Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0373400 | OGI:08051510 | 6/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:17470308-17471234 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTAAGCACAGCCATCACATCCTAGTGCACTGATGACTTTGTTGTCCTCATCCTGATTCTTGCCACCATTGTTGTCAGTGAGATGTGCACTATCCTCCTCATCAACATTGCCATCATTCATTACCTCCCCAAAGTATATATAACTACTAATAGTAATATTGGTCTTGAGATTACTCGGGTGCTTAGCAATTTCGTGATTGATGTTGCGATGCGCAGCTTCAATGTTTGATTGTATGGCACCAGCTGTATACATCTCAACATGGACATTTTTAAGACTCTTGAGGTGCTGAATGCCAGAATGCGTGCTTCCATATAATTCTGCCCCGCAAGCACTGTACATCAACTTGAGGGTTTCAAGCTTTGGCATGGACTTCTCTTGGAAACTTAAGCATGGCAACCCGGACCACAGGAGGAATAAGACAAGACTACGGAAACCTGTTTCCTTAATGACAATTTTCTCTTTACGAAGAGGTACCACCCAAAGATGGAACTGAAGCAGCACCGGCAGATGAGCAAGCAAATCCAAATCTTCATCCTCCAGCTCCCACACATCAAGTTTCAACTCAGTGAGCCTATCGAGCGGTGCAATCCACTTGGGGCACCGCTGAAAGTAGGAGTTCCACATCCAGAACCTTTGAAGGAGGCATGGCGGGGGTGACAAAGATGCTAGAAAATCAACAGGAATAGGTCTGGCACTCAGAATACTTAGTGATTTGAGGCTACAGCTGCTCAATTTGCTGAGAGAAGAGGACAAGTACTCCTTGTATCTTGCATCACTTGGCTCGTCCTCATCCCAAGATATCGAGAGCTCTCTCAAGTTCCTCAAATTTCCAAGTTCCTGCACTGCATTTACTGGGCTGTCACAGATGTTGAATTGTGACAGTGTCCGAAGTGCTTGCATGCTCCCAATGTCTTTCGGTAACAT
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| CDS seq | ATGTTACCGAAAGACATTGGGAGCATGCAAGCACTTCGGACACTGTCACAATTCAACATCTGTGACAGCCCAGTAAATGCAGTGCAGGAACTTGGAAATTTGAGGAACTTGAGAGAGCTCTCGATATCTTGGGATGAGGACGAGCCAAGTGATGCAAGATACAAGGAGTACTTGTCCTCTTCTCTCAGCAAATTGAGCAGCTGTAGCCTCAAATCACTAAGTATTCTGAGTGCCAGACCTATTCCTGTTGATTTTCTAGCATCTTTGTCACCCCCGCCATGCCTCCTTCAAAGGTTCTGGATGTGGAACTCCTACTTTCAGCGGTGCCCCAAGTGGATTGCACCGCTCGATAGGCTCACTGAGTTGAAACTTGATGTGTGGGAGCTGGAGGATGAAGATTTGGATTTGCTTGCTCATCTGCCGGTGCTGCTTCAGTTCCATCTTTGGGTGGTACCTCTTCGTAAAGAGAAAATTGTCATTAAGGAAACAGGTTTCCGTAGTCTTGTCTTATTCCTCCTGTGGTCCGGGTTGCCATGCTTAAGTTTCCAAGAGAAGTCCATGCCAAAGCTTGAAACCCTCAAGTTGATGTACAGTGCTTGCGGGGCAGAATTATATGGAAGCACGCATTCTGGCATTCAGCACCTCAAGAGTCTTAAAAATGTCCATGTTGAGATGTATACAGCTGGTGCCATACAATCAAACATTGAAGCTGCGCATCGCAACATCAATCACGAAATTGCTAAGCACCCGAGTAATCTCAAGACCAATATTACTATTAGTAGTTATATATACTTTGGGGAGGTAATGAATGATGGCAATGTTGATGAGGAGGATAGTGCACATCTCACTGACAACAATGGTGGCAAGAATCAGGATGAGGACAACAAAGTCATCAGTGCACTAGGATGTGATGGCTGTGCTTACTGA
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| Protein seq | MLPKDIGSMQALRTLSQFNICDSPVNAVQELGNLRNLRELSISWDEDEPSDARYKEYLSSSLSKLSSCSLKSLSILSARPIPVDFLASLSPPPCLLQRFWMWNSYFQRCPKWIAPLDRLTELKLDVWELEDEDLDLLAHLPVLLQFHLWVVPLRKEKIVIKETGFRSLVLFLLWSGLPCLSFQEKSMPKLETLKLMYSACGAELYGSTHSGIQHLKSLKNVHVEMYTAGAIQSNIEAAHRNINHEIAKHPSNLKTNITISSYIYFGEVMNDGNVDEEDSAHLTDNNGGKNQDEDNKVISALGCDGCAY |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0373400 | Os08t0373400-00 | Chr08 | 17470308 | 17471234 | - | irgsp1_rep | ||
| CDS seq | ATGTTACCGAAAGACATTGGGAGCATGCAAGCACTTCGGACACTGTCACAATTCAACATCTGTGACAGCCCAGTAAATGCAGTGCAGGAACTTGGAAATTTGAGGAACTTGAGAGAGCTCTCGATATCTTGGGATGAGGACGAGCCAAGTGATGCAAGATACAAGGAGTACTTGTCCTCTTCTCTCAGCAAATTGAGCAGCTGTAGCCTCAAATCACTAAGTATTCTGAGTGCCAGACCTATTCCTGTTGATTTTCTAGCATCTTTGTCACCCCCGCCATGCCTCCTTCAAAGGTTCTGGATGTGGAACTCCTACTTTCAGCGGTGCCCCAAGTGGATTGCACCGCTCGATAGGCTCACTGAGTTGAAACTTGATGTGTGGGAGCTGGAGGATGAAGATTTGGATTTGCTTGCTCATCTGCCGGTGCTGCTTCAGTTCCATCTTTGGGTGGTACCTCTTCGTAAAGAGAAAATTGTCATTAAGGAAACAGGTTTCCGTAGTCTTGTCTTATTCCTCCTGTGGTCCGGGTTGCCATGCTTAAGTTTCCAAGAGAAGTCCATGCCAAAGCTTGAAACCCTCAAGTTGATGTACAGTGCTTGCGGGGCAGAATTATATGGAAGCACGCATTCTGGCATTCAGCACCTCAAGAGTCTTAAAAATGTCCATGTTGAGATGTATACAGCTGGTGCCATACAATCAAACATTGAAGCTGCGCATCGCAACATCAATCACGAAATTGCTAAGCACCCGAGTAATCTCAAGACCAATATTACTATTAGTAGTTATATATACTTTGGGGAGGTAATGAATGATGGCAATGTTGATGAGGAGGATAGTGCACATCTCACTGACAACAATGGTGGCAAGAATCAGGATGAGGACAACAAAGTCATCAGTGCACTAGGATGTGATGGCTGTGCTTACTGA
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| Protein seq | MLPKDIGSMQALRTLSQFNICDSPVNAVQELGNLRNLRELSISWDEDEPSDARYKEYLSSSLSKLSSCSLKSLSILSARPIPVDFLASLSPPPCLLQRFWMWNSYFQRCPKWIAPLDRLTELKLDVWELEDEDLDLLAHLPVLLQFHLWVVPLRKEKIVIKETGFRSLVLFLLWSGLPCLSFQEKSMPKLETLKLMYSACGAELYGSTHSGIQHLKSLKNVHVEMYTAGAIQSNIEAAHRNINHEIAKHPSNLKTNITISSYIYFGEVMNDGNVDEEDSAHLTDNNGGKNQDEDNKVISALGCDGCAY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0373400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0373000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015640 | SBH | 0.0 | 0.535282 | 0.160938 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013920 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014190 | RBH | 0.0 | 0.265880 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015690 | SBH | 0.352825 | 1.159977 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015650 | SBH | 0.0 | 0.053881 | 0.216831 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0297500 | SBH | 0.356367 | 0 | 0.0082495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015160 | SBH | 0.0 | 0.040953 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013570 | RBH | 0.0 | 3.124133 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015940 | SBH | 0.0 | 0.000000 | 0.144417 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015330 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013620 | RBH | 0.0 | 7.756638 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015570 | SBH | 0.0 | 0.0 | 0.547361 |
