Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0413200 | OGI:08058250 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:19766166-19767472 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTCCCACTTGGTTGTAATCTTGTCAGTGTGCCTGAATTCGTACGTCAACGCAACGCTGCCATCCATCCTCGTGAGCACGAACCTCTCAACCAGTAGGTAACACCCAAACTTGTCCCAGTGGCCGCCCAGCCCGTCATGCCTCTCCACCCTCTTGATCCTCTCCACGTCGTCGCCATTGCCGGCAACCCACCCTCCCTTCTCCAGCTCCCACTCCATCTTCTCCCACACCACCATGTCCAGCCCCAGCCCTCCTCCTCCTCCTGCCGCCGCAGCCGGGCTCGCCGCCGGCAGGAACCACATCACCCCGTCGAACACCTGCGGTGCGCCTCCTTGCACCGCGCCGGCGCCGCCCAGCAGCGCCGTCGACCGGCGCACCGTCACGCTAACCTCGACCTCGTCCAGCCTGCTGCTGATGCTGCCCCGGTGGGTGTTGTCGCAGCTGTAGATCTCCTCCCAGCTCTGCTCCAGCGTCATCTTGTAGAACATGCACCGCTTGACCTGGTCCTTGAGCCACTGCTCGCCGCCGTCCTTGATGAACATGAACGGGCAGTACCACCTGCCGACGACGACGGGCGTCGAGCCTCCTACGCCGACGTCGAAGCTTTCGAGGTCAGGCATCCGGCGGCGGAGCGGCCAGTCCGTCCCGTGCGCCGTGTCAGTGAGGTTGCAGCTCGTGGACGCCGAGGTGTGGACCTTCCACCCCTTCCTCCTCAGGTAGCCCGGCGGGACGCCGTCCGGCGCGACGGCCACCGCCCTGAATCCGCCCCGGCGCGACAGCTGCACCACCTCCACCTGCTGGTAGACGTCGCCGCGGACGAACGGCCTCGGCGACGCGTCGTTCGCGAAGGACCAGAGGCCGCAGCACGTCACCACGTCCTCCTCCCTCGAGCACGCCGACACCTTCCCGGCGTGCCTCCCCGTGGCCCGGACGGCGTAGTAGCGGCCGGACGACAGCGGCTGGCCGACGACGGGCACGAACACGACGTCGTCGCGATCCGTGTGGGTGTGGGTCCTATGGGTCGTGCCGGCGCGGCCGCCGCCGTCCATCCTCGCGGTGGCGTACTCCACCTTGAGCTTCCGGCTCTGCGGGAAGGGGAGGCCGTACACCTGCCTGTCCAGCCACAACCCCCACCACCGCGTCGCCCGCTCGACGGCCGCCTCGTCCTCCACCACGAGGATCCCGGAGCCCGGGCCGTCCGGCGGCGGCTCCGCCGCGGCTTGCGGGTTGTCCTGGTACCGCGACATCGGCCTCGTCACGTACATATCGCTTGTCTCGGGCGTATATTCTTTGTGTGTTGCACAAG
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| CDS seq | ATGTACGTGACGAGGCCGATGTCGCGGTACCAGGACAACCCGCAAGCCGCGGCGGAGCCGCCGCCGGACGGCCCGGGCTCCGGGATCCTCGTGGTGGAGGACGAGGCGGCCGTCGAGCGGGCGACGCGGTGGTGGGGGTTGTGGCTGGACAGGCAGGTGTACGGCCTCCCCTTCCCGCAGAGCCGGAAGCTCAAGGTGGAGTACGCCACCGCGAGGATGGACGGCGGCGGCCGCGCCGGCACGACCCATAGGACCCACACCCACACGGATCGCGACGACGTCGTGTTCGTGCCCGTCGTCGGCCAGCCGCTGTCGTCCGGCCGCTACTACGCCGTCCGGGCCACGGGGAGGCACGCCGGGAAGGTGTCGGCGTGCTCGAGGGAGGAGGACGTGGTGACGTGCTGCGGCCTCTGGTCCTTCGCGAACGACGCGTCGCCGAGGCCGTTCGTCCGCGGCGACGTCTACCAGCAGGTGGAGGTGGTGCAGCTGTCGCGCCGGGGCGGATTCAGGGCGGTGGCCGTCGCGCCGGACGGCGTCCCGCCGGGCTACCTGAGGAGGAAGGGGTGGAAGGTCCACACCTCGGCGTCCACGAGCTGCAACCTCACTGACACGGCGCACGGGACGGACTGGCCGCTCCGCCGCCGGATGCCTGACCTCGAAAGCTTCGACGTCGGCGTAGGAGGCTCGACGCCCGTCGTCGTCGGCAGGTGGTACTGCCCGTTCATGTTCATCAAGGACGGCGGCGAGCAGTGGCTCAAGGACCAGGTCAAGCGGTGCATGTTCTACAAGATGACGCTGGAGCAGAGCTGGGAGGAGATCTACAGCTGCGACAACACCCACCGGGGCAGCATCAGCAGCAGGCTGGACGAGGTCGAGGTTAGCGTGACGGTGCGCCGGTCGACGGCGCTGCTGGGCGGCGCCGGCGCGGTGCAAGGAGGCGCACCGCAGGTGTTCGACGGGGTGATGTGGTTCCTGCCGGCGGCGAGCCCGGCTGCGGCGGCAGGAGGAGGAGGAGGGCTGGGGCTGGACATGGTGGTGTGGGAGAAGATGGAGTGGGAGCTGGAGAAGGGAGGGTGGGTTGCCGGCAATGGCGACGACGTGGAGAGGATCAAGAGGGTGGAGAGGCATGACGGGCTGGGCGGCCACTGGGACAAGTTTGGGTGTTACCTACTGGTTGAGAGGTTCGTGCTCACGAGGATGGATGGCAGCGTTGCGTTGACGTACGAATTCAGGCACACTGACAAGATTACAACCAAGTGGGAGTGA
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| Protein seq | MYVTRPMSRYQDNPQAAAEPPPDGPGSGILVVEDEAAVERATRWWGLWLDRQVYGLPFPQSRKLKVEYATARMDGGGRAGTTHRTHTHTDRDDVVFVPVVGQPLSSGRYYAVRATGRHAGKVSACSREEDVVTCCGLWSFANDASPRPFVRGDVYQQVEVVQLSRRGGFRAVAVAPDGVPPGYLRRKGWKVHTSASTSCNLTDTAHGTDWPLRRRMPDLESFDVGVGGSTPVVVGRWYCPFMFIKDGGEQWLKDQVKRCMFYKMTLEQSWEEIYSCDNTHRGSISSRLDEVEVSVTVRRSTALLGGAGAVQGGAPQVFDGVMWFLPAASPAAAAGGGGGLGLDMVVWEKMEWELEKGGWVAGNGDDVERIKRVERHDGLGGHWDKFGCYLLVERFVLTRMDGSVALTYEFRHTDKITTKWE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0413200 | Os08t0413200-00 | Chr08 | 19766166 | 19767472 | - | irgsp1_rep | ||
| CDS seq | ATGTACGTGACGAGGCCGATGTCGCGGTACCAGGACAACCCGCAAGCCGCGGCGGAGCCGCCGCCGGACGGCCCGGGCTCCGGGATCCTCGTGGTGGAGGACGAGGCGGCCGTCGAGCGGGCGACGCGGTGGTGGGGGTTGTGGCTGGACAGGCAGGTGTACGGCCTCCCCTTCCCGCAGAGCCGGAAGCTCAAGGTGGAGTACGCCACCGCGAGGATGGACGGCGGCGGCCGCGCCGGCACGACCCATAGGACCCACACCCACACGGATCGCGACGACGTCGTGTTCGTGCCCGTCGTCGGCCAGCCGCTGTCGTCCGGCCGCTACTACGCCGTCCGGGCCACGGGGAGGCACGCCGGGAAGGTGTCGGCGTGCTCGAGGGAGGAGGACGTGGTGACGTGCTGCGGCCTCTGGTCCTTCGCGAACGACGCGTCGCCGAGGCCGTTCGTCCGCGGCGACGTCTACCAGCAGGTGGAGGTGGTGCAGCTGTCGCGCCGGGGCGGATTCAGGGCGGTGGCCGTCGCGCCGGACGGCGTCCCGCCGGGCTACCTGAGGAGGAAGGGGTGGAAGGTCCACACCTCGGCGTCCACGAGCTGCAACCTCACTGACACGGCGCACGGGACGGACTGGCCGCTCCGCCGCCGGATGCCTGACCTCGAAAGCTTCGACGTCGGCGTAGGAGGCTCGACGCCCGTCGTCGTCGGCAGGTGGTACTGCCCGTTCATGTTCATCAAGGACGGCGGCGAGCAGTGGCTCAAGGACCAGGTCAAGCGGTGCATGTTCTACAAGATGACGCTGGAGCAGAGCTGGGAGGAGATCTACAGCTGCGACAACACCCACCGGGGCAGCATCAGCAGCAGGCTGGACGAGGTCGAGGTTAGCGTGACGGTGCGCCGGTCGACGGCGCTGCTGGGCGGCGCCGGCGCGGTGCAAGGAGGCGCACCGCAGGTGTTCGACGGGGTGATGTGGTTCCTGCCGGCGGCGAGCCCGGCTGCGGCGGCAGGAGGAGGAGGAGGGCTGGGGCTGGACATGGTGGTGTGGGAGAAGATGGAGTGGGAGCTGGAGAAGGGAGGGTGGGTTGCCGGCAATGGCGACGACGTGGAGAGGATCAAGAGGGTGGAGAGGCATGACGGGCTGGGCGGCCACTGGGACAAGTTTGGGTGTTACCTACTGGTTGAGAGGTTCGTGCTCACGAGGATGGATGGCAGCGTTGCGTTGACGTACGAATTCAGGCACACTGACAAGATTACAACCAAGTGGGAGTGA
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| Protein seq | MYVTRPMSRYQDNPQAAAEPPPDGPGSGILVVEDEAAVERATRWWGLWLDRQVYGLPFPQSRKLKVEYATARMDGGGRAGTTHRTHTHTDRDDVVFVPVVGQPLSSGRYYAVRATGRHAGKVSACSREEDVVTCCGLWSFANDASPRPFVRGDVYQQVEVVQLSRRGGFRAVAVAPDGVPPGYLRRKGWKVHTSASTSCNLTDTAHGTDWPLRRRMPDLESFDVGVGGSTPVVVGRWYCPFMFIKDGGEQWLKDQVKRCMFYKMTLEQSWEEIYSCDNTHRGSISSRLDEVEVSVTVRRSTALLGGAGAVQGGAPQVFDGVMWFLPAASPAAAAGGGGGLGLDMVVWEKMEWELEKGGWVAGNGDDVERIKRVERHDGLGGHWDKFGCYLLVERFVLTRMDGSVALTYEFRHTDKITTKWE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0413200 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31890 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0413100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015900 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015760 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015810 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0315700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015770 | RBH | 0.0 | 0.128216 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0336400 | RBH | 0.009408 | 0.200968 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015260 | RBH | 0.503236 | 0.032472 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015310 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016050 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015570 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015680 | RBH | 0.0 | 3.149456 | 0.0 |
