Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0404400 | OGI:08056680 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:19317164-19318218 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACTGGTCGCAGCCACAATTCAAGGGGCTGGATCTTGAGTTTGATGTCCCTCTTAGAGAGCTTGGATTCCATGGTGTTCCATATAAAGCTTCAGCTTTCATCATTCCAACTTCGACTTGTTTGGTTGAACTAATAGAGACACCCTCTCCCCCCCCCCCCTCTGCGAGGATCCTCCGTCGAGCATCTCTCGGCGCACGAGCTGAAGCTGGTGACCACCGGCGGCGCGCCGTTCTGCTGCGACGGCTGCATGCAGCCCGGCGACGACGGCGCCGGCTACCGGTGCGGCGGTGCGACGTCTGCCACTTCGACCTGCGCACGTGCTGCGCGCTCCCGCCGGCCACCCTGGAGAACGACATGTTCGAGGTCAGCGCGTTCGCGTTCCTCGCCGAGCCGCCGGCGGCGCCCGCCGCCGCGGGCGGCAGGATCTGCGACGCCTGCGGCGACGGCGTGCGCGGCTTCGTCTACCACTCCGACGACCCCCGACCTCGACCTCCACCCATGCTGCGCGTTCCTGCGCAGGCGCGTCGTGGTGCAGGACGGCCGCCACTTCGAGCTCCGCAAGCGCGCGCAGCCGCGCCGGCCTGTGCGGCGAGAGGAGCGGCCGCCGCCGCAACTTCTGGGCGTACCGGACCTACGACGACGACGGCGAACCCGTGTACCTGCACATCGCGTGCGTCAAGGACGGACACCGCGGGCGGTGCGCGGCGGCGGTGTGGCGGCGAGATCGTGCTGGTGAGCTCGTCGCCGGCGATGGACGGCGTGCTGCAGAGCGTGCCCCGGAGGAGGACGCCGCGGAGCGGCGGGTTCGAGAGGTTTTGCAAGATTGTTAACGTCGTCGTGAGCGTCATCATCGCGGTCATATTCGGGAGTCCCATGGCGATGATAAGCGCGGTTGCAGGGCCCGATGGTCTCCTCCGTGGGTAGGGAGATAGTGCGAAAATAATCAAAATGATATCCGTTGTGAATTAGTGCAAAACACATTCATATTCAACTCAAATTGGGACGATCCGACGATGAGAAATTTGAAAAATAAATAGCAATGGATATGTGACGCG
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| CDS seq | CACTGGTCGCAGCCACAATTCAAGGGGCTGGATCTTGAGTTTGATGTCCCTCTTAGAGAGCTTGGATTCCATGGTGTTCCATATAAAGCTTCAGCTTTCATCATTCCAACTTCGACTTGTTTGGTTGAACTAATAGAGACACCCTCTCCCCCCCCCCCCTCTGCGAGGATCCTCCGTCGAGCATCTCTCGGCGCACGAGCTGAAGCTGGTGACCACCGGCGGCGCGCCGTTCTGCTGCGACGGCTGCATGCAGCCCGGCGACGACGGCGCCGGCTACCGGTGCGGCGGTGCGACGTCTGCCACTTCGACCTGCGCACGTGCTGCGCGCTCCCGCCGGCCACCCTGGAGAACGACATGTTCGAGGTCAGCGCGTTCGCGTTCCTCGCCGAGCCGCCGGCGGCGCCCGCCGCCGCGGGCGGCAGGATCTGCGACGCCTGCGGCGACGGCGTGCGCGGCTTCGTCTACCACTCCGACGACCCCCGACCTCGACCTCCACCCATGCTGCGCGTTCCTGCGCAGGCGCGTCGTGGTGCAGGACGGCCGCCACTTCGAGCTCCGCAAGCGCGCGCAGCCGCGCCGGCCTGTGCGGCGAGAGGAGCGGCCGCCGCCGCAACTTCTGGGCGTACCGGACCTACGACGACGACGGCGAACCCGTGTACCTGCACATCGCGTGCGTCAAGGACGGACACCGCGGGCGGTGCGCGGCGGCGGTGTGGCGGCGAGATCGTGCTGGTGAGCTCGTCGCCGGCGATGGACGGCGTGCTGCAGAGCGTGCCCCGGAGGAGGACGCCGCGGAGCGGCGGGTTCGAGAGGTTTTGCAAGATTGTTAACGTCGTCGTGAGCGTCATCATCGCGGTCATATTCGGGAGTCCCATGGCGATGATAAGCGCGGTTGCAGGGCCCGATGGTCTCCTCCGTGGGTAG
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| Protein seq | HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPSPPPPSARILRRASLGARAEAGDHRRRAVLLRRLHAARRRRRRLPVRRCDVCHFDLRTCCALPPATLENDMFEVSAFAFLAEPPAAPAAAGGRICDACGDGVRGFVYHSDDPRPRPPPMLRVPAQARRGAGRPPLRAPQARAAAPACAARGAAAAATSGRTGPTTTTANPCTCTSRASRTDTAGGARRRCGGEIVLVSSSPAMDGVLQSVPRRRTPRSGGFERFCKIVNVVVSVIIAVIFGSPMAMISAVAGPDGLLRG |
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| Function | FACT complex subunit SPT16 [UniProtKB/Swiss-Prot:Q8H6B1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0404400 | Os08t0404400-01 | Chr08 | 19317164 | 19318218 | + | irgsp1_rep | ||
| CDS seq | CACTGGTCGCAGCCACAATTCAAGGGGCTGGATCTTGAGTTTGATGTCCCTCTTAGAGAGCTTGGATTCCATGGTGTTCCATATAAAGCTTCAGCTTTCATCATTCCAACTTCGACTTGTTTGGTTGAACTAATAGAGACACCCTCTCCCCCCCCCCCCTCTGCGAGGATCCTCCGTCGAGCATCTCTCGGCGCACGAGCTGAAGCTGGTGACCACCGGCGGCGCGCCGTTCTGCTGCGACGGCTGCATGCAGCCCGGCGACGACGGCGCCGGCTACCGGTGCGGCGGTGCGACGTCTGCCACTTCGACCTGCGCACGTGCTGCGCGCTCCCGCCGGCCACCCTGGAGAACGACATGTTCGAGGTCAGCGCGTTCGCGTTCCTCGCCGAGCCGCCGGCGGCGCCCGCCGCCGCGGGCGGCAGGATCTGCGACGCCTGCGGCGACGGCGTGCGCGGCTTCGTCTACCACTCCGACGACCCCCGACCTCGACCTCCACCCATGCTGCGCGTTCCTGCGCAGGCGCGTCGTGGTGCAGGACGGCCGCCACTTCGAGCTCCGCAAGCGCGCGCAGCCGCGCCGGCCTGTGCGGCGAGAGGAGCGGCCGCCGCCGCAACTTCTGGGCGTACCGGACCTACGACGACGACGGCGAACCCGTGTACCTGCACATCGCGTGCGTCAAGGACGGACACCGCGGGCGGTGCGCGGCGGCGGTGTGGCGGCGAGATCGTGCTGGTGAGCTCGTCGCCGGCGATGGACGGCGTGCTGCAGAGCGTGCCCCGGAGGAGGACGCCGCGGAGCGGCGGGTTCGAGAGGTTTTGCAAGATTGTTAACGTCGTCGTGAGCGTCATCATCGCGGTCATATTCGGGAGTCCCATGGCGATGATAAGCGCGGTTGCAGGGCCCGATGGTCTCCTCCGTGGGTAG
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| Protein seq | HWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPSPPPPSARILRRASLGARAEAGDHRRRAVLLRRLHAARRRRRRLPVRRCDVCHFDLRTCCALPPATLENDMFEVSAFAFLAEPPAAPAAAGGRICDACGDGVRGFVYHSDDPRPRPPPMLRVPAQARRGAGRPPLRAPQARAAAPACAARGAAAAATSGRTGPTTTTANPCTCTSRASRTDTAGGARRRCGGEIVLVSSSPAMDGVLQSVPRRRTPRSGGFERFCKIVNVVVSVIIAVIFGSPMAMISAVAGPDGLLRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0404400 | RBH | 0.194251 | 0.238895 | 0.593702 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31240 | RBH | 0.648753 | 0.605972 | 0.377915 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0404500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015440 | SBH | 0.0 | 2.459361 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015300 | SBH | 0.065073 | 0.000000 | 1.209302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015230 | SBH | 0.761456 | 0.000000 | 3.803999 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015520 | SBH | 0.142319 | 0.131536 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015320 | SBH | 5.997322 | 17.993088 | 17.963135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0305900 | RBH | 5.455635 | 12.3190045 | 19.03189 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015350 | SBH | 0.333101 | 0.175188 | 1.157386 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0328300 | SBH | 0.151841 | 5.5338125 | 0.0471165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014820 | SBH | 0.093232 | 0.159588 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014960 | SBH | 0.458085 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014870 | SBH | 6.147139 | 17.014177 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015570 | SBH | 0.715118 | 0.265843 | 0.530312 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014980 | SBH | 0.345251 | 1.816939 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015070 | SBH | 0.417907 | 3.797197 | 1.296494 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015220 | SBH | 1.803669 | 0.709664 | 4.252910 |
