Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0490800 | OGI:08069920 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:24258186-24258495 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGACGGCATGTTTGAGAAGCTTGTCGGTGAGGCCGCCAAGCTCGCCCGGTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCTGTCCGCCTCGTCCTCCTCGGCGAGCTCGCCAAGCATGCCGTCTCCGAGGGTGCTAAGGCCGTCACCAAGTTCACTAGCTCTTAGGCGCTCTAGGGTCTAATAGTTCTTGGCGATTCTCTTTCGTTGTAGCGAGTTTCTGGCAGCGATGGTAGTTGCCCTGCCTATCTCTGATTTCTATCTCGGGTGTATAGTGTTTGTGTCTAGTGCTGGCTGA |
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| CDS seq | ATGTTTGAGAAGCTTGTCGGTGAGGCCGCCAAGCTCGCCCGGTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCTGTCCGCCTCGTCCTCCTCGGCGAGCTCGCCAAGCATGCCGTCTCCGAGGGTGCTAAGGCCGTCACCAAGTTCACTAGCTCTTAG |
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| Protein seq | MFEKLVGEAAKLARYNKKPTITSREIQTSVRLVLLGELAKHAVSEGAKAVTKFTSS |
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| Function | Histone H2B.2 [UniProtKB/Swiss-Prot:Q6ZBP3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0490800 | Os08t0490800-00 | Chr08 | 24258186 | 24258495 | + | irgsp1_rep | ||
| CDS seq | ATGTTTGAGAAGCTTGTCGGTGAGGCCGCCAAGCTCGCCCGGTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCTGTCCGCCTCGTCCTCCTCGGCGAGCTCGCCAAGCATGCCGTCTCCGAGGGTGCTAAGGCCGTCACCAAGTTCACTAGCTCTTAG |
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| Protein seq | MFEKLVGEAAKLARYNKKPTITSREIQTSVRLVLLGELAKHAVSEGAKAVTKFTSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0490800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38300 | SBH | 1.233628 | 0.487170 | 1.479297 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0490900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020240 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0386700 | SBH | 90.3400115 | 17.352167 | 46.4866695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0407000 | SBH | 76.199167 | 1.916314 | 373.9322965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019570 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020420 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019920 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020080 | RBH | 0.0 | 0.0 | 0.0 |
