Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0494350 | OGI:08070340 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:24402687-24403874 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGACGCGCGGAGGGTGTTCGATGAAATGCCGGAACGGGACGCCGTGTCGTGGAACACGGTTATTGGAGGGTATGTCAGGGCGGGGGAGGTAACCAAAGCGGTGGATATGTTCAGTGAGATGATGTGCTGCAGTGTGGGCGTCAGTGTGACGGCGTTGGTCACCATGATCCGGTGTGGGTGGCAAGCTGAGCCTGTGCATGGATTCTGCATCAAGGTGGGGTTCTGCAGGGATGCAAAGGTGGCATCTGCAATGGTTGGGATGTATGTGAGAGAGAAGAGCGTCGAGTGTGGCAGGAAGGTGTTCGATGAGGCGACCAAGAGGGACCTGGTGCTGTACAATTGTATGGTGGATGGCTATGCTGAGGCAGGGCAAGTTGAGGAGGCAATGGGCTTGGTGGATAGGATGAGGCTGGAGGGAGTGAGGCCAAGCTCAGGGACTCTTGTGGGTGTGCTGTCTGCTTGTGGAGCATCTGGGGCAATGGCAGCCGGCCGTCGCCTTCACGAGATTGCGCTAGAAGCAGGACTTGAGCTTGACACTGCACTTGGCACAGCTCTCATGGATATGTATTTCAAGTGCGGGTACCCCAGTGAGGCGGTGGCGGTTTTCGACGCGATGCAAGAAAGGGATGTGAAGGCATGGACAGTGATGATCATGGGTTTCGGTGTTAATGGACAGGCAGGTGAAGTGATCTCCCTGTTTCGCTCCATGGAAGAAGATGGAGTGGTGCCTAACGAGGTCACCTTTCTTGCGGTACTGAATGCCTGTAGCCATGGTGGGTTGGTGTCGGAAGGGAAGAAGTTCATGGAGAGCATGGTGTTGCAATATGGCATCTTCCCTAACACTGAACACTATGGCTGCATCATCGATCTCCTGGGAAGGGCGGGGCGGTTGGATGAAGCTTATGAGCTCATAGCGAGCCTATCTTCCCAGAGTGATGCCACAGCATGGAGAGCCTTGCTTGCGGCCTGCAGAGTCCATGGCAATGCCAACCTGGGGAGGATGGTGCAGGCACGGTTGGATAACATGGACGACTACCATCCATCAGATGCCATTCTTTTGTCAAATACATATGCATTGGAAAGCCGATGGGATGAGATTGCACATGTCAGAGATTCAGAAGATCAGAAAATTGTCAAGGACAAGAAGGAACCAGGTTGCAGCTCCATAGAAGTGTCTTGGTGA
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| CDS seq | ATGGCGGACGCGCGGAGGGTGTTCGATGAAATGCCGGAACGGGACGCCGTGTCGTGGAACACGGTTATTGGAGGGTATGTCAGGGCGGGGGAGGTAACCAAAGCGGTGGATATGTTCAGTGAGATGATGTGCTGCAGTGTGGGCGTCAGTGTGACGGCGTTGGTCACCATGATCCGGTGTGGGTGGCAAGCTGAGCCTGTGCATGGATTCTGCATCAAGGTGGGGTTCTGCAGGGATGCAAAGGTGGCATCTGCAATGGTTGGGATGTATGTGAGAGAGAAGAGCGTCGAGTGTGGCAGGAAGGTGTTCGATGAGGCGACCAAGAGGGACCTGGTGCTGTACAATTGTATGGTGGATGGCTATGCTGAGGCAGGGCAAGTTGAGGAGGCAATGGGCTTGGTGGATAGGATGAGGCTGGAGGGAGTGAGGCCAAGCTCAGGGACTCTTGTGGGTGTGCTGTCTGCTTGTGGAGCATCTGGGGCAATGGCAGCCGGCCGTCGCCTTCACGAGATTGCGCTAGAAGCAGGACTTGAGCTTGACACTGCACTTGGCACAGCTCTCATGGATATGTATTTCAAGTGCGGGTACCCCAGTGAGGCGGTGGCGGTTTTCGACGCGATGCAAGAAAGGGATGTGAAGGCATGGACAGTGATGATCATGGGTTTCGGTGTTAATGGACAGGCAGGTGAAGTGATCTCCCTGTTTCGCTCCATGGAAGAAGATGGAGTGGTGCCTAACGAGGTCACCTTTCTTGCGGTACTGAATGCCTGTAGCCATGGTGGGTTGGTGTCGGAAGGGAAGAAGTTCATGGAGAGCATGGTGTTGCAATATGGCATCTTCCCTAACACTGAACACTATGGCTGCATCATCGATCTCCTGGGAAGGGCGGGGCGGTTGGATGAAGCTTATGAGCTCATAGCGAGCCTATCTTCCCAGAGTGATGCCACAGCATGGAGAGCCTTGCTTGCGGCCTGCAGAGTCCATGGCAATGCCAACCTGGGGAGGATGGTGCAGGCACGGTTGGATAACATGGACGACTACCATCCATCAGATGCCATTCTTTTGTCAAATACATATGCATTGGAAAGCCGATGGGATGAGATTGCACATGTCAGAGATTCAGAAGATCAGAAAATTGTCAAGGACAAGAAGGAACCAGGTTGCAGCTCCATAGAAGTGTCTTGGTGA
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| Protein seq | MADARRVFDEMPERDAVSWNTVIGGYVRAGEVTKAVDMFSEMMCCSVGVSVTALVTMIRCGWQAEPVHGFCIKVGFCRDAKVASAMVGMYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEEAMGLVDRMRLEGVRPSSGTLVGVLSACGASGAMAAGRRLHEIALEAGLELDTALGTALMDMYFKCGYPSEAVAVFDAMQERDVKAWTVMIMGFGVNGQAGEVISLFRSMEEDGVVPNEVTFLAVLNACSHGGLVSEGKKFMESMVLQYGIFPNTEHYGCIIDLLGRAGRLDEAYELIASLSSQSDATAWRALLAACRVHGNANLGRMVQARLDNMDDYHPSDAILLSNTYALESRWDEIAHVRDSEDQKIVKDKKEPGCSSIEVSW |
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| Function | Pentatricopeptide repeat-containing protein At1g26900, mitochondrial [UniProtKB/Swiss-Prot:Q9ZVG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0494350 | Os08t0494350-00 | Chr08 | 24402687 | 24403874 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGACGCGCGGAGGGTGTTCGATGAAATGCCGGAACGGGACGCCGTGTCGTGGAACACGGTTATTGGAGGGTATGTCAGGGCGGGGGAGGTAACCAAAGCGGTGGATATGTTCAGTGAGATGATGTGCTGCAGTGTGGGCGTCAGTGTGACGGCGTTGGTCACCATGATCCGGTGTGGGTGGCAAGCTGAGCCTGTGCATGGATTCTGCATCAAGGTGGGGTTCTGCAGGGATGCAAAGGTGGCATCTGCAATGGTTGGGATGTATGTGAGAGAGAAGAGCGTCGAGTGTGGCAGGAAGGTGTTCGATGAGGCGACCAAGAGGGACCTGGTGCTGTACAATTGTATGGTGGATGGCTATGCTGAGGCAGGGCAAGTTGAGGAGGCAATGGGCTTGGTGGATAGGATGAGGCTGGAGGGAGTGAGGCCAAGCTCAGGGACTCTTGTGGGTGTGCTGTCTGCTTGTGGAGCATCTGGGGCAATGGCAGCCGGCCGTCGCCTTCACGAGATTGCGCTAGAAGCAGGACTTGAGCTTGACACTGCACTTGGCACAGCTCTCATGGATATGTATTTCAAGTGCGGGTACCCCAGTGAGGCGGTGGCGGTTTTCGACGCGATGCAAGAAAGGGATGTGAAGGCATGGACAGTGATGATCATGGGTTTCGGTGTTAATGGACAGGCAGGTGAAGTGATCTCCCTGTTTCGCTCCATGGAAGAAGATGGAGTGGTGCCTAACGAGGTCACCTTTCTTGCGGTACTGAATGCCTGTAGCCATGGTGGGTTGGTGTCGGAAGGGAAGAAGTTCATGGAGAGCATGGTGTTGCAATATGGCATCTTCCCTAACACTGAACACTATGGCTGCATCATCGATCTCCTGGGAAGGGCGGGGCGGTTGGATGAAGCTTATGAGCTCATAGCGAGCCTATCTTCCCAGAGTGATGCCACAGCATGGAGAGCCTTGCTTGCGGCCTGCAGAGTCCATGGCAATGCCAACCTGGGGAGGATGGTGCAGGCACGGTTGGATAACATGGACGACTACCATCCATCAGATGCCATTCTTTTGTCAAATACATATGCATTGGAAAGCCGATGGGATGAGATTGCACATGTCAGAGATTCAGAAGATCAGAAAATTGTCAAGGACAAGAAGGAACCAGGTTGCAGCTCCATAGAAGTGTCTTGGTGA
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| Protein seq | MADARRVFDEMPERDAVSWNTVIGGYVRAGEVTKAVDMFSEMMCCSVGVSVTALVTMIRCGWQAEPVHGFCIKVGFCRDAKVASAMVGMYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEEAMGLVDRMRLEGVRPSSGTLVGVLSACGASGAMAAGRRLHEIALEAGLELDTALGTALMDMYFKCGYPSEAVAVFDAMQERDVKAWTVMIMGFGVNGQAGEVISLFRSMEEDGVVPNEVTFLAVLNACSHGGLVSEGKKFMESMVLQYGIFPNTEHYGCIIDLLGRAGRLDEAYELIASLSSQSDATAWRALLAACRVHGNANLGRMVQARLDNMDDYHPSDAILLSNTYALESRWDEIAHVRDSEDQKIVKDKKEPGCSSIEVSW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0494350 | RBH | 0.841767 | 0.316131 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38610 | RBH | 0.367613 | 0.135151 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0474051 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020610 | RBH | 0.131572 | 0.0 | 0.879927 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020530 | RBH | 0.0 | 0.0 | 0.665922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020400 | RBH | 0.450664 | 0.0 | 1.577853 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020500 | RBH | 1.479907 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0389100 | RBH | 0.7057525 | 2.178815 | 1.124181 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020370 | RBH | 0.101823 | 0.0 | 0.293310 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0409700 | RBH | 0.7726665 | 2.8311855 | 4.411566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019710 | RBH | 0.088651 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019990 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020680 | RBH | 0.0 | 0.0 | 0.173606 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020030 | RBH | 0.0 | 1.034601 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020190 | RBH | 0.083887 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020340 | RBH | 0.254279 | 0.000000 | 0.419966 |
