Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0245500 | OGI:09005370 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:3404388-3407886 | ||||||||
| Gene Symbol | 2ODD33, 2-ODD33, Os2-ODD33, Os2ODD33 | ||||||||||
| DNA seq | CAATTAAGGATGCATTCCATTCTTCAATATGACTGTTCTACTGTGCTATGACAAATTTACAAATGATTTTATTTTAGTGACGAATGTTGCGATCAGACATTGGAGTACAATGCATGTTCTTTTCCACAAATTTTACATGACGAAGTTTGTCAAGACTTTCTGAACCAAGTGTTCTCCGTACACAACCTTTTCATACTTGGCAACACCACCTGTTCTCTCCCGGCAGAACTCAACAGGCTCTACGGCAGCATCGAAGTTTGACTGTAGCATTCAAAATTCAGAAAGAAAAGAAAGAACATGAGAAATCAACTTCACATAAACTATGTGTAGGATTGAGACTAGAGATTAAGCAAGACATACCTCATAGAAGAATGCAACAGATACACGGTAGCGAGGGGAGTTGTTAACAACTCGATGAAGTGTTGGCTGATATATTCCGTTTGACCAAACCTAACCAAAGAAGACAATTGATAAGCGTCTCATGTTTGATGACCATAAAGATATCAGTGAAACTGCAAAGGAAGAAAAGAACCTTCAGCATGTCACCGATGTTGCAGACGAAGGTTCCTGGGATTGGTTTGGCATATATCCATTCACCTGATTGGTTTCTGACCTGAAACATATTCACCAGATATTACAAACGGATCAAAATTGTTTGCTTCACCCTGTTTCAGGCTAAATATGGACAGTGGGAAGAAACTGTAAGATGCTAATTGCATACTCCTAATTACTAATGCATCTTAGAAGATGCGTAGAATGTTAGAAAAGTAGAGAAGTATCTCTTGTTAGGTTATATGAGTCAAATTCTGTACAAAGATGCCCAGCTCAGATGCACTGCACTCTAATGAAAAATAAAACAATCTGAAATCAAGTTCTTATCTTCTATCCATTCTACGTCCCCTCTTCTTTATTACTAGACAGAGATAACATGGAAATAACTTTGGCGATAAGAAATTGCAAGGAGAAAAGGCCACCAAGCAAACAAACAGTGTGGCCATAAAATATCTCAATTAAAACAATCTCTGAATAGGGTAACCAATGATATTTGTCCAGATTTCTGGTGATAAACAACCAGTTTTTTAAATCCACATTGAAAATTGGAATCTGAGTAGAGTTCGAGGGCAAAGACATGACTTATTCCTATAAGATATGTATTAGATGGTGAAGAAATAAGTACCTCAAGGGCGCATATGTCATCATCCTGATTAACCAATGTCAGAAGACCTACAAATTTAACAAATGATAAATATGATCCCCATGGTTTTGATATAACCTCTACTGATTTTTTAGGATTAAAACACAAATAAAGAAAAAACAAACTTTCCACAATACATCAATCAAAGAAACATATATGCGTATTTCCACATATGAGTTCAATTCCAACAGAACTTTTGAAAGATATGTACTAACCATAGTCTGTGTGAGCTCCACTGAATTGATCGTAGAATGGATGCCATGTAAAAGAAAAGCAGTGTCAGATGACTCTACACTCAATACACACGATTTGCAGGATATATTACCAAATAAAAACGTAGATACAATTTGCTCACCACCCAGTATCAGTGCGCTGCTCTTCTGGAATATCAGTTGATACAGGATAACCGATCAGCCTGCAAACCCAAAAAGGATCTCCTGCGGTTGTACCTTCAAAAGCATCAACTGGCGCACCCAACGCCAAGGCTATACCTCGCATGATCTTTCTTGAAAGATCTACAAGTAAATTTTCATAACAAATGCTGTCACTCATAAGTAACAAATAATAAATGGATCAATAGCATACATGCACAAATAAAGATTTAAACTAAGTATAGAAGTTAACCTCTTAGAAGGCTGATATAGTTTTCCAGCAGTACATCAAAATTTGATGGATATTTGGGCCTGCATAAAAATAAATGAACCGGTTATTTGAATTTTGATAGATCTCTGACCTAAAATACTCAAAGGCAGTCTACCAAAGTTCAGAACTTCTTCAGTAATAGCTGAAGTAATTCAACAAGCAATAATTCTGTGGTACCTAGTACCAACTATTTAATATGCTTCTAGTAACAAAAATACATTGAAGTATGCAAGTACAATTGTAGCCATAACTTCTATTTTCTTTACTATAATTCATAATTCTACCCATATTGTAACATAATACATGTTGGTACTAGATAAAATATTGTAAATATAAATTTTATTCCCTCACATTCTTCCAAATAGAGGTGTGCTATAAGCTAAATTATTTATATTGTGAGTATTATTAAAATATGCAATAGATCAAAACTGGGGTATTGTTTTATATCAAAGTCAAGTACATAATATCTGTCTCGCATATGTCAAATAATACAGTGCTGTAGGAAAAAAACAGAGATGGAGAGTTGGATACATACCACAAATTAGATCCTACCATTGGTTTAGCAAGGTCTCCATATTTACCAGGTTCAATAGGCGTGTAGCACTGTGATGTTTTTTCTTCCAGGGATTAACTCAGGAACAAATTAATGGATGATAAAAAAATAATAAAGAGAAAATTAAACTTACATCAATTGCTTCATGCATGTCAGGTTTACCCTTGGTAATATTTTCACCAACTCTTTGGTACCCTCTGACAGTAAAGACAACAAAGTTATGTTATACAGGAAGGAGGATTAGAAGGATCCAATGTGGAACAAGGAAAAATGTTGGAAACTTAAAAACAGGTTGAAGCTGTCATTTTATATCACACCTGTATCCACTCTGAGGTGTCATTTTAATCTTGAGTTTTTCCTCATAAGGAAGCTGAAAGAACTTCTGTGTCACATCCCTAACTTGCTTCATTAGCGAGTCAGCAATCCCATGGCCTTTCTGTTAGTAACATACAGACACCATTTGATTAGGATTGATATTGTGTAGCTAGTCTGCTGTACCCATTGTAGTAAACTGATGCTAAAAAGTCTGAAGTAGGCTAGTAAGTAAATAAGTAAATTTTACCACATAAAAGAATCCAGCCTCCCTGCAGGCATCGTCCAACATTTGCACAACTTGCAGCAAATCCTCGTCATTGACCATGCTCGGATCATCAATCTTTCCGACAAGGGGACTAATGTCTGACAAATGAACAAAGATAGAGGAATTCTTCAAATGGAGATTTCAAAGTACAAGCATATATCATCTCATCCCACCAAGTATCTTTACACAAAATTCTACAAAAGCTGTATCTAGTATCCTTTGCAGACAAGCAGTCGTAATCTGTGGTTAATTGAACTAACTGCAACTGGTGGTGGCAAAGCAGGTAAAAGAAAAAAAAGAATCCCACGCAGGATTCCAGAATCTGAATCTGAATCTTACCGATCAAGGGGATTGCCTTGAAGTCAGAACCCATGGTGATGCAGGGAGAGAAGCCGCCTGTGGGGACACGAACGCGGCGGCGGTCGGGCGATGGCGATTCCGGCGGCGGGCGGGCGGGCGAAGAGTGGCGTGATAGTGCGGTTGGGTTGGGTTGGGTTGGGTTGGGGATTTTGGATTGCTGCGATAGCGG
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| CDS seq | CCGCTATCGCAGCAATCCAAAATCCCCAACCCAACCCAACCCAACCCAACCGCACTATCACGCCACTCTTCGCCCGCCCGCCCGCCGCCGGAATCGCCATCGCCCGACCGCCGCCGCGTTCGTGTCCCCACAGGCGGCTTCTCTCCCTGCATCACCATGGGTTCTGACTTCAAGGCAATCCCCTTGATCGACATTAGTCCCCTTGTCGGAAAGATTGATGATCCGAGCATGGTCAATGACGAGGATTTGCTGCAAGTTGTGCAAATGTTGGACGATGCCTGCAGGGAGGCTGGATTCTTTTATGTGAAAGGCCATGGGATTGCTGACTCGCTAATGAAGCAAGTTAGGGATGTGACACAGAAGTTCTTTCAGCTTCCTTATGAGGAAAAACTCAAGATTAAAATGACACCTCAGAGTGGATACAGAGGGTACCAAAGAGTTGGTGAAAATATTACCAAGGGTAAACCTGACATGCATGAAGCAATTGATTGCTACACGCCTATTGAACCTGGTAAATATGGAGACCTTGCTAAACCAATGGTAGGATCTAATTTGTGGCCCAAATATCCATCAAATTTTGATGTACTGCTGGAAAACTATATCAGCCTTCTAAGAGATCTTTCAAGAAAGATCATGCGAGGTATAGCCTTGGCGTTGGGTGCGCCAGTTGATGCTTTTGAAGGTACAACCGCAGGAGATCCTTTTTGGGTTTGCAGGCTGATCGGTTATCCTGTATCAACTGATATTCCAGAAGAGCAGCGCACTGATACTGGGTGTGGAGCTCACACAGACTATGGTCTTCTGACATTGGTTAATCAGGATGATGACATATGCGCCCTTGAGGTCAGAAACCAATCAGGTGAATGGATATATGCCAAACCAATCCCAGGAACCTTCGTCTGCAACATCGGTGACATGCTGAAGGTTTGGTCAAACGGAATATATCAGCCAACACTTCATCGAGTTGTTAACAACTCCCCTCGCTACCGTGTATCTGTTGCATTCTTCTATGAGTCAAACTTCGATGCTGCCGTAGAGCCTGTTGAGTTCTGCCGGGAGAGAACAGGTGGTGTTGCCAAGTATGAAAAGGTTGTGTACGGAGAACACTTGGTTCAGAAAGTCTTGACAAACTTCGTCATGTAA
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| Protein seq | PLSQQSKIPNPTQPNPTALSRHSSPARPPPESPSPDRRRVRVPTGGFSPCITMGSDFKAIPLIDISPLVGKIDDPSMVNDEDLLQVVQMLDDACREAGFFYVKGHGIADSLMKQVRDVTQKFFQLPYEEKLKIKMTPQSGYRGYQRVGENITKGKPDMHEAIDCYTPIEPGKYGDLAKPMVGSNLWPKYPSNFDVLLENYISLLRDLSRKIMRGIALALGAPVDAFEGTTAGDPFWVCRLIGYPVSTDIPEEQRTDTGCGAHTDYGLLTLVNQDDDICALEVRNQSGEWIYAKPIPGTFVCNIGDMLKVWSNGIYQPTLHRVVNNSPRYRVSVAFFYESNFDAAVEPVEFCRERTGGVAKYEKVVYGEHLVQKVLTNFVM |
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| Function | 2-oxoglutarate-dependent dioxygenase 33 [UniProtKB/Swiss-Prot:Q6K332] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0245500 | Os09t0245500-01 | Chr09 | 3404388 | 3407886 | - | irgsp1_rep | ||
| CDS seq | CCGCTATCGCAGCAATCCAAAATCCCCAACCCAACCCAACCCAACCCAACCGCACTATCACGCCACTCTTCGCCCGCCCGCCCGCCGCCGGAATCGCCATCGCCCGACCGCCGCCGCGTTCGTGTCCCCACAGGCGGCTTCTCTCCCTGCATCACCATGGGTTCTGACTTCAAGGCAATCCCCTTGATCGACATTAGTCCCCTTGTCGGAAAGATTGATGATCCGAGCATGGTCAATGACGAGGATTTGCTGCAAGTTGTGCAAATGTTGGACGATGCCTGCAGGGAGGCTGGATTCTTTTATGTGAAAGGCCATGGGATTGCTGACTCGCTAATGAAGCAAGTTAGGGATGTGACACAGAAGTTCTTTCAGCTTCCTTATGAGGAAAAACTCAAGATTAAAATGACACCTCAGAGTGGATACAGAGGGTACCAAAGAGTTGGTGAAAATATTACCAAGGGTAAACCTGACATGCATGAAGCAATTGATTGCTACACGCCTATTGAACCTGGTAAATATGGAGACCTTGCTAAACCAATGGTAGGATCTAATTTGTGGCCCAAATATCCATCAAATTTTGATGTACTGCTGGAAAACTATATCAGCCTTCTAAGAGATCTTTCAAGAAAGATCATGCGAGGTATAGCCTTGGCGTTGGGTGCGCCAGTTGATGCTTTTGAAGGTACAACCGCAGGAGATCCTTTTTGGGTTTGCAGGCTGATCGGTTATCCTGTATCAACTGATATTCCAGAAGAGCAGCGCACTGATACTGGGTGTGGAGCTCACACAGACTATGGTCTTCTGACATTGGTTAATCAGGATGATGACATATGCGCCCTTGAGGTCAGAAACCAATCAGGTGAATGGATATATGCCAAACCAATCCCAGGAACCTTCGTCTGCAACATCGGTGACATGCTGAAGGTTTGGTCAAACGGAATATATCAGCCAACACTTCATCGAGTTGTTAACAACTCCCCTCGCTACCGTGTATCTGTTGCATTCTTCTATGAGTCAAACTTCGATGCTGCCGTAGAGCCTGTTGAGTTCTGCCGGGAGAGAACAGGTGGTGTTGCCAAGTATGAAAAGGTTGTGTACGGAGAACACTTGGTTCAGAAAGTCTTGACAAACTTCGTCATGTAA
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| Protein seq | PLSQQSKIPNPTQPNPTALSRHSSPARPPPESPSPDRRRVRVPTGGFSPCITMGSDFKAIPLIDISPLVGKIDDPSMVNDEDLLQVVQMLDDACREAGFFYVKGHGIADSLMKQVRDVTQKFFQLPYEEKLKIKMTPQSGYRGYQRVGENITKGKPDMHEAIDCYTPIEPGKYGDLAKPMVGSNLWPKYPSNFDVLLENYISLLRDLSRKIMRGIALALGAPVDAFEGTTAGDPFWVCRLIGYPVSTDIPEEQRTDTGCGAHTDYGLLTLVNQDDDICALEVRNQSGEWIYAKPIPGTFVCNIGDMLKVWSNGIYQPTLHRVVNNSPRYRVSVAFFYESNFDAAVEPVEFCRERTGGVAKYEKVVYGEHLVQKVLTNFVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0245500 | RBH | 2.927443 | 1.028032 | 1.520268 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g07020 | RBH | 1.578551 | 0.551334 | 0.312049 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001940 | RBH | 0.486032 | 35.231674 | 6.717236 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0002090 | RBH | 0.000000 | 13.928058 | 2.348707 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002020 | RBH | 0.000000 | 9.978148 | 9.948228 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001910 | RBH | 0.295808 | 0.886499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0002200 | RBH | 1.851170 | 31.124575 | 6.462188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0055500 | RBH | 3.7752 | 9.5905 | 8.6255955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0002150 | RBH | 0.068767 | 4.206459 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0060600 | RBH | 4.6227705 | 8.45063 | 10.3661535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0002000 | RBH | 0.000000 | 0.407288 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0002120 | RBH | 1.605813 | 10.546696 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0002110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002180 | RBH | 0.0 | 18.521599 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002080 | RBH | 0.683847 | 1.988837 | 4.376036 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0002230 | RBH | 0.0 | 22.605757 | 0.0 |
