Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0324600 | OGI:06051710 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:14238376-14239200 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGTGCTGTCAGAAGGTCCGGGAGAACCCGAAGAGCTAGAAGTCATCTCCGCATCATCATCAAGAGGCGGAGGTGCCTGCATCACCAAACGGTAACAGCTCCCGCGGTAATATCGGATGTGGTTTGGCCCCTCAACAAGGAGGCCAGAAGGGGGTGGAATATCAGCAACAACCCGGTGACTACCACCATGCCCTTTGACAGTAGGAGATGGTGTAATCAGCTTGTAGTAACCTGATGGAGGGGGCAGCTCCTCCTCCGCTGGTAGCATGGCGTCTTCGCCGTACACGACCTCGGGTGGGATGGCCCAAATCCCAGCTCGGGGTTCCACCTCACGGTCGAGAATAGCGATGCGCCGCCTCGCTCGATGGAGCTCATGCATCAGATCCTCGATGATCCTCTCCTGGGACCTAACGAAGTAGCCCAAACGGAGGTGAGGGGAGGGCGGTTCCCCTTGAGCAGATTCCAGACCAGGGTAGGTGGCAAAGCGACTAGCACCCGGCCTAGAGGGAACAAAGCGGTAATCCACAGCGCACTTCGGGCTCGTGTCACGGAGAAAGCCGGTAGCGCTGTAGGCAGCATCATTCATAGCTCCCACGGCAGTCCACCCAGTGCCGTACACAATATCGTGGTGTCTGTCGTTGCCCCTCGATGGAAGGACCAGCTCAACCTGATAGCTCCTTTGAGAGGCGCTATAGTTTCGCGTGAAGACAGTGTACTGGGGTTGCCGAGTATAGCCGGCGTGCTGCATCATTTCCCAGAGTGTTTGCTGCATGGTGCCAGCCACGAAGCCTCCGGAATAGTAAGAGGGTTCCAAGGGAGCCAT
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| CDS seq | ATGGCTCCCTTGGAACCCTCTTACTATTCCGGAGGCTTCGTGGCTGGCACCATGCAGCAAACACTCTGGGAAATGATGCAGCACGCCGGCTATACTCGGCAACCCCAGTACACTGTCTTCACGCGAAACTATAGCGCCTCTCAAAGGAGCTATCAGGTTGAGCTGGTCCTTCCATCGAGGGGCAACGACAGACACCACGATATTGTGTACGGCACTGGGTGGACTGCCGTGGGAGCTATGAATGATGCTGCCTACAGCGCTACCGGCTTTCTCCGTGACACGAGCCCGAAGTGCGCTGTGGATTACCGCTTTGTTCCCTCTAGGCCGGGTGCTAGTCGCTTTGCCACCTACCCTGGTCTGGAATCTGCTCAAGGGGAACCGCCCTCCCCTCACCTCCGTTTGGGCTACTTCGTTAGGTCCCAGGAGAGGATCATCGAGGATCTGATGCATGAGCTCCATCGAGCGAGGCGGCGCATCGCTATTCTCGACCGTGAGGTGGAACCCCGAGCTGGGATTTGGGCCATCCCACCCGAGGTCGTGTACGGCGAAGACGCCATGCTACCAGCGGAGGAGGAGCTGCCCCCTCCATCAGGTTACTACAAGCTGATTACACCATCTCCTACTGTCAAAGGGCATGGTGGTAGTCACCGGGTTGTTGCTGATATTCCACCCCCTTCTGGCCTCCTTGTTGAGGGGCCAAACCACATCCGATATTACCGCGGGAGCTGTTACCGTTTGGTGATGCAGGCACCTCCGCCTCTTGATGATGATGCGGAGATGACTTCTAGCTCTTCGGGTTCTCCCGGACCTTCTGACAGCACCTAG
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| Protein seq | MAPLEPSYYSGGFVAGTMQQTLWEMMQHAGYTRQPQYTVFTRNYSASQRSYQVELVLPSRGNDRHHDIVYGTGWTAVGAMNDAAYSATGFLRDTSPKCAVDYRFVPSRPGASRFATYPGLESAQGEPPSPHLRLGYFVRSQERIIEDLMHELHRARRRIAILDREVEPRAGIWAIPPEVVYGEDAMLPAEEELPPPSGYYKLITPSPTVKGHGGSHRVVADIPPPSGLLVEGPNHIRYYRGSCYRLVMQAPPPLDDDAEMTSSSSGSPGPSDST |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0324600 | Os08t0324600-00 | Chr08 | 14238376 | 14239200 | - | irgsp1_rep | ||
| CDS seq | ATGGCTCCCTTGGAACCCTCTTACTATTCCGGAGGCTTCGTGGCTGGCACCATGCAGCAAACACTCTGGGAAATGATGCAGCACGCCGGCTATACTCGGCAACCCCAGTACACTGTCTTCACGCGAAACTATAGCGCCTCTCAAAGGAGCTATCAGGTTGAGCTGGTCCTTCCATCGAGGGGCAACGACAGACACCACGATATTGTGTACGGCACTGGGTGGACTGCCGTGGGAGCTATGAATGATGCTGCCTACAGCGCTACCGGCTTTCTCCGTGACACGAGCCCGAAGTGCGCTGTGGATTACCGCTTTGTTCCCTCTAGGCCGGGTGCTAGTCGCTTTGCCACCTACCCTGGTCTGGAATCTGCTCAAGGGGAACCGCCCTCCCCTCACCTCCGTTTGGGCTACTTCGTTAGGTCCCAGGAGAGGATCATCGAGGATCTGATGCATGAGCTCCATCGAGCGAGGCGGCGCATCGCTATTCTCGACCGTGAGGTGGAACCCCGAGCTGGGATTTGGGCCATCCCACCCGAGGTCGTGTACGGCGAAGACGCCATGCTACCAGCGGAGGAGGAGCTGCCCCCTCCATCAGGTTACTACAAGCTGATTACACCATCTCCTACTGTCAAAGGGCATGGTGGTAGTCACCGGGTTGTTGCTGATATTCCACCCCCTTCTGGCCTCCTTGTTGAGGGGCCAAACCACATCCGATATTACCGCGGGAGCTGTTACCGTTTGGTGATGCAGGCACCTCCGCCTCTTGATGATGATGCGGAGATGACTTCTAGCTCTTCGGGTTCTCCCGGACCTTCTGACAGCACCTAG
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| Protein seq | MAPLEPSYYSGGFVAGTMQQTLWEMMQHAGYTRQPQYTVFTRNYSASQRSYQVELVLPSRGNDRHHDIVYGTGWTAVGAMNDAAYSATGFLRDTSPKCAVDYRFVPSRPGASRFATYPGLESAQGEPPSPHLRLGYFVRSQERIIEDLMHELHRARRRIAILDREVEPRAGIWAIPPEVVYGEDAMLPAEEELPPPSGYYKLITPSPTVKGHGGSHRVVADIPPPSGLLVEGPNHIRYYRGSCYRLVMQAPPPLDDDAEMTSSSSGSPGPSDST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0324600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005970 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005810 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0177200 | RBH | 0.0944285 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005660 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005800 | RBH | 0.0 | 0.0 | 0.0 |
