Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0542100 | OGI:08077180 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:27127762-27129490 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGGTCAGTATTATTACTGTATTTTAGCAGCAGTACAAGTGATGAGGAGTTCTTGTTTTTGTTTCTGCAAGGTTTGTCTCTTTTCATTGGTGATGATTGCGGTTCACAATTTTAACAATTTTGTTTGTGTGTAATCTGCAGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTAACTGAACTCAAACATGCTTCTCTATTAACAGTTCTTTTGTACAAAAACATATTGATTTGTCCATCTGTAGCTTGCAGTGCTGAAATTTTATTTATTGTTGTGTAATATAGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGTATTGTTTTGTTACACCTTATAAAACTTGAGGTTGCACGGCATTAGTAAATTTGTCTACAACAGGCTATTTTGCAATGAGCATGGGAATTGGGCTGGCTTATTTTGGAGATATAGTTTATATAAAACCACTAGGTGTAGCGCTGTCTGAAACCTGATTCTTTAATCTCGGCTAATAGTTTTGTTGGGTTCTGGACCTCAAATTTGGCATGCTACAATACTTCATTTAGGATCAATTCCATTGTTGCATGCACTGCTTTGGTAGAGCTATTTCTGTCTCCTTCCACAAGTGTAAAAATCACTGTGGTTATGCTTTTTTTTGTGTGTTGATTATCATCTCGGTTATGTATAATTTCCCAGACATAAGATACATTTTCATCAGTCTCTAAATAAAACAAAAGGATATTTGGTTTCAGTTTTCGATGTTGAAGACAATCTCATGGTTTGGTAATGTACACTGAAATATACCCATCTGTGCTTTTTTTCTGAAAACAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGTAATTCATGTGCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGCCTAGCCGATTGTACCTTTATTTCTGAAAGCTTAATAGAGTGTTCATGCTCAGATTATGAAATAGCAGAATCTGTTTTCCTACC
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| CDS seq | CCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAG
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| Protein seq | PRNPSPSRRSAAAAVVQGEACVEIAATMMAEEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGGDSGNREDKINELIEKLN |
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| Function | 60S ribosomal protein L7-1 [UniProtKB/Swiss-Prot:Q9SAI5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0542100 | Os08t0542100-01 | Chr08 | 27127762 | 27129490 | + | irgsp1_rep | ||
| CDS seq | CCCCGAAACCCTTCTCCCTCGCGTCGTTCCGCCGCCGCCGCCGTCGTCCAGGGCGAAGCTTGCGTAGAGATAGCGGCGACGATGATGGCGGAGGAGGGGACGCAGCAGCTGCCGTACGTGCGGGAGACGGTGCTGAAGAAGCGGAAGGTGAACGAGGACTGGGCGGTCAAGAACCGGGAGCGGAAGGCGGCCAAGAGGCAGCGCCGCCGCGACGACGGCAAGGGCGCCATCAAGAGGCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGCTCGACTTCGTCCGGATGAAGACCCGCCTCAAGGTCCGCAAGCTCCCCCCCGCCGAGACCCTCAACTCCAAGCTCGTCTTCGCGATTCGCATCCCTGGCACAATGGACTTGCATCCACACATGAGGAGGATTTTGCGCAAGCTGCGGCTGACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACTGACGCTACTATGAAGAGGCTTCTTGTTGTGGAGCCGTTTATCACTTATGGGTTCCCAAATTTGAAGAATGTGAAGGATCTTATTTACAAGAAGGGCCGTGGGTTCCTGGACAAGGAACCTTTCCCTCTTACCAGCAATGATCTCATTGAGAAGGCTCTGGGAGAATATGGCATCATATGTTTGGAAGATCTTGTGCATGAAATCGCATCAGTTGGCCCACACTTCAGAGAAGCTTCAAATTTCCTCATGCCCTTCAAGCTCAAGTGTCCAGAGAGGAGGTTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAG
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| Protein seq | PRNPSPSRRSAAAAVVQGEACVEIAATMMAEEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGGDSGNREDKINELIEKLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0542100 | RBH | 4.332950 | 6.046900 | 5.302427 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g42920 | RBH | 2.404573 | 3.446216 | 1.317855 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024010 | SBH | 0.316704 | 5.938050 | 1.156301 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023820 | SBH | 0.033746 | 1.254771 | 0.776252 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023810 | SBH | 0.207890 | 2.434705 | 0.868126 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024150 | SBH | 0.084890 | 0.192083 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023800 | RBH | 6.126215 | 16.766190 | 15.386531 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023650 | SBH | 0.254197 | 0.139565 | 0.219117 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023030 | RBH | 0.038945 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023390 | RBH | 0.205365 | 5.650491 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023210 | RBH | 4.667920 | 60.070778 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024050 | RBH | 0.105355 | 0.034494 | 0.147899 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023300 | RBH | 0.284061 | 4.511681 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023480 | RBH | 0.183034 | 1.372416 | 0.820114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007600 | SBH | 7.044094 | 147.845703 | 60.680927 |
