGHGSLAKLLHGSIESSQVALDWPARLHIASKVADGMAFMHGALRGGDGDGDGANANLSFSSSYEEDEAGGAIAHGNLKASNILFTATMEPCISEYGVTAPPPPSSAPAAALRADVRAYGVLLLELLTGKATAADGAELSRWVTAVIREEWTAEVFDRAMLSSAGAGGDTVASEQRMVRLLQVAMRCIDDASSPSPPPTMREVAGMVNAIREEDDMSLSSEA
Function		Probable inactive receptor kinase At2g26730 [UniProtKB/Swiss-Prot:O48788]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os09g0376600	Os09t0376600-00	Chr09	12627180	12629654	+	irgsp1_rep
CDS seq	ATGGAGAAGAGTAAGGTCGTCGTCTTTGCCGGTCGGGTGCTCGCGATAGTAGCGTTGCTGCTGGCGTGCTGCTGCATGGCGGCGGCGGCGCAGGGCGGGGAGGGGGCTAGGGTGAGGGAGTCGCTCATCGGATTCCTGACCGAGCTCGCCGGCGGCGACAAGGAGAGAGCGCGCGGCATCGGGTGGGACGCGTCGGTCGAACCGTGCGACGGCAACCGGACGGTGTGGCCCGGCGTCGGCTGCAACGGCGCCCCCGCCGGCGATGGCCGGATCACAGCCATCGTGCTGGAGCGCAAGGGGCTGGACGGCACCATCAACGCGGCGTCGCTCTGCGCCGCCGCGCCCGCGCTCCGCGTGCTGAGCCTGGAGGGCAACGCGCTGCGCGGCGACCTCCCCGCGGCCATCTCCGGCTGCGCCAGGCTGACGCACATCTACGTCGGCGACAACCGCCTCTCCGGCAGCCTCCCGCCGTCGCTCGCCGAGCTCGCCAGCCTCCACGTGCTCAACGTCTCCAGGAACAGCTTCTCCGGCGAGATCCCCGCCGAGCTCAGCAAGCTCGGCCTCGTGAGATTCTGCGTCAACGACAACCGTTTCAACGGCGCCATCCCGGAGTTCGAGCTGTCCAGGTTCGAGCACTTCAGCGTCGCGAACAACAACCTCACCGGCCCGATCCCCGACGACGCCGGCGACTTCGGCCGCGACAGCTTCTCCGGCAACTCGGACGGCCTGTGCGGCCGGCCGGACTTCCCGCCGTGCCCGCCCCCGCCGAGCTCCGGCGAGAACGATGGGAAGAGGAGGAGGAGGGCGCGGACGATCGTCATGTGCCTCGGCTACGTCCTCCTCGGCGCCGGCGTGGCGGCCTTCGTCTTGTACATGATGTGCTCCAAGAGGCGGAGGAGACCAAGCGGCGTCGGCGGCAAGACGGCGGCGACGACGGAGACATCATCGTCGGTGACCCCAGGGAAGTCGGCATACTCCCTCCCGATGTCGGAGGAGCGGATGAACGCCACGGCGGCGGCAGCGGCGGCGGTGGCGCGCGCGACGCCGGCGTCGCTGGTGGTGCTGCAACGATCGGGCACGGCGGCGTCGACGGTGATGACACTGAACACTGCGGCGGCGGCGGCGGCGGAGGCGGCGAGGAAGCTGCGGTTCGAGGACCTGCTCAGGTCGCCGGCGGAGCTGCTGGGGCGCGGCAGGTTCGGGAGCGCGTACAAGGTGGTGGTGCCCGGCGGCGCCGCGCTGGCGGTGAAGCGGGTGAAGGACGCGGCGGGGGCGGAGGAGGAGGAGGAGTTCCGGCGGCGGATGGAGCGCGTCGGGAAGGCGAGGCACCCGGCCGTGCTGCCGCCGCTGGCGTTCTACTGCGCCATGCAGGAGAAGCTGGTGGTGTACGAGTTCCTCGGCCATGGCAGCCTCGCCAAGCTTCTCCATGGTTCTATAGAGAGCAGCCAGGTCGCCCTGGACTGGCCGGCGCGCCTCCACATCGCCTCCAAGGTCGCCGACGGCATGGCGTTCATGCACGGCGCCCTGCGCGGAGGCGACGGCGACGGCGACGGCGCGAACGCGAACTTGTCGTTCTCATCCTCCTACGAGGAGGACGAGGCCGGCGGCGCCATCGCTCACGGCAACCTCAAGGCCTCCAACATCCTCTTCACGGCCACCATGGAGCCCTGCATCAGCGAGTACGGCGTCACCGCGCCGCCGCCGCCGTCGTCGGCGCCAGCGGCGGCGCTTCGCGCCGACGTGCGCGCGTACGGCGTGCTGCTGCTGGAGCTGCTCACGGGGAAGGCCACGGCAGCGGACGGCGCCGAGCTGTCGCGGTGGGTGACGGCCGTCATCCGGGAGGAGTGGACAGCCGAGGTGTTCGACCGCGCGATGCTCTCCTCCGCCGGCGCCGGCGGCGACACCGTCGCCAGCGAGCAGCGGATGGTGCGCCTGCTGCAGGTCGCCATGAGATGCATCGACGACGCCTCCTCGCCGTCGCCGCCGCCCACCATGAGGGAGGTCGCTGGCATGGTGAACGCCATCCGCGAGGAAGACGACATGTCGCTCTCCTCGGAGGCATGA More
Protein seq	MEKSKVVVFAGRVLAIVALLLACCCMAAAAQGGEGARVRESLIGFLTELAGGDKERARGIGWDASVEPCDGNRTVWPGVGCNGAPAGDGRITAIVLERKGLDGTINAASLCAAAPALRVLSLEGNALRGDLPAAISGCARLTHIYVGDNRLSGSLPPSLAELASLHVLNVSRNSFSGEIPAELSKLGLVRFCVNDNRFNGAIPEFELSRFEHFSVANNNLTGPIPDDAGDFGRDSFSGNSDGLCGRPDFPPCPPPPSSGENDGKRRRRARTIVMCLGYVLLGAGVAAFVLYMMCSKRRRRPSGVGGKTAATTETSSSVTPGKSAYSLPMSEERMNATAAAAAAVARATPASLVVLQRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLRSPAELLGRGRFGSAYKVVVPGGAALAVKRVKDAAGAEEEEEFRRRMERVGKARHPAVLPPLAFYCAMQEKLVVYEFLGHGSLAKLLHGSIESSQVALDWPARLHIASKVADGMAFMHGALRGGDGDGDGANANLSFSSSYEEDEAGGAIAHGNLKASNILFTATMEPCISEYGVTAPPPPSSAPAAALRADVRAYGVLLLELLTGKATAADGAELSRWVTAVIREEWTAEVFDRAMLSSAGAGGDTVASEQRMVRLLQVAMRCIDDASSPSPPPTMREVAGMVNAIREEDDMSLSSEA More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_09g0376600	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os09g20970	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_09g0008260	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_09g0008240	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_09g0008470	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_09g0008270	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_09g0008420	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_09G0214500	RBH	0.0657955	0.070701	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_09g0008360	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_09G0195400	RBH	0.0181585	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_09g0008350	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_09g0008160	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_09g0008060	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_09g0008090	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_09g0008110	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_09G008660	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_09g0008460	RBH	0.0	0.0	0.334241

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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