Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0148300 | OGI:08007230 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:2772327-2774458 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTCCAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCACCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCTCCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGGTGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGTGCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCGACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGAGGCTGCAGCACAACGAGCTCACCGGAGAGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGGAACGCGCTCACCGGCACCGTCCCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTCGACGTGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGCAGCCCCGCGCGGCACACGGCGGCGATGTGGGTGCCCGCCGTGGCGGTGGCGTTCGCCGGCATGGTGGTGCTCGCGGGCACCGCGCGCTGGCTGCAGTGGCGTGGCGGCGACGACACGGCGGCGGCAGACGCGCTCGGTCCCGGCGGCGCGCGCCACCCCGACCTCGTCGTCGGGCCGTGGCGGATGACCGCGTTCCAGAGGCTGAGCTTCACCGCCGACGACGTGGCGAGGTGCGTCGAGGGGAGCGACGGCATCGTCGGCGCCGGGTCGTCGGGGACGGTGTACCGCGCCAAGATGCCCAATGGCGAGGTCATCGCCGTGAAGAAGCTGTGGCAGGCGCCGGCGGCGCAGAAGGAGGCAGCCGCACCGACGGAGCAGAACCAGAAGCTCCGGCAAGACAGCGACGGCGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTCGACGAGCTCCTCCACGGCGCCGCCGCCAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAGGGCGTCAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCCAGCAACATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAGGCGCTCCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCAGGTGAGCCGCATACACATCATCCGCCACGTGTCCATCAAAATCATTACTAACTCCGTTTCATGTTATAAGACTTTCTAACATTGCCCACATTCATATATATGTTAATGAATCTAGACACATGCGTATCTAGATTGTGTCTAGATTCATTAACATATATATGAATGTGGGTAATACTAGAAAGTCTTATAATATAAAATAGATGAAATATTAATCATATTTTTTATTTTTGTCATTTTCTAAGAGTACACGTACACTCTAAAAGTGAACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTACTATTGGAGATCCTGACGGGACGGCGGTCGGTGGAGGCGGAGTACGGGGAGGGGAACAACATCGTGGACTGGGTGCGGCGGAAGGTGGCCGGAGGCGGGGTGGGCGACGTGATCGACGCTGCGGCGTGGGCCGACAATGATGTCGGTGGCACGCGGGACGAGATGGCGCTGGCGCTTAGGGTGGCGCTGCTGTGCACCAGCCGGTGCCCGCAGGAGCGGCCGTCGATGAGGGAGGTGCTGTCCATGCTGCAGGAGGCCAGGCCGAAACGGAAGAACTCGGCCAAGAAGCAGGTTAAGTAAAATGGGTGATGGTTAAGTCTTTAGCAGAAAGAAGAACTAATATATATGGTGTGCTCTTCGTGTGCAGTGTGTGTTGTGTATGTATAATTAACTTATTTAGTTACTGTCATGAATGGGCTTGCAT
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| CDS seq | GCCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTCCAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCACCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCTCCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGGTGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGTGCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCGACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGAGGCTGCAGCACAACGAGCTCACCGGAGAGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGGAACGCGCTCACCGGCACCGTCCCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTCGACGTGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGCAGCCCCGCGCGGCACACGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTCGACGAGCTCCTCCACGGCGCCGCCGCCAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAGGGCGTCAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCCAGCAACATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAGGCGCTCCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCAGAGTACACGTACACTCTAA
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| Protein seq | ADCSSLWRVRLEANRLSGEIPAGFGAIRNLTYMDLSSNSLTGGGIPADLVASPSLEYFNVSGNLVGGALPDMAWRGPKLQVFAASRCGLVGELPAFGATGCANLYRLELAGNALGGGIPGDIGSCKRLVSLRLQHNELTGEIPAAIAALPSITEVDLSWNALTGTVPPGFTNCTTLETFDVSFNHLAPAEPSSDAGERGSPARHTAAAARGRWPRWRCSATSATATSSGCWGGAPTASPRCCSTSTCPTAASTSSSTAPPPRRGRAGTPGTRSPSASRRASATSTTTASPPSRTATSSPATSSSTTTWRHASPTSASPRRSRAPPPCPSSPAHAATLHQSTRTL |
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| Function | Leucine-rich repeat receptor-like protein kinase TDR [UniProtKB/Swiss-Prot:Q9FII5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0148300 | Os08t0148300-01 | Chr08 | 2772327 | 2774458 | + | irgsp1_rep | ||
| CDS seq | GCCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTCCAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCACCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCTCCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGGTGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGTGCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCGACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGAGGCTGCAGCACAACGAGCTCACCGGAGAGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGGAACGCGCTCACCGGCACCGTCCCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTCGACGTGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGCAGCCCCGCGCGGCACACGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTCGACGAGCTCCTCCACGGCGCCGCCGCCAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAGGGCGTCAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCCAGCAACATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAGGCGCTCCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCAGAGTACACGTACACTCTAA
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| Protein seq | ADCSSLWRVRLEANRLSGEIPAGFGAIRNLTYMDLSSNSLTGGGIPADLVASPSLEYFNVSGNLVGGALPDMAWRGPKLQVFAASRCGLVGELPAFGATGCANLYRLELAGNALGGGIPGDIGSCKRLVSLRLQHNELTGEIPAAIAALPSITEVDLSWNALTGTVPPGFTNCTTLETFDVSFNHLAPAEPSSDAGERGSPARHTAAAARGRWPRWRCSATSATATSSGCWGGAPTASPRCCSTSTCPTAASTSSSTAPPPRRGRAGTPGTRSPSASRRASATSTTTASPPSRTATSSPATSSSTTTWRHASPTSASPRRSRAPPPCPSSPAHAATLHQSTRTL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0148300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003160 | RBH | 0.0 | 0.0 | 0.479709 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003210 | SBH | 0.0 | 0.000000 | 0.386415 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003180 | RBH | 0.0 | 0.000000 | 0.321313 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002990 | RBH | 0.0 | 0.0 | 0.902026 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0041900 | RBH | 1.149226 | 2.881032 | 6.3412745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002860 | SBH | 0.0 | 0.000000 | 0.229406 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0047000 | RBH | 1.159967 | 1.763472 | 13.3290165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002910 | SBH | 0.0 | 0.098547 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002950 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002760 | SBH | 0.0 | 2.560532 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003010 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002930 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002900 | SBH | 0.0 | 0.000000 | 1.318370 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002770 | RBH | 0.0 | 0.880392 | 0.261694 |
