Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0176200 | OGI:08011200 | 12/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:4445655-4447532 | ||||||||
| Gene Symbol | ORK1, OsRLCK246, RLCK246 | ||||||||||
| DNA seq | CCCCTCTTTTTTTTTTTTTTTTTGGCAGGGAGGTCATCTCGTACTGGAGCAATTTCTGGTGGAGTGGCTGCTGGAGCAGCCTTGCTATTTAATATTCCTGCTATTGGTTTTGCCTGGTGGCGACGCAGGAAACCCCAAGAGTATTTTCCTGTTGTACCTGGTAAGCATCCAATAGAACAGGGGACTTGGAGAACAACTTTGATTCAACTTACATTTCCTTATTTGTTACAACTAAGTATACAGGGGTCCATCTTGGCCAGCTTAAAAGATTTTCGCTACGAGAACTTCAAGTTGCAACAAAGACCTTCAACAATAAAAACATTCTTGGCACAGGCGGTTTTAGCAAGGTCTATAAAGGAAGACTAGCAGATGGTTCTTTAGTAGCTGTTAAGAGACTAAAGGAGCAGAGAACACCTGGTGGGGAACTACAGTTTCAAACAGAAGTTGAGATGATTAGCATGGCTTTACATAGAAATCTGTTGCGTTTACGTGGGTTCTGTATGACACCCACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGTGTTGCTTCACGTCTGAGAGGTACCTCGCCTTCCTTTTTTCCAGTCATGCATCCCTATATCTTTCAGACAATTAGAGGTTTGATTTGGGTCTTATTTTGTAGAACGACCACCATCTGAACCTCCACTTGATTGGCAAACAAGAAGAAGGATCGCAGCAGGTTCTGCCAGGGGGCTGTCCTATTTACATGATCATTGCAACCCAAAGATCATCCATCGTGATGTCAAAGCGGCAAATATTTTATTAGATGAAGACTTTGAAGCTGTATTTGGAGATTTTGGTTTGGCCAAACCAATGGATTACAAGGATACCCATGTAACAACTGCAGTACATGGAACAATTGGACATATTGCACCAGAATATCTTTCAACAGGAATTCTCTCTGAGAAAACTGATGTATTTGGCTATGGAATCATGCTTTTGGAGCTTATTACAGGAAAACGTGCCTTTGATCTTGCTCTTCTAGCCAGAGGTGAGGGTGTCATGCCACTGGACTGGGTAAGTAACTGGTACATTCCTCAATCCAAATTGCAGTCGAGATGTTCATGCCCTTTTGTGGCTTGCTGCTGTGTCAGAGTTAGATAAAGTAACTTTTCTGTATGTCCAAAAATATCATCTAATAAAATGTAGTTTCAGACTTTCAATAAAGGTCTTAAAAAATAGTATTTTTATGGTTATGTGCTCTGTGCAGGTCAAACGATTAATCAAGGAGGAAAAGCTGGAGAAATTGATTGATCCAGATCTACAGAACAAGTACATTGATGCTGAGGTAGAATCACTAATCCAGGTCGCGCTTCTTTGCACACAAGGCTCCCCTCTGGAACGCCCCAAGATGGCTGCGGTGGTGAGGATGCTTGATGAAGGTGATGGCCTTGCTGAAAGATGGAAGGAGTGGCAGAAGATAGAAATAGTACAGCAGGACGTGGAGCTTGGCCTGTATCAGAATGGTTGGACTGTTGACTCAACTGAGAACCTCCATGCGGTCGAGTTATCAGGGCCAAGGTGATGAATGCTCACCGGTAACTTTCTGCTGATTCTTGTACATCGGAAGAGCAATTCGTACTGATCACCCTAGTCGAATCACCATCTGTTCATATTTGTTTGATGTATAATGCTTTTTCTTGCTCGACGCACAACCATGGACATTGCCATATTGGTGCCACGGAAACAGCACAACCCGAGGAACTAGTGTCCTGAGTGGTTGCTGCAACAATGTCCCAGTATGTTAAACCTACAATTTAGTAGGATGGAACTGGGTATCATTTTTGCCTCCTTTGGGAAGGCTTCAGATGATGCAATTGCCCATGGTGTACTTTTATTTGGGCATTT
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| CDS seq | CCCCTCTTTTTTTTTTTTTTTTTGGCAGGGAGGTCATCTCGTACTGGAGCAATTTCTGGTGGAGTGGCTGCTGGAGCAGCCTTGCTATTTAATATTCCTGCTATTGGTTTTGCCTGGTGGCGACGCAGGAAACCCCAAGAGTATTTTCCTGTTGTACCTGGGGTCCATCTTGGCCAGCTTAAAAGATTTTCGCTACGAGAACTTCAAGTTGCAACAAAGACCTTCAACAATAAAAACATTCTTGGCACAGGCGGTTTTAGCAAGGTCTATAAAGGAAGACTAGCAGATGGTTCTTTAGTAGCTGTTAAGAGACTAAAGGAGCAGAGAACACCTGGTGGGGAACTACAGTTTCAAACAGAAGTTGAGATGATTAGCATGGCTTTACATAGAAATCTGTTGCGTTTACGTGGGTTCTGTATGACACCCACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGTGTTGCTTCACGTCTGAGAGAACGACCACCATCTGAACCTCCACTTGATTGGCAAACAAGAAGAAGGATCGCAGCAGGTTCTGCCAGGGGGCTGTCCTATTTACATGATCATTGCAACCCAAAGATCATCCATCGTGATGTCAAAGCGGCAAATATTTTATTAGATGAAGACTTTGAAGCTGTATTTGGAGATTTTGGTTTGGCCAAACCAATGGATTACAAGGATACCCATGTAACAACTGCAGTACATGGAACAATTGGACATATTGCACCAGAATATCTTTCAACAGGAATTCTCTCTGAGAAAACTGATGTATTTGGCTATGGAATCATGCTTTTGGAGCTTATTACAGGAAAACGTGCCTTTGATCTTGCTCTTCTAGCCAGAGGTGAGGGTGTCATGCCACTGGACTGGGTCAAACGATTAATCAAGGAGGAAAAGCTGGAGAAATTGATTGATCCAGATCTACAGAACAAGTACATTGATGCTGAGGTAGAATCACTAATCCAGGTCGCGCTTCTTTGCACACAAGGCTCCCCTCTGGAACGCCCCAAGATGGCTGCGGTGGTGAGGATGCTTGATGAAGGTGATGGCCTTGCTGAAAGATGGAAGGAGTGGCAGAAGATAGAAATAGTACAGCAGGACGTGGAGCTTGGCCTGTATCAGAATGGTTGGACTGTTGACTCAACTGAGAACCTCCATGCGGTCGAGTTATCAGGGCCAAGGTGA
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| Protein seq | PLFFFFFLAGRSSRTGAISGGVAAGAALLFNIPAIGFAWWRRRKPQEYFPVVPGVHLGQLKRFSLRELQVATKTFNNKNILGTGGFSKVYKGRLADGSLVAVKRLKEQRTPGGELQFQTEVEMISMALHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERPPSEPPLDWQTRRRIAAGSARGLSYLHDHCNPKIIHRDVKAANILLDEDFEAVFGDFGLAKPMDYKDTHVTTAVHGTIGHIAPEYLSTGILSEKTDVFGYGIMLLELITGKRAFDLALLARGEGVMPLDWVKRLIKEEKLEKLIDPDLQNKYIDAEVESLIQVALLCTQGSPLERPKMAAVVRMLDEGDGLAERWKEWQKIEIVQQDVELGLYQNGWTVDSTENLHAVELSGPR |
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| Function | LRR receptor kinase BAK1 [UniProtKB/Swiss-Prot:Q6Z4U4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0176200 | Os08t0176200-01 | Chr08 | 4445655 | 4447532 | + | irgsp1_rep | ||
| CDS seq | CCCCTCTTTTTTTTTTTTTTTTTGGCAGGGAGGTCATCTCGTACTGGAGCAATTTCTGGTGGAGTGGCTGCTGGAGCAGCCTTGCTATTTAATATTCCTGCTATTGGTTTTGCCTGGTGGCGACGCAGGAAACCCCAAGAGTATTTTCCTGTTGTACCTGGGGTCCATCTTGGCCAGCTTAAAAGATTTTCGCTACGAGAACTTCAAGTTGCAACAAAGACCTTCAACAATAAAAACATTCTTGGCACAGGCGGTTTTAGCAAGGTCTATAAAGGAAGACTAGCAGATGGTTCTTTAGTAGCTGTTAAGAGACTAAAGGAGCAGAGAACACCTGGTGGGGAACTACAGTTTCAAACAGAAGTTGAGATGATTAGCATGGCTTTACATAGAAATCTGTTGCGTTTACGTGGGTTCTGTATGACACCCACAGAAAGGTTGCTTGTGTATCCATACATGGCTAATGGAAGTGTTGCTTCACGTCTGAGAGAACGACCACCATCTGAACCTCCACTTGATTGGCAAACAAGAAGAAGGATCGCAGCAGGTTCTGCCAGGGGGCTGTCCTATTTACATGATCATTGCAACCCAAAGATCATCCATCGTGATGTCAAAGCGGCAAATATTTTATTAGATGAAGACTTTGAAGCTGTATTTGGAGATTTTGGTTTGGCCAAACCAATGGATTACAAGGATACCCATGTAACAACTGCAGTACATGGAACAATTGGACATATTGCACCAGAATATCTTTCAACAGGAATTCTCTCTGAGAAAACTGATGTATTTGGCTATGGAATCATGCTTTTGGAGCTTATTACAGGAAAACGTGCCTTTGATCTTGCTCTTCTAGCCAGAGGTGAGGGTGTCATGCCACTGGACTGGGTCAAACGATTAATCAAGGAGGAAAAGCTGGAGAAATTGATTGATCCAGATCTACAGAACAAGTACATTGATGCTGAGGTAGAATCACTAATCCAGGTCGCGCTTCTTTGCACACAAGGCTCCCCTCTGGAACGCCCCAAGATGGCTGCGGTGGTGAGGATGCTTGATGAAGGTGATGGCCTTGCTGAAAGATGGAAGGAGTGGCAGAAGATAGAAATAGTACAGCAGGACGTGGAGCTTGGCCTGTATCAGAATGGTTGGACTGTTGACTCAACTGAGAACCTCCATGCGGTCGAGTTATCAGGGCCAAGGTGA
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| Protein seq | PLFFFFFLAGRSSRTGAISGGVAAGAALLFNIPAIGFAWWRRRKPQEYFPVVPGVHLGQLKRFSLRELQVATKTFNNKNILGTGGFSKVYKGRLADGSLVAVKRLKEQRTPGGELQFQTEVEMISMALHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERPPSEPPLDWQTRRRIAAGSARGLSYLHDHCNPKIIHRDVKAANILLDEDFEAVFGDFGLAKPMDYKDTHVTTAVHGTIGHIAPEYLSTGILSEKTDVFGYGIMLLELITGKRAFDLALLARGEGVMPLDWVKRLIKEEKLEKLIDPDLQNKYIDAEVESLIQVALLCTQGSPLERPKMAAVVRMLDEGDGLAERWKEWQKIEIVQQDVELGLYQNGWTVDSTENLHAVELSGPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0176200 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07890 | RBH | 0.021331 | 0.0 | 0.141555 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0634000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005190 | RBH | 0.0 | 1.143349 | 0.773958 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005150 | SBH | 0.566129 | 3.807593 | 2.670955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005230 | RBH | 0.122761 | 0.416252 | 1.663347 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005140 | SBH | 0.302134 | 0.890244 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004860 | SBH | 11.632515 | 40.903660 | 22.549665 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0065800 | SBH | 12.3640405 | 24.426236 | 24.4853645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004700 | SBH | 0.955543 | 0.887038 | 1.775215 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0071500 | SBH | 13.3868145 | 23.7184055 | 49.364815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004810 | SBH | 0.796501 | 0.425412 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004870 | SBH | 0.350438 | 8.225467 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004680 | SBH | 12.627091 | 28.978569 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004960 | SBH | 1.709963 | 2.851205 | 1.580193 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004890 | SBH | 0.915712 | 8.369355 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004810 | SBH | 0.951905 | 8.102715 | 5.424362 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004780 | SBH | 3.000443 | 42.299583 | 22.757721 |
