Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0172566 | OGI:08010880 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:4254521-4255346 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTGGTCAGGCTGCCCATGACCACCTAAATCCATAGTATCTACATCAGAAAAGGAGACTTCAAATTTTTCATCATATGCTTTTTTCATTTCTTCAAATTTATCATTCATTTCTTTTTTTAATTCATTAAGTATTTCTTCTTTCAATTCTTTTTTAATTTGGGGGGATGCTTCTTCAAATTTTTCAATTATTTTCCAATCGATATATTCGCCATCCAAAGGATCTACTCCCTTAGTCAAGCATTCCTTATACGTAGGTTTTTGGGATGATCCTTCATTCTTAATATTTGAACAATATGGGTTCTCTGGAGCTTTCTTATTTTTGGCTTTTTTGCATTTTTGTATATATTCTTTTGCTGCTGGTTCCAAGTAGTAGTTTATTCCTAATATTTTTCTGGCCTGAGTTAAAGCTTCATCAAAATCTATATATTTTTTCCATGACAATCCACCCATTAATTTTGCATCTATTTTTTGGGCTACTATCTCTTCAAAAGATATGTACACTCCAGGAAGCTTTCCGTCAAAAACAACATATATGGGTTTTTGCTGTATTACTTCATTATTTTCTGATGTTGGCATTATATCATTCATTAGATGGAAATATTCAGCAAGACTGTTTAATATTGATAGCATATAGCCTTTTTCTTCCCTCTTATTATTGTATTGATACCAGAAATTATCTAAAATGCATTCTTGGACTTCATCTAATATTATGTGGGTTTTTGGCTTAAACTTATAGGTATTCGGTGGGAATACTTTGAGCTTATTGTCTTCTCCAAACGTGAAGAACTCAACTCCATTATAATTCATGGACTTCTTCATTCCT
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| CDS seq | ATGAAGAAGTCCATGAATTATAATGGAGTTGAGTTCTTCACGTTTGGAGAAGACAATAAGCTCAAAGTATTCCCACCGAATACCTATAAGTTTAAGCCAAAAACCCACATAATATTAGATGAAGTCCAAGAATGCATTTTAGATAATTTCTGGTATCAATACAATAATAAGAGGGAAGAAAAAGGCTATATGCTATCAATATTAAACAGTCTTGCTGAATATTTCCATCTAATGAATGATATAATGCCAACATCAGAAAATAATGAAGTAATACAGCAAAAACCCATATATGTTGTTTTTGACGGAAAGCTTCCTGGAGTGTACATATCTTTTGAAGAGATAGTAGCCCAAAAAATAGATGCAAAATTAATGGGTGGATTGTCATGGAAAAAATATATAGATTTTGATGAAGCTTTAACTCAGGCCAGAAAAATATTAGGAATAAACTACTACTTGGAACCAGCAGCAAAAGAATATATACAAAAATGCAAAAAAGCCAAAAATAAGAAAGCTCCAGAGAACCCATATTGTTCAAATATTAAGAATGAAGGATCATCCCAAAAACCTACGTATAAGGAATGCTTGACTAAGGGAGTAGATCCTTTGGATGGCGAATATATCGATTGGAAAATAATTGAAAAATTTGAAGAAGCATCCCCCCAAATTAAAAAAGAATTGAAAGAAGAAATACTTAATGAATTAAAAAAAGAAATGAATGATAAATTTGAAGAAATGAAAAAAGCATATGATGAAAAATTTGAAGTCTCCTTTTCTGATGTAGATACTATGGATTTAGGTGGTCATGGGCAGCCTGACCAATAA
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| Protein seq | MKKSMNYNGVEFFTFGEDNKLKVFPPNTYKFKPKTHIILDEVQECILDNFWYQYNNKREEKGYMLSILNSLAEYFHLMNDIMPTSENNEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGLSWKKYIDFDEALTQARKILGINYYLEPAAKEYIQKCKKAKNKKAPENPYCSNIKNEGSSQKPTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQIKKELKEEILNELKKEMNDKFEEMKKAYDEKFEVSFSDVDTMDLGGHGQPDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0172566 | Os08t0172566-00 | Chr08 | 4254521 | 4255346 | - | irgsp1_rep | ||
| CDS seq | ATGAAGAAGTCCATGAATTATAATGGAGTTGAGTTCTTCACGTTTGGAGAAGACAATAAGCTCAAAGTATTCCCACCGAATACCTATAAGTTTAAGCCAAAAACCCACATAATATTAGATGAAGTCCAAGAATGCATTTTAGATAATTTCTGGTATCAATACAATAATAAGAGGGAAGAAAAAGGCTATATGCTATCAATATTAAACAGTCTTGCTGAATATTTCCATCTAATGAATGATATAATGCCAACATCAGAAAATAATGAAGTAATACAGCAAAAACCCATATATGTTGTTTTTGACGGAAAGCTTCCTGGAGTGTACATATCTTTTGAAGAGATAGTAGCCCAAAAAATAGATGCAAAATTAATGGGTGGATTGTCATGGAAAAAATATATAGATTTTGATGAAGCTTTAACTCAGGCCAGAAAAATATTAGGAATAAACTACTACTTGGAACCAGCAGCAAAAGAATATATACAAAAATGCAAAAAAGCCAAAAATAAGAAAGCTCCAGAGAACCCATATTGTTCAAATATTAAGAATGAAGGATCATCCCAAAAACCTACGTATAAGGAATGCTTGACTAAGGGAGTAGATCCTTTGGATGGCGAATATATCGATTGGAAAATAATTGAAAAATTTGAAGAAGCATCCCCCCAAATTAAAAAAGAATTGAAAGAAGAAATACTTAATGAATTAAAAAAAGAAATGAATGATAAATTTGAAGAAATGAAAAAAGCATATGATGAAAAATTTGAAGTCTCCTTTTCTGATGTAGATACTATGGATTTAGGTGGTCATGGGCAGCCTGACCAATAA
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| Protein seq | MKKSMNYNGVEFFTFGEDNKLKVFPPNTYKFKPKTHIILDEVQECILDNFWYQYNNKREEKGYMLSILNSLAEYFHLMNDIMPTSENNEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGLSWKKYIDFDEALTQARKILGINYYLEPAAKEYIQKCKKAKNKKAPENPYCSNIKNEGSSQKPTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQIKKELKEEILNELKKEMNDKFEEMKKAYDEKFEVSFSDVDTMDLGGHGQPDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0172566 | RBH | 0.0 | 0.060623 | 0.144483 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07570 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0198100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0111200 | SBH | 0.1601045 | 0.1890575 | 0.092886 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0069200 | RBH | 0.0709765 | 0.1249955 | 0.088686 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
