Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0518200 | OGI:08073700 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:25719480-25721907 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCAATGGCAAGATCAACAATCTTCTCTGTGGACAAAATCATTAACAGAGATATACACACCTAAAGTTAAGAGAGGGAGAAAAACTCCAGACAAAGTTGGGGCAACCTATTGGTGTGCAGCAAAACGAGTTGCTTAGCCAGCAAAAAAGTAAGTTGATGAGAAAGAAAAATATAACATATCAGGCTAATCATCTGGAGTACAGGGTGTGTTGTTTTTTGTTGAAGCTACCTCTGTCTTGAATTTCTCCCAGACTTCTAAACCCATGGGGTGCCTTACTACATAACGTTTTACGAAATGTTTGTCTGCAGTGGCTAGGAGAGTGCTAAGAGCTAGTCCAGTAGCAATCACTCCTTTCTCCAACAACCAATTGTACATCAAAAACCTAAGCTTGGTTCTCTCCACGGTAAACGAGAGGAATGAAGGGAAAATTACCAGGGTACTCAGAGGATATCCCATATCATTTACAAGGAAGGATATCTTGGATTCAAGGACATGGATCTTCTGATTCAGAACATGTGGAGCCATAGTGATCATCTGCACCACATGTTCCGGGTCCAAACCGGTCTTGACCAAGAAGTCGTAGCGATCTTTTAGCTCGTCACCTTTACCACGAAATGCTTTGAGTCCCCTCGTCATTCGTTCGGATCCTTCCATAAATCCTAAGTTCTGTAAAAATTTCACCTTCTCCTTGAAGGATGCTTCATGGAGATCAACTTTCGGTATGCGGCTGACCTTTGCCCCTAATGAGAATTTCATCAACAGTTGTGGATCCTCCATTACCATCCTGCAAAGGCGCTTCTTCCCTACACTGAGATGTGTCATAATGCTGTTTGGTTTCTTCAATTGGACGGAACCAAGTATTGAACCGTTAGACACCACAAATTTCTTAATGTCCTCTTCACTAACACCAATCTCAGCTAAGAAGAATATGCCCCTTCGCAGGTTCCTCGTGAAATTGTCGACTGACAAATTTGGGAAATTCAGAAAAAGATCAACCAATTCCTTTTTTCCAAACCCAGCTTTTAGCATGACGAGGACTGCCGAGAACAGCATCTTTCCTGAACCACTAAACAAGAAATCGGGATTCTGTCTGACCAATTTGCCAATACCTTCATTAGTGAATCCTAAATCACTGAAGAACTGAGGGACTTGGACCATCTTTCCCCAGTTATAAGACTTCTTTACAGATAAGAATCGGCCAAGCCAGTCTCTCTGAATTCCAACATCATCTAGCCAGCGCAGAATCTTCAATTCCACATTTGGATCACGGACCAGTATGACAGGGCTCGACATCACTAGCTTGATCACACTGGTCTTACTCAACCCTTGATCCTCAAGGGCCTTCAGCTTCGACGCAAGAACTCCATGGCCAAAACTAAACACTTCGGTAGCATCCCTGTATATCCTCCCTATCTTGGTGCGCGCGATGCCATAGTTGCAAAGCACCCGGAAATTGTCGAGCATCGTCTCATCATCATTGAGAAACATGAGATCACGAGGCAACAATGGCTCATACTCGCCCGGCGCGATGCCGATACTCTCGAAGAACGGCTCGAACTCGTTGATAGGGTGGAAGTTGAACAGCCGCACCAACGCCTTGCTGACCCTCTCATCCCTCATCTCCCTCTTCTTCACCTTCGACCTGAAGGGCACCTCCTCCCCCTCCTCCGTGGGCTCCTTCGCCGCATCCTTCACCTTCTCCAGCAGCTTGCTGATGAAGATCGGCGAGCGCTTGCTCATGTGCTCGGCATCACTGAAGCAAATCCCACGCGTGACATGGAGGTACTCCATGAATGCCTTCTGCGCGATGCGGGCGTCGCGCCTCCTCCGCATCTGCTTGACCCTCCGATCATCCACATCCTCAATCCCATCCCCGACGATCGCCGGAGCGGCCGAGAATGGCCGCAGCTGAATCCTGTCACCAACCTGACTGGCCCAGCTCCAGCTCGACGCACATGGTGATGATGAATCATGGACATGCCAAGAACTGACAGCAGCAGCAGCAGCATGACAATGTGGGGTTCTGGATGAGCCCCTGGCAAGGCCATTCCATGGAAGCCACCTGTGGCGAGCGGCTGGCACTGACCGGAGCATGGAGATTCAGCTGAATCCCCCAAAACTTTTTGGAGAACAAACTGTATGTATCACTGTATCAGTATCACTGACGCAAGAAAAGAAATCCACGGCGAACTGGGCACTCCCTCCCTCCTAGAAAGAAAGATTTGGATTGGATGAAGAGAACTGGATGAACAAACACACTCACTCTCAGAATAATCCGAGCATGGTTGGGCTTGCCGCCAATCTCCACTCGGCTACAGTCCAGTAGAGCGGAGAGCGAGGTGGAGGTCGTGCTTCGGTGGTGGAAGGAGGGCTCGCGGAAGGGAGGCGCGCTCGGGGGAGCCACTCGCCGGCGCCGCCGCCGCGAG
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| CDS seq | ATGCTCCGGTCAGTGCCAGCCGCTCGCCACAGGTGGCTTCCATGGAATGGCCTTGCCAGGGGCTCATCCAGAACCCCACATTGTCATGCTGCTGCTGCTGCTGTCAGTTCTTGGCATGTCCATGATTCATCATCACCATGTGCGTCGAGCTGGAGCTGGGCCAGTCAGGTTGGTGACAGGATTCAGCTGCGGCCATTCTCGGCCGCTCCGGCGATCGTCGGGGATGGGATTGAGGATGTGGATGATCGGAGGGTCAAGCAGATGCGGAGGAGGCGCGACGCCCGCATCGCGCAGAAGGCATTCATGGAGTACCTCCATGTCACGCGTGGGATTTGCTTCAGTGATGCCGAGCACATGAGCAAGCGCTCGCCGATCTTCATCAGCAAGCTGCTGGAGAAGGTGAAGGATGCGGCGAAGGAGCCCACGGAGGAGGGGGAGGAGGTGCCCTTCAGGTCGAAGGTGAAGAAGAGGGAGATGAGGGATGAGAGGGTCAGCAAGGCGTTGGTGCGGCTGTTCAACTTCCACCCTATCAACGAGTTCGAGCCGTTCTTCGAGAGTATCGGCATCGCGCCGGGCGAGTATGAGCCATTGTTGCCTCGTGATCTCATGTTTCTCAATGATGATGAGACGATGCTCGACAATTTCCGGGTGCTTTGCAACTATGGCATCGCGCGCACCAAGATAGGGAGGATATACAGGGATGCTACCGAAGTGTTTAGTTTTGGCCATGGAGTTCTTGCGTCGAAGCTGAAGGCCCTTGAGGATCAAGGGTTGAGTAAGACCAGTGTGATCAAGCTAGTGATGTCGAGCCCTGTCATACTGGTCCGTGATCCAAATGTGGAATTGAAGATTCTGCGCTGGCTAGATGATGTTGGAATTCAGAGAGACTGGCTTGGCCGATTCTTATCTGTAAAGAAGTCTTATAACTGGGGAAAGATGGTCCAAGTCCCTCAGTTCTTCAGTGATTTAGGATTCACTAATGAAGGTATTGGCAAATTGGTCAGACAGAATCCCGATTTCTTGTTTAGTGGTTCAGGAAAGATGCTGTTCTCGGCAGTCCTCGTCATGCTAAAAGCTGGGTTTGGAAAAAAGGAATTGGTTGATCTTTTTCTGAATTTCCCAAATTTGTCAGTCGACAATTTCACGAGGAACCTGCGAAGGGGCATATTCTTCTTAGCTGAGATTGGTGTTAGTGAAGAGGACATTAAGAAATTTGTGGTGTCTAACGGTTCAATACTTGGTTCCGTCCAATTGAAGAAACCAAACAGCATTATGACACATCTCAGTGTAGGGAAGAAGCGCCTTTGCAGGATGGTAATGGAGGATCCACAACTGTTGATGAAATTCTCATTAGGGGCAAAGGTCAGCCGCATACCGAAAGTTGATCTCCATGAAGCATCCTTCAAGGAGAAGGTGAAATTTTTACAGAACTTAGGATTTATGGAAGGATCCGAACGAATGACGAGGGGACTCAAAGCATTTCGTGGTAAAGGTGACGAGCTAAAAGATCGCTACGACTTCTTGGTCAAGACCGGTTTGGACCCGGAACATGTGGTGCAGATGATCACTATGGCTCCACATGTTCTGAATCAGAAGATCCATGTCCTTGAATCCAAGATATCCTTCCTTGTAAATGATATGGGATATCCTCTGAGTACCCTGGTAATTTTCCCTTCATTCCTCTCGTTTACCGTGGAGAGAACCAAGCTTAGGTTTTTGATGTACAATTGGTTGTTGGAGAAAGGAGTGATTGCTACTGGACTAGCTCTTAGCACTCTCCTAGCCACTGCAGACAAACATTTCGTAAAACGTTATGTAGTAAGGCACCCCATGGGTTTAGAAGTCTGGGAGAAATTCAAGACAGAGGTAGCTTCAACAAAAAACAACACACCCTGTACTCCAGATGATTAG
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| Protein seq | MLRSVPAARHRWLPWNGLARGSSRTPHCHAAAAAVSSWHVHDSSSPCASSWSWASQVGDRIQLRPFSAAPAIVGDGIEDVDDRRVKQMRRRRDARIAQKAFMEYLHVTRGICFSDAEHMSKRSPIFISKLLEKVKDAAKEPTEEGEEVPFRSKVKKREMRDERVSKALVRLFNFHPINEFEPFFESIGIAPGEYEPLLPRDLMFLNDDETMLDNFRVLCNYGIARTKIGRIYRDATEVFSFGHGVLASKLKALEDQGLSKTSVIKLVMSSPVILVRDPNVELKILRWLDDVGIQRDWLGRFLSVKKSYNWGKMVQVPQFFSDLGFTNEGIGKLVRQNPDFLFSGSGKMLFSAVLVMLKAGFGKKELVDLFLNFPNLSVDNFTRNLRRGIFFLAEIGVSEEDIKKFVVSNGSILGSVQLKKPNSIMTHLSVGKKRLCRMVMEDPQLLMKFSLGAKVSRIPKVDLHEASFKEKVKFLQNLGFMEGSERMTRGLKAFRGKGDELKDRYDFLVKTGLDPEHVVQMITMAPHVLNQKIHVLESKISFLVNDMGYPLSTLVIFPSFLSFTVERTKLRFLMYNWLLEKGVIATGLALSTLLATADKHFVKRYVVRHPMGLEVWEKFKTEVASTKNNTPCTPDD |
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| Function | Transcription termination factor MTEF18, mitochondrial [UniProtKB/Swiss-Prot:Q9M219] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0518200 | Os08t0518200-01 | Chr08 | 25719480 | 25721907 | - | irgsp1_rep | ||
| CDS seq | ATGCTCCGGTCAGTGCCAGCCGCTCGCCACAGGTGGCTTCCATGGAATGGCCTTGCCAGGGGCTCATCCAGAACCCCACATTGTCATGCTGCTGCTGCTGCTGTCAGTTCTTGGCATGTCCATGATTCATCATCACCATGTGCGTCGAGCTGGAGCTGGGCCAGTCAGGTTGGTGACAGGATTCAGCTGCGGCCATTCTCGGCCGCTCCGGCGATCGTCGGGGATGGGATTGAGGATGTGGATGATCGGAGGGTCAAGCAGATGCGGAGGAGGCGCGACGCCCGCATCGCGCAGAAGGCATTCATGGAGTACCTCCATGTCACGCGTGGGATTTGCTTCAGTGATGCCGAGCACATGAGCAAGCGCTCGCCGATCTTCATCAGCAAGCTGCTGGAGAAGGTGAAGGATGCGGCGAAGGAGCCCACGGAGGAGGGGGAGGAGGTGCCCTTCAGGTCGAAGGTGAAGAAGAGGGAGATGAGGGATGAGAGGGTCAGCAAGGCGTTGGTGCGGCTGTTCAACTTCCACCCTATCAACGAGTTCGAGCCGTTCTTCGAGAGTATCGGCATCGCGCCGGGCGAGTATGAGCCATTGTTGCCTCGTGATCTCATGTTTCTCAATGATGATGAGACGATGCTCGACAATTTCCGGGTGCTTTGCAACTATGGCATCGCGCGCACCAAGATAGGGAGGATATACAGGGATGCTACCGAAGTGTTTAGTTTTGGCCATGGAGTTCTTGCGTCGAAGCTGAAGGCCCTTGAGGATCAAGGGTTGAGTAAGACCAGTGTGATCAAGCTAGTGATGTCGAGCCCTGTCATACTGGTCCGTGATCCAAATGTGGAATTGAAGATTCTGCGCTGGCTAGATGATGTTGGAATTCAGAGAGACTGGCTTGGCCGATTCTTATCTGTAAAGAAGTCTTATAACTGGGGAAAGATGGTCCAAGTCCCTCAGTTCTTCAGTGATTTAGGATTCACTAATGAAGGTATTGGCAAATTGGTCAGACAGAATCCCGATTTCTTGTTTAGTGGTTCAGGAAAGATGCTGTTCTCGGCAGTCCTCGTCATGCTAAAAGCTGGGTTTGGAAAAAAGGAATTGGTTGATCTTTTTCTGAATTTCCCAAATTTGTCAGTCGACAATTTCACGAGGAACCTGCGAAGGGGCATATTCTTCTTAGCTGAGATTGGTGTTAGTGAAGAGGACATTAAGAAATTTGTGGTGTCTAACGGTTCAATACTTGGTTCCGTCCAATTGAAGAAACCAAACAGCATTATGACACATCTCAGTGTAGGGAAGAAGCGCCTTTGCAGGATGGTAATGGAGGATCCACAACTGTTGATGAAATTCTCATTAGGGGCAAAGGTCAGCCGCATACCGAAAGTTGATCTCCATGAAGCATCCTTCAAGGAGAAGGTGAAATTTTTACAGAACTTAGGATTTATGGAAGGATCCGAACGAATGACGAGGGGACTCAAAGCATTTCGTGGTAAAGGTGACGAGCTAAAAGATCGCTACGACTTCTTGGTCAAGACCGGTTTGGACCCGGAACATGTGGTGCAGATGATCACTATGGCTCCACATGTTCTGAATCAGAAGATCCATGTCCTTGAATCCAAGATATCCTTCCTTGTAAATGATATGGGATATCCTCTGAGTACCCTGGTAATTTTCCCTTCATTCCTCTCGTTTACCGTGGAGAGAACCAAGCTTAGGTTTTTGATGTACAATTGGTTGTTGGAGAAAGGAGTGATTGCTACTGGACTAGCTCTTAGCACTCTCCTAGCCACTGCAGACAAACATTTCGTAAAACGTTATGTAGTAAGGCACCCCATGGGTTTAGAAGTCTGGGAGAAATTCAAGACAGAGGTAGCTTCAACAAAAAACAACACACCCTGTACTCCAGATGATTAG
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| Protein seq | MLRSVPAARHRWLPWNGLARGSSRTPHCHAAAAAVSSWHVHDSSSPCASSWSWASQVGDRIQLRPFSAAPAIVGDGIEDVDDRRVKQMRRRRDARIAQKAFMEYLHVTRGICFSDAEHMSKRSPIFISKLLEKVKDAAKEPTEEGEEVPFRSKVKKREMRDERVSKALVRLFNFHPINEFEPFFESIGIAPGEYEPLLPRDLMFLNDDETMLDNFRVLCNYGIARTKIGRIYRDATEVFSFGHGVLASKLKALEDQGLSKTSVIKLVMSSPVILVRDPNVELKILRWLDDVGIQRDWLGRFLSVKKSYNWGKMVQVPQFFSDLGFTNEGIGKLVRQNPDFLFSGSGKMLFSAVLVMLKAGFGKKELVDLFLNFPNLSVDNFTRNLRRGIFFLAEIGVSEEDIKKFVVSNGSILGSVQLKKPNSIMTHLSVGKKRLCRMVMEDPQLLMKFSLGAKVSRIPKVDLHEASFKEKVKFLQNLGFMEGSERMTRGLKAFRGKGDELKDRYDFLVKTGLDPEHVVQMITMAPHVLNQKIHVLESKISFLVNDMGYPLSTLVIFPSFLSFTVERTKLRFLMYNWLLEKGVIATGLALSTLLATADKHFVKRYVVRHPMGLEVWEKFKTEVASTKNNTPCTPDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0518200 | RBH | 0.985224 | 0.824961 | 0.491529 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40630 | RBH | 0.597292 | 0.494744 | 0.112821 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022290 | RBH | 0.153640 | 1.057604 | 0.636885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022180 | SBH | 0.0 | 0.714792 | 0.212058 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022070 | RBH | 0.610888 | 0.646780 | 0.946151 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022190 | RBH | 0.102046 | 0.196007 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022060 | SBH | 1.565557 | 3.180198 | 3.188009 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0409900 | RBH | 2.1500925 | 3.516391 | 3.077402 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021940 | RBH | 0.075325 | 0.249743 | 0.287685 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0430900 | RBH | 2.4350985 | 2.628669 | 10.785153 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021300 | RBH | 0.080144 | 0.098504 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021610 | RBH | 0.111084 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022270 | SBH | 0.061258 | 0.119006 | 0.222317 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021610 | RBH | 0.046021 | 0.542302 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021780 | RBH | 0.061315 | 1.390211 | 1.107429 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021950 | RBH | 0.000000 | 0.000000 | 1.227869 |
