Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0374900 | OGI:09037030 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:12536561-12539847 | ||||||||
| Gene Symbol | OsSTRL15, STRL15, OsSTRL16, STRL16, OsSTRL17, STRL17, OsSTRL18, STRL18 | ||||||||||
| DNA seq | ATGGCGGCTTCTTCTCCTCCCATTGTCATGGAGGCCAAGAAGAAGTGCCCATCAGCTGCCATGTGGCCGTGCTTGTCTCCCCGGGCGGCAGTGCTCATTGCGCTCCTCCTCTTGCCGGCGGCCATGGCGGCGGCGGCGGCGGCGGCCGGCGGCCACGGCGAGGAGATGAAGTCCATCTACGCCGGGCCCAAGGTCGTGCCCGTGCGGCTGGGCCGGCCGGCGTTCGGCCCGGAGAGCCTCGCCTTCGACCACCGCGGCGGCGGCCCCTACACCGGCGTCTCCAACGGCCGCGTCCTCCGGTGGCGCGCCGACCGCCGCCGCCCCGGCTGGACCGAGTTCGCCCACAACTACAAGCACGCGTAAGCTCTCAATCACAGCTAATGACATGGCGCATGAGACTCACCGGCGGCGTACGGGCGGCGGCGCGTGGTGTTGATTTGCAGGACGGTGGCGGAGTGCGCAGCGAGGAAGAAGGCGGCGGCGGCGGCGGAGAGCGTGTGCGGGCGGCCGCTGGGGGTGCAGTTCGACCGGAGGACGGGCGAGATGTACATCGCGGACGCGTACCTGGGGCTGATGAGGGTGGGGCGGCGCGGCGGGATGGCGGAGGTGGTGGCGGCGGAGGCCGGCGGCGTGGCGCTCAACTTCGCGAACGGGGTGGACGTCGACCAAGCCACCGGCGACGTCTACTTCACCGATAGCAGCACCACGTACAAGCGGAGGTACGTACGTATGGGCTACCTATTGGGCTACATGGTACTCCCTCCGTATTTTAATATATGACATTGTTCACAGTTTGATCAACATTTGACCATTTATTTTATTTAAAAATATATGTTATTATTATTTATTTTAGTGCAATTTAATTTATCATCAAATGTTCTTTAAATATGACATTAATATTTTTATATTTACACAAAAATTTAAATAAGATAAATCTTCAAAAGTTGGTAAAAAAAAGTCAACTGCGTCATGCATTAAAATATGGAATGGGTACTTTTTTTTCATTGCAAAATATAGTAATATAATATTGGTTAAATGGAACATGCTCTAATACCACTAATTTGGTCAGGTGGTCTGTCTGGGTTCTTATATTTTAAAACAGATGGAGTATGCAAGCACAACTGCTTCGAAACAAAGTGTTAAAAAAATATGATTTGGTTTGCGAGTTATAGTTGCATTTAATGGATTTTATTTGATCCTTTCCCCGACTACGTAGCTGTATGTCACACAATAGTTTAAGGGTAATTTAGACTTATATTTCTTAAATAAAAGTGACTGGGGAAGTACCTCATTGTCTTCAAATGCCACTTTAGCACTAAATTGTATTGTAATGCATAATTTAGCTGTAATATCTACTACAATTACGAAAATTGTAATATACCGTACTTTTTTCACGCACTACTGTAAAAATAATTTTCCAAGACACACTCAGGTTCCATTTCTACCGGCATATTGGTAGGGGCGGGCTATTTTTTAAAATGCATTTTACCCATATGTAAAAATACTCCCATCGTCTCAAAATATAAGGGATTTGTGTCATATCCTCTAAAATCTCTTATATTTTGAGATGGAGGGAGTAGTTAATTTGGTAGTACCATGTCAAATGGATTTACGGGTTCAAGAAAATGTCTGACAACAGTGAACCATGTACGTATATCAATATTGATTTCACTGTCTATTTTTCCTGGGGCAAGTTAGCATATATAGTACAGTATTGCAGGGGACAACGGACATATTAACATTATTATGGTGAATTACTACAGTAGATAAGAATGTCATTGGAGTTATGAACATTTATTAATTAGCTGGATCGAGAAACAAATGATCATCTGCATAGTAGTTGTACTAGCTCAGGTTTTGGATCTCAATTAAAACAGGGGAATTCTTGTGATAAGTAAGTGGAGTACTATTTCCGTAGGTTTAATTAGAGCAAGTTTAATAGTGTAGCTAATTGTTGGTTTCAAAACAACTATAGCTAATCTAATAGTCCACTCATATAATAGTTAACTATAAAAATATACTACAACATTAATACTCGGTCCCACCTCTCATACACACATAACGTTTTGGAGTCCGTGTTGCAGCCGGCTACAAATCTATAGCCCGCTTTCTTCTCTCTCTTCTCTTTTTTTTCTCGATATGTAGTTATAGCTGACTTATAACTTGCTATTGTACCTGCTCTTAAGGCACTAAGTTATATTTACGACATCACATTCAGAAAACTTCTTGCACTACATATTGATTACATAAATTTACATTTTAATTGCACTATAAATAACAGGAATTACATTGTAACTAAACTACTAGTAAACACTATTTAGAATTAGATTTATGATAAAAGCAAATGACTAGAAAGATATGAGAGATTTTTTTAAAATAATGGGAGGAGAATTTTGTTATGTGAAATTGCTAGAAAACTTGTAAATTTGTTTTTACTTCCAAAACTTTCAGATTTGTGGCCATCAAATCACCTTGAGATTTGAGCATAAAGAGAAAATTGCTAGAAATAAATTTTCGCACGGGTCATGCCTTAAGATTTGTGCATGAAGTTATCCGATGCTAACCAACTAAATTATATAAGTTTTTTATATAGCTACATTTCTATTACAATATAATTACATTTCAATTATATTATAGTTGCATTTGAAAAAGATACTAGGATATATGAAAAATAGAAGCATACTTTCTAGTGCAAGTTGGGTAATTAAGGAGGTTTAATTAACCATCATTGTGGTAATATAGTCTGTAAAACTAATTAATCCGTGCGGTGCAGCGACTACCTGCTGGTGGTGCTCTCCGGCGACGCGACGGGGCGGCTGCTCCGGTACGAGCCGCGGACGGGCAACGTCACCGTGCTCGAGTCCGGCCTCGCCTTCCCCAACGGCGTCGCCGTCAGCGCCGACGGCACCCACCTCGTCGTCGCCGAGACGGCCTCCTGCCGGCTGCTCCGCCACTGGCTCCGCGGCAGCAACGCCGGCGCCACCGAGGTTCTCGCCGACCTCCCCGGCTACCCGGACAACGTGCGCCACGCCGCCGCCGACGGCGGCCGCGGCGCGTCGTACTGGGTCGCGCTCAACCGCGACAAGGCGTGGACCGTGAACGGCACGACGCCGGCGTCCGTGGCCGCCGTCAGGGTGGTCGTCGACGACGGCGGCAGCAAGGTGGACGTGGCGCTGCGCGGGTTCGGCGGCGCCACGGTGAGCGAGGTGGTGGAGCGGAACGGGTCGCTGTGGTTCGGCTCCGTCGACACGCCGTACGTCGGCTTGCTCAAGCTCACCTCGCTCTAG
More
|
||||||||||
| CDS seq | ATGGCGGCTTCTTCTCCTCCCATTGTCATGGAGGCCAAGAAGAAGTGCCCATCAGCTGCCATGTGGCCGTGCTTGTCTCCCCGGGCGGCAGTGCTCATTGCGCTCCTCCTCTTGCCGGCGGCCATGGCGGCGGCGGCGGCGGCGGCCGGCGGCCACGGCGAGGAGATGAAGTCCATCTACGCCGGGCCCAAGGTCGTGCCCGTGCGGCTGGGCCGGCCGGCGTTCGGCCCGGAGAGCCTCGCCTTCGACCACCGCGGCGGCGGCCCCTACACCGGCGTCTCCAACGGCCGCGTCCTCCGGTGGCGCGCCGACCGCCGCCGCCCCGGCTGGACCGAGTTCGCCCACAACTACAAGCACGCGACGGTGGCGGAGTGCGCAGCGAGGAAGAAGGCGGCGGCGGCGGCGGAGAGCGTGTGCGGGCGGCCGCTGGGGGTGCAGTTCGACCGGAGGACGGGCGAGATGTACATCGCGGACGCGTACCTGGGGCTGATGAGGGTGGGGCGGCGCGGCGGGATGGCGGAGGTGGTGGCGGCGGAGGCCGGCGGCGTGGCGCTCAACTTCGCGAACGGGGTGGACGTCGACCAAGCCACCGGCGACGTCTACTTCACCGATAGCAGCACCACGTACAAGCGGAGCGACTACCTGCTGGTGGTGCTCTCCGGCGACGCGACGGGGCGGCTGCTCCGGTACGAGCCGCGGACGGGCAACGTCACCGTGCTCGAGTCCGGCCTCGCCTTCCCCAACGGCGTCGCCGTCAGCGCCGACGGCACCCACCTCGTCGTCGCCGAGACGGCCTCCTGCCGGCTGCTCCGCCACTGGCTCCGCGGCAGCAACGCCGGCGCCACCGAGGTTCTCGCCGACCTCCCCGGCTACCCGGACAACGTGCGCCACGCCGCCGCCGACGGCGGCCGCGGCGCGTCGTACTGGGTCGCGCTCAACCGCGACAAGGCGTGGACCGTGAACGGCACGACGCCGGCGTCCGTGGCCGCCGTCAGGGTGGTCGTCGACGACGGCGGCAGCAAGGTGGACGTGGCGCTGCGCGGGTTCGGCGGCGCCACGGTGAGCGAGGTGGTGGAGCGGAACGGGTCGCTGTGGTTCGGCTCCGTCGACACGCCGTACGTCGGCTTGCTCAAGCTCACCTCGCTCTAG
More
|
||||||||||
| Protein seq | MAASSPPIVMEAKKKCPSAAMWPCLSPRAAVLIALLLLPAAMAAAAAAAGGHGEEMKSIYAGPKVVPVRLGRPAFGPESLAFDHRGGGPYTGVSNGRVLRWRADRRRPGWTEFAHNYKHATVAECAARKKAAAAAESVCGRPLGVQFDRRTGEMYIADAYLGLMRVGRRGGMAEVVAAEAGGVALNFANGVDVDQATGDVYFTDSSTTYKRSDYLLVVLSGDATGRLLRYEPRTGNVTVLESGLAFPNGVAVSADGTHLVVAETASCRLLRHWLRGSNAGATEVLADLPGYPDNVRHAAADGGRGASYWVALNRDKAWTVNGTTPASVAAVRVVVDDGGSKVDVALRGFGGATVSEVVERNGSLWFGSVDTPYVGLLKLTSL |
||||||||||
| Function | Protein STRICTOSIDINE SYNTHASE-LIKE 10 [UniProtKB/Swiss-Prot:Q4V3D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0374900 | Os09t0374900-00 | Chr09 | 12536561 | 12539847 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGCTTCTTCTCCTCCCATTGTCATGGAGGCCAAGAAGAAGTGCCCATCAGCTGCCATGTGGCCGTGCTTGTCTCCCCGGGCGGCAGTGCTCATTGCGCTCCTCCTCTTGCCGGCGGCCATGGCGGCGGCGGCGGCGGCGGCCGGCGGCCACGGCGAGGAGATGAAGTCCATCTACGCCGGGCCCAAGGTCGTGCCCGTGCGGCTGGGCCGGCCGGCGTTCGGCCCGGAGAGCCTCGCCTTCGACCACCGCGGCGGCGGCCCCTACACCGGCGTCTCCAACGGCCGCGTCCTCCGGTGGCGCGCCGACCGCCGCCGCCCCGGCTGGACCGAGTTCGCCCACAACTACAAGCACGCGACGGTGGCGGAGTGCGCAGCGAGGAAGAAGGCGGCGGCGGCGGCGGAGAGCGTGTGCGGGCGGCCGCTGGGGGTGCAGTTCGACCGGAGGACGGGCGAGATGTACATCGCGGACGCGTACCTGGGGCTGATGAGGGTGGGGCGGCGCGGCGGGATGGCGGAGGTGGTGGCGGCGGAGGCCGGCGGCGTGGCGCTCAACTTCGCGAACGGGGTGGACGTCGACCAAGCCACCGGCGACGTCTACTTCACCGATAGCAGCACCACGTACAAGCGGAGCGACTACCTGCTGGTGGTGCTCTCCGGCGACGCGACGGGGCGGCTGCTCCGGTACGAGCCGCGGACGGGCAACGTCACCGTGCTCGAGTCCGGCCTCGCCTTCCCCAACGGCGTCGCCGTCAGCGCCGACGGCACCCACCTCGTCGTCGCCGAGACGGCCTCCTGCCGGCTGCTCCGCCACTGGCTCCGCGGCAGCAACGCCGGCGCCACCGAGGTTCTCGCCGACCTCCCCGGCTACCCGGACAACGTGCGCCACGCCGCCGCCGACGGCGGCCGCGGCGCGTCGTACTGGGTCGCGCTCAACCGCGACAAGGCGTGGACCGTGAACGGCACGACGCCGGCGTCCGTGGCCGCCGTCAGGGTGGTCGTCGACGACGGCGGCAGCAAGGTGGACGTGGCGCTGCGCGGGTTCGGCGGCGCCACGGTGAGCGAGGTGGTGGAGCGGAACGGGTCGCTGTGGTTCGGCTCCGTCGACACGCCGTACGTCGGCTTGCTCAAGCTCACCTCGCTCTAG
More
|
|||||||
| Protein seq | MAASSPPIVMEAKKKCPSAAMWPCLSPRAAVLIALLLLPAAMAAAAAAAGGHGEEMKSIYAGPKVVPVRLGRPAFGPESLAFDHRGGGPYTGVSNGRVLRWRADRRRPGWTEFAHNYKHATVAECAARKKAAAAAESVCGRPLGVQFDRRTGEMYIADAYLGLMRVGRRGGMAEVVAAEAGGVALNFANGVDVDQATGDVYFTDSSTTYKRSDYLLVVLSGDATGRLLRYEPRTGNVTVLESGLAFPNGVAVSADGTHLVVAETASCRLLRHWLRGSNAGATEVLADLPGYPDNVRHAAADGGRGASYWVALNRDKAWTVNGTTPASVAAVRVVVDDGGSKVDVALRGFGGATVSEVVERNGSLWFGSVDTPYVGLLKLTSL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0374900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g20810 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008130 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008160 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008310 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0213400 | RBH | 0.03146 | 0.0097785 | 0.0071305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008250 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0194300 | RBH | 0.084105 | 0 | 0.082392 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007960 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008350 | RBH | 0.0 | 0.0 | 0.0 |
