Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0107650 | OGI:08011380 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:374114-376404 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGTCAAACAGCCCTTGTTTTCACAACAGGACGATACTTTTCAGGGATAGCATTTATATGTTGATCGTATTTGCCACTTGAAACCAGCAAAACCAGCGACTCAGCCGTGGAAGCTTCAAGGGAGAAGTTATTTTCATCAATTTTGGAGAGATAAACCCCAGCCTTGCGTACCTCCCCTTTCTGTAGTAACTTTCCAACTAAAGCATTTAGCATTCGGGAGTTAGCTGTACAACCATTCTTCTCCAAAGAAAGAAATAAATCATCCAACTCTTCTAGCAACCCTTGTTCTATCAAACTTTTCATCATTAACCAGTAGGTCACAACATTCGGCACTAAACCTCTAGCCAAGAGAGAAGCAAACAGATCCTTAGCTTCATCATGCCTGCCACCTTTAAGTAACGCATCAATCATAATGTTAAAAGTCCTATTCTCTAGGTGGAAATCAATCAAATATAGGTTCTGAAAAATTCGGAGAGCATCATCAGTGCAATTGTTTTGGCAAAGTCCTAGAAGTATTATGTTGTATGTGCCGATATCAAACTTTATCCCACTTTTAATCATCCAAAGATAGAGTTCTTTTGCGGCTGCAGTTCTTCTAGCCTGAAACAACCCCTGGAGGATTGTGCTATAGGTAACAATGCCAGGATTAACACCCTTGCTTGCCATCTGTCTGAAAAGAGAAAATGCATCCTCTATCCTACCGTTCTTACAGTAACCATTAATCATGGTATTATAGGTAACTTCGTTAGGTTTCACCCCATCTAACACCATACCTTCAAGTAACTTTGCTGCTTCATCCACCTTACCATGTAAGCAATATCCATCTATGAGTGTGTTGTATGTAATGACATCACGCTGCACATCTACACGTACCATCAAGTCAAATATGTTTTTGGCTCTTGCAACCATTCCTTCTTTGCATAGGTGGTTCAACAATGTGTTGAAGAAAATGTTGTTGGGACAGATGCCTCGACCGATCATTTCAACAGCTAACTCCTCAGCCTTGTCCCATTTATCACGGGCACAAAGGCCATGAATTAAGTTTCTAAAAACAACAGCATCAGGAGTTAGTCCTTCAGAGATGAGCCTGCCAAATTGGGCCATAGCATCATCCACTTTACCTACCATGCAGAGCGCGTCCATTACTATTCCGTAGGTGACTGTATCAGGATTCAATCCTTGCCTCCTCATTTTGCTAAATAAAAGCATGGCATCATCTACTTTTCCATGTTTAGTGTATGTGCCTATTAATATGTTAAAGATGTAGTGATCAGGTTGAATACCGTTTCGTACCATCATATCCAATAGATGATGCATCTTAACAAGAGATCCTTCAGTAGCATACCCATGAAGCAGAGTACCGTAGGTAGCACTGTTAGGCTTGTGGCCCCTCTTGACCATAGAGTCAAAGATCTTTCTAGCTTCCATGGATCTTCCATTCTTGCAGAGATAGCCCATCAACGTGTTATAAGTGAATACATCTGGTTCAACACCATCCCTGCACATCCTTTTGAAAACCCCAATAGCGTCATTGGGCTTTCCTGATGAGCAATATCCATGCAAAAGACTATTGTGCGTGATGCGATTAGGCATAGCACCATTCTTAACCATCCTAACAAGGACCACAGCGGCCTTGTCCATTGCTCGAGCCTTGGAAAGGGCAGAGATAATCGAGTTGTAAGTCACAACATCAGGCGACAACCCCTGATCCAGCATTTGATCAAATAGGTGATAAGCTGTGTCCAGCTGACGACCCTCTCTAAGCAAGCCGTTGATGACTGTGTTGTATGAAACCACGTCGGGTGGGTATCCTCCTCTGGTATCATCAGCCACCATCATGGTGTGGAGCAGGTGGAGAGCTTGTTGACTCCGGTTTTCATCACAGAGGCCCTTGAGAAGGATGGTGTAGGAGAAGACATTGGGTGTGCAACCCAGAACAGGCATTCGTCGCAGCGCAATGTCCATTGCTTCGCTGGTCCTCTTTTTGTCGCAGAGAGCCTTGAGCAGAGGACTGAAGGTGATTGCTTCCGCCGTCCATCCAGACCTAATGACACGGCCGAGGGCGGCGAAAGCGAGGTCCAAGTGGCCGACGCGGCTGCAGCAGTCAATGACGACGCTGTAGGTGATTAAGTTAGGAGGCACCTTGGGTCGGGCCACCATCACCATGCGGCGGAAGAGGGAGATGGCGACGGCTGGGCTGTGACGCGCGGCGTCGGAGAGGGCGCGATTCAGGTCGACGATGCTGCTGGTGGTGGGTCGGTGAAGCAATTCATCGAACGCGTGGTGGGCGT
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| CDS seq | ATGATGCATCTTAACAAGAGATCCTTCAGTAGCATACCCATGAAGCAGAGTACCGTAGGTAGCACTGTTAGGCTTGTGGCCCCTCTTGACCATAGAGTCAAAGATCTTTCTAGCTTCCATGGATCTTCCATTCTTGCAGAGATAGCCCATCAACGTGTTATAAGTGAATACATCTGGTTCAACACCATCCCTGCACATCCTTTTGAAAACCCCAATAGCGTCATTGGGCTTTCCTGA |
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| Protein seq | MMHLNKRSFSSIPMKQSTVGSTVRLVAPLDHRVKDLSSFHGSSILAEIAHQRVISEYIWFNTIPAHPFENPNSVIGLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0107650 | Os08t0107650-00 | Chr08 | 374114 | 376404 | + | irgsp1_rep | ||
| CDS seq | ATGATGCATCTTAACAAGAGATCCTTCAGTAGCATACCCATGAAGCAGAGTACCGTAGGTAGCACTGTTAGGCTTGTGGCCCCTCTTGACCATAGAGTCAAAGATCTTTCTAGCTTCCATGGATCTTCCATTCTTGCAGAGATAGCCCATCAACGTGTTATAAGTGAATACATCTGGTTCAACACCATCCCTGCACATCCTTTTGAAAACCCCAATAGCGTCATTGGGCTTTCCTGA
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| Protein seq | MMHLNKRSFSSIPMKQSTVGSTVRLVAPLDHRVKDLSSFHGSSILAEIAHQRVISEYIWFNTIPAHPFENPNSVIGLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0107650 | RBH | 0.0 | 0.0 | 0.275130 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07950 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005220 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005240 | RBH | 0.0 | 8.886996 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005270 | SBH | 0.0 | 2.212497 | 0.109327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005250 | RBH | 0.0 | 0.276335 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004960 | SBH | 0.374005 | 5.202730 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004790 | SBH | 0.0 | 1.880098 | 0.044126 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005060 | SBH | 0.0 | 1.051545 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
