Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0520500 | OGI:08074040 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:25870837-25871444 | ||||||||
| Gene Symbol | ARF7B, OsARF7b, OsARF21, DLN216, OsDLN216 | ||||||||||
| DNA seq | GTATAAAATGTTGTTTTTTTTTACCCATTTAGATCTGTAACAGCTTACAGATGGTGATATCTGACAATCTCCATTCTGCAGCTTATACAGCAGCAATATATACACTGTAGTATAGACATATGGACGGGCTATACAAGAGGGTAACAAGGCCATAAAAACATACAGAGAATTAGCACATCTACAAGACTGCAACAGAGACAATAGTCTGAATAATGGAGTAAACTTATAAATGGAGGCTTCTGGGCACTCCAACACAGCCTTCCTCTTGTATCCATATTTATTGAGTTTTCTTGTCGATAAATTTACTGTAAGCTCAAAGTTTCGAAGCCAAAATTATCATTGCCTACTACCATCCTTTGCACTGTCATGAGACTAACAGTCAAAAAAAAGTCGGTCTTGAGGCGACAGCAACTACAGTATGTATGTAAAGTGGGTTTTGATCAGTTTCTACATTCTAGTCGCCGGTTATCCTCCAGGGATGACCCCCATCAGAGCTGCTGCAAGCTTGGTTGGGTAGAAAGCTGTCTCCAAAGTCGCCGACTAATCTCATCTGCATTTCTTCCTGTGGAGAAAGAATCCTGATACATCGTACACATTTCACAAAGTCC
More
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| CDS seq | GACTTTGTGAAATGTGTACGATGTATCAGGATTCTTTCTCCACAGGAAGAAATGCAGATGAGATTAGTCGGCGACTTTGGAGACAGCTTTCTACCCAACCAAGCTTGCAGCAGCTCTGATGGGGGTCATCCCTGGAGGATAACCGGCGACTAG |
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| Protein seq | DFVKCVRCIRILSPQEEMQMRLVGDFGDSFLPNQACSSSDGGHPWRITGD |
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| Function | Auxin response factor 21 [UniProtKB/Swiss-Prot:Q6YZW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0520500 | Os08t0520500-01 | Chr08 | 25870837 | 25871444 | - | irgsp1_rep | ||
| CDS seq | GACTTTGTGAAATGTGTACGATGTATCAGGATTCTTTCTCCACAGGAAGAAATGCAGATGAGATTAGTCGGCGACTTTGGAGACAGCTTTCTACCCAACCAAGCTTGCAGCAGCTCTGATGGGGGTCATCCCTGGAGGATAACCGGCGACTAG |
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| Protein seq | DFVKCVRCIRILSPQEEMQMRLVGDFGDSFLPNQACSSSDGGHPWRITGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0520500 | RBH | 3.846657 | 4.430686 | 9.564184 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40900 | SBH | 2.858889 | 3.234879 | 2.319174 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022460 | SBH | 0.929392 | 29.934679 | 18.515839 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022340 | RBH | 0.698373 | 7.841541 | 5.711076 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022240 | SBH | 2.596968 | 22.340298 | 25.843159 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022370 | RBH | 0.367049 | 0.323087 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0412500 | RBH | 13.9430345 | 35.440649 | 10.82457 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022130 | SBH | 0.379315 | 1.461718 | 3.730093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0434000 | RBH | 15.245565 | 26.162849 | 11.763969 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021490 | SBH | 0.776077 | 0.501721 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021790 | RBH | 0.908134 | 13.661635 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021630 | SBH | 7.412425 | 30.515230 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022440 | SBH | 1.470977 | 1.929534 | 4.421521 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021810 | RBH | 0.507711 | 9.332130 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022140 | RBH | 1.836913 | 25.409557 | 16.799870 |
